These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1023 fasta sequence [TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAATCTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTCTGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTGCTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTACCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTGCTCTCTCTCTCGATCGATCTT-CCAAAACATAGCCTT-CCCCTTCCCTTTTCCTCCTCCTCCTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC-GGGTGTGGTTGATGTTTAGTCCTC-TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC-GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [+] EMBL CNS08QDL [TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAATCTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTCTGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTGCTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTACCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTGCTCTCTCTCTCGATCGATCTT CCAAAACATAGCCTT CCCCTTCCCTTTTCCTCCTCCTCCTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTt ] [-] EMBL BX606348 [ CGATCGATCTTCCCAAAACATAGCCTTCCCCCTTTCCTTTTCCTCCT T CTCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAGATACGTGTCTGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [-] EMBL BX602549 [ CAACAACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [-] EMBL BM620158 [ CCACCACCCCGAGGACGGGGACGGGGTGTGGTTGATGTTTAGTCCTCTTTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGAGGC] [-] EMBL BX610948 [ CACCCCGAGGACGGGGAC GGGTGTGGTTGATGTTTAGTCCTC TTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTAACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCC ] [-] EMBL BM649045 [ GAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTCGGGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [-] EMBL BM578106 [ TGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCGCCCCAGCCCCAGGTC GGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATCTCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGAGGC] [-] EMBL BM612889 [ CCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [-] EMBL BX602566 [ CGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGAACGCCGTCGTCAGGTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGG GCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] [-] EMBL BM619393 [ TAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGAACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCTCCGAGGGCGAGATGCTCTTATCGTACGGCTTATCTCCCCACTTGTGGGCAGCGCTGTTCACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGCGTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGTGTAATCGTGGGCAGCACGAAGCAGGCCAGTGGC] consensusID : consensus_8556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [GTGTTTTTTCCTTCTTCTTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTGCTCTTCTTGCTGCTTGGTGCAACAGGAGGAGTTGTAGTAGTAGTAGTAGTAGTTGCTGTTGTTGTTGTGGTGATGGTGGTATAAGAAAGTGCTGTAATATGTGTGGCCGGCGCCTACTGCTGATGCTGCTGCTGCTGCTGCTACGGCTGATTCTGGTACCGTCGTTTACTGCTTTTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCTCCCCGTCGCCGACGATAGGCTGGCCTCGGAGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCGCTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCGCACTGCCGGCATTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCCCACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCAGGTAATGAGGCCACGGTTTTCCTTGCTCTTCTTGAAGTGGGGCGTCTTGTCGCGGTGAAAGATTTCGACCCGGCGGATCGGCCATGT] [+] EMBL BM582255 [GTGTTTTTTCCTTCTTCTTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTGCTCTTCTTGCTGCTTGGTGCAACAGGAGGAGTTGTAGTAGTAGTAGTAGTAGTTGCTGTTGTTGTTGTGGTGATGGTGGTATAAGAAAGTGCTGTAATATGTGTGGCCGGCGCCTACTGCTGATGCTGCTGCTGCTGCTGCTACGGCTGATTCTGGTACCGTCGTTTACTGCTTTTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCTCCCCGTCGCCGACGATAGGCTGGCCTCGGAGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCGCTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCGCACTGCCGGCATTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCCCACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCAGGTAATGAGGCCACGGTTTTCCTTGCTCTTCTTGAAGTGGGGCGTCTTGTCGCGGTGAAAGATTTCGACCCGGCGGATCGGCCATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8556#0 TCCATTTTGTAATTCCCATTTTTTTAATTGTTCAGGTAATGCAATGCGCCCTTTCCTAAT 60 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 CTCGCTTCTGGTGCGGTGCGGACTTGTGTTAGTATGGAGATGTTTGTGTGTGTATGTGTC 120 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 TGTGTGTTTTAAACGTATTTAAACTTATGAACCAGCCTTTTGATGTTACCCTCATTTTTG 180 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 CTTAGAGCATTATTTCATGTACCTTCTATAATCGCGCACACCCGCGCACTTCAGTTCCTA 240 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 CCGATTTTTTCTCTTTTCATTCGATTTCGCTCCTTATCACACACACACACACAGCATGTG 300 consensus_8556#1 ------------------------------------------------------------ consensus_8556#0 CTCTCTCTCTCGATCGATCTTCCAAAACATAGCCTTCCCCTTCCCTTTTCCTCCTCCTCC 360 consensus_8556#1 -------------------------------------------GTGTTTTTTCCTTCTTC 17 *** **** ** * consensus_8556#0 TCCTCCTTTTAATCGAGAATGCACTCTTGTGGCGCTACACACTATGAATTCCTTCCGAAG 420 consensus_8556#1 TTTATATCTTTATATATTCTAGCTGCTGGTGGTGGTGAATGCTGTTG-CTCTTCTTGC-- 74 * * ** ** * * ** **** * * * ** * ** * * consensus_8556#0 ATACGTGTCCGATTCGTCACACCACCCCCTCTCCTACTACTGTCGGACGGTCACAACAAC 480 consensus_8556#1 -----TGCTTGGT--GCAACAGGAGGAGTTGTAGTAGTAGTAGTAG-TAGTTGCTGTTGT 126 ** * * * *** * * * ** ** * * ** * consensus_8556#0 AACAACACTGTCGGTGGCACCACCACCCCGAGGACGGGGACGGGTGTGGTTGATGTTTAG 540 consensus_8556#1 TGTTGTGGTGATGGTGGTATAAGAA-----AGTGCTGTAATATGTGTGGCCGGCGCCTAC 181 ** ***** * * * ** * * * ****** * * ** consensus_8556#0 TCCTCTTTCTGGTTGAGAATGGTGGCGTGCTTCACCTCGTACTGGTCCTGATCCTTGTCG 600 consensus_8556#1 TGCTGATGCTGCT-----GCTGCTGC-TGCTACGGCTGATTCTGGTACCGTCGTTTACTG 235 * ** * *** * * ** **** * ** * ***** * * ** * consensus_8556#0 CCCCAGCCCCAGGTCGGGTGGCTACCGTCGCCGGTGCGCTTGACGCGCTTTTCCACGATC 660 consensus_8556#1 CTT----TTTTACTGCTGTGGCTGCTGCTGCTGCTGCTGCT--CCCCGTCGCCGACGATA 289 * * ****** * * ** * *** * * * * * ***** consensus_8556#0 TCCTTCGACACCGTCTTCAGATCGTACGCCCAGCCAATCTTGGCGAAGAAGTCGATGA-A 719 consensus_8556#1 GGCT--GGCCTCGG----AGATGCAGGACGAAGACGAGCCCGACGACGACGTGGACAGCG 343 ** * * ** **** * ** * * * * *** ** ** ** consensus_8556#0 CGCCGTCGTCAG-GTTCATTCGGTAGTTGCCCAGCTCGGCCGTCTTGTAGTCCCACGGGA 778 consensus_8556#1 CTTCGTCGTCCGAGTTGGAGCCCGATACGAGCGCCTCACCCGCTCCCTCCTTCAGCG--- 400 * ******* * *** * * * * *** *** * * * ** consensus_8556#0 ACACGTGATGGTAGTTGTGCCAACCTTCGCCAAACGCGAACGAAGCCACCGTCCGATTCT 838 consensus_8556#1 -CAC-TGCCGGCA-TTGCGCGTAAACTCGCGGCGCTTTTCCCGCGCCGTCAGCCCGCCCC 457 *** ** ** * *** ** * **** * * *** * ** * consensus_8556#0 CCGAGGGCGAGATGCTCTTATCGTACGGCTTAT-CTCCCCACTTGTG-GGCAGCGCTGTT 896 consensus_8556#1 C--ACTGCCGGACGCCTTGGACGAACTGCCGACGCCCCCCATCAGTGCAGTCGTGTCGCA 515 * * ** ** ** * ** ** ** * * ***** *** * * * * consensus_8556#0 CACCAGCCAGGTCACGTTCAGGATGAATGTCCAGCGGAATAGCGTGGCAACGAACCAGGC 956 consensus_8556#1 GGT-AATGAGGCCACGGTTT---TCCTTGCTCTTCTTGA-AGTGGGGCGTCTTGTC--GC 568 * *** **** * * ** * * * ** * *** * * ** consensus_8556#0 GTTGGTCCAGGTTTCGTTCCAGAAGTACACCGGCGTAATCGTGGGCAGCACGAAGCAGGC 1016 consensus_8556#1 GGTGA--AAGATTTCGACCCGGCGGATCGGCCATGT------------------------ 602 * ** ** ***** ** * * * * ** consensus_8556#0 CAGTGGC 1023 consensus_8556#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||