These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8581#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1078 fasta sequence [CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG-AATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAA-CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA-TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT--GC--GTGTG-TGT-TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA-GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT-TCTTACATTAATTT-TAATCA-T-TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA-TTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT-CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGCTGCGTTGGC] [+] EMBL AL933033 [CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGGCAATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAACCCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATACACATGACTAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTGCTGTCTCGTAGTCTCGAACGGTGGGACCTCACTCT GCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAACGGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTTATCTTACATTAATTTCTAATCACTCTATCTCTAACGCGCTT ] [+] EMBL BM650347 [ CCGGTGTTTATGAATTCGTTTTACTACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG AATGGAAGGCAGGGGTGTGTACGATCGAATTGCTGGCTGGACGCTGGTGAACGATTTGCAAACACAGGAAACTAAAACAA CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCCCAAGAACGCGAGTCTAGCGCAAGAGGTAATACACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGACCTCACTCT GCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTTCTTCAAATTAAC ] [+] EMBL BX621425 [ CCTTAATATACATACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAAGAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCTCGAAT GAAGCGCTTGCGCGCTTTCTTGTTTGACAATTT TCTTACATTAATTT TAAACA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAA ] [+] EMBL BX609881 [ GTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GCGTGTGTG TGT TTGGAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCTCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTTCTTCAAATTAACTAGGTTTGTTT ] [+] EMBL BX622504 [ AGAACGCGAGTCTAGCGCAAGAGGTAATGCACATGA TAAGCGGTGCGACTAAAGGCGCGTAAACATGAATCAGTGT GC GTGTG TGT TTGTAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAAGAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCTCGAAT GAAGCGCTTGCGCGCTTTCTTGTTTGACAATTT TCTTACATTAATTT TAAACA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTA TTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCNCCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAANGAATTTNGAAAAGCGGGAAAAGGACGAACTAAGAATAATCCAAC ] [+] EMBL BX615458 [ GGCGCGTAAACATGAATCAGTGTGCGC GTGTG TGT TTGGAGTCTCGAACGGTGGGGCCTCACTCTGCCGATCTCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGAGGATTAGAA GGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTGGTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACAATTT TCTTACATTAATTT TAATCA T TATCTCTAACGCGCTTGAGAGCAGGCATCATCGTAGACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTTCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTT ] [+] EMBL AGA280506 [ ttTTTAAATTAACTAGGTTTGTTTTT CCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTTCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGCTGCGTTGGC] [-] EMBL CNS08Y3V [ CAAATTAACTAGGTTCGTTTTTCCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAAGCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGGGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGGTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACATTTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAA ] consensusID : consensus_8581#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAAC] [+] EMBL BM603389 [CCGCCCACGCGTCCGCCCACGCGTCCGCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACATGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGGACGAAC] consensusID : consensus_8581#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [GAATGCTCGAGGCAGAATATCGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTTGCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAAACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACAGCCACGAGAACGCGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTAAAGGCGCGTAAAGCAGTGAATTC] [+] EMBL BX469717 [GAATGCTCGAGGCAGAATATCGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTTGCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAAACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACAGCCACGAGAACGCGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTAAAGGCGCGTAAAGCAGTGAATTC] consensusID : consensus_8581#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence [CTGGCGGGACGCTGGTGAATGATTGGCAAACACAGGAAACGAAAACAACCTGAACAGACACACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAAA] [+] EMBL BX609902 [CTGGCGGGACGCTGGTGAATGATTGGCAAACACAGGAAACGAAAACAACCTGAACAGACACACACAAGAGTATAAATACACAAACAAAACCAGCGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGATGATAGTAAGCCACGAGAACGCGAGTCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 CGNAGGGTTTTTTTACATATTATCTTACGATTGTTCCGGTGTTTATGAATTCGTTTTACT 60 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 --------------------------------------------------GAATGCTCGA 10 consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 ACTTGAAACACAACAAATAACTAGCAATGAATACACACACACACTCTGGCGATGGCGTGG 120 consensus_8581#1 ----------------------------------CCGCCCACGCGTCCGCCCACGCGTCC 26 consensus_8581#2 GGCAGAATAT---CGCGACGANTGTAGAATTGCTGGCTGGACGCTGGCCTGAAATGATTT 67 consensus_8581#3 --------------------------------CTGGCGGGACGCTGGT---GAATGATTG 25 consensus_8581#0 AATGGAAGGCAGGCGTGTGTACGATCGAATTGCTGGCTGGACGCTGGT---GAACGATTT 177 consensus_8581#1 GCATGTATTTTTTTTTCTTCAAATTAACTAGGTTTGTTTTTCCTTTTTCT-GCAAGAATT 85 * * * * * ** * consensus_8581#2 GCAAACACAGGGAAACTAAAACAACCTTAATATACATACACAAGAGGTATAAATACACAA 127 consensus_8581#3 GCAAACACAGG-AAACGAAAACAACCTGAACAGACACACACAAGAG-TATAAATACACAA 83 consensus_8581#0 GCAAACACAGG-AAACTAAAACAACCTTAATATACATACACAAGAG-TATAAATACACAA 235 consensus_8581#1 GCTTTTGTTAAGAACCGATGGCGGCGCGGGTACGGCGGTAGCAAAT-GGCGGACGCGGAC 144 ** ** * * * * * * * * * * * consensus_8581#2 ACAAGAACCAGGCGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGACTGATAGTACA 187 consensus_8581#3 ACAA-AACCAG-CGAGCAAAGGTGTGCGACCCACTCCCACGATTGATGA-TGATAGTA-A 139 consensus_8581#0 ACAA-AACCAG-CGAGCAAAGTTGTGCTACCTACTTCCTTGATTGATGA-TGATAGTA-A 291 consensus_8581#1 GTAGCTCCCTGTCCCCCGGA---CTGTAACCTACATGCACAGGAGAGCAATAATATCATC 201 * ** * * * * ** *** ** * ** * * *** * consensus_8581#2 GCCACGAGAACG-CGAGGTCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACGTA 246 consensus_8581#3 GCCACGAGAACG-CGAG-TCTAGCGCAAGAGGGAAGGCACATGATAAGCGGTGCGACCAA 197 consensus_8581#0 GCCCCAAGAACG-CGAG-TCTAGCGCAAGAGGTAATGCACATGATAAGCGGTGCGACTAA 349 consensus_8581#1 TCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGTGTTCCGCGATCGCTCGAGACACCAC 261 * * * * * * * *** *** * *** * * ** consensus_8581#2 AAG-GCGCGTAAAGCAGTGAATTC------------------------------------ 269 consensus_8581#3 A----------------------------------------------------------- 198 consensus_8581#0 AGGCGCGTAAACATGAATCAGTGTGCGTGTGTGTTTGTAGTCTCGAACGGTGGGGCCTCA 409 consensus_8581#1 CACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAAAGGAATTTGGAAAAGCGGGAAAAGG 321 consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 CTCTGCCGATCGCGAAACGGAGGTTAACAACGTGCAGAACAGCTAATGAATATAGGAAGA 469 consensus_8581#1 ACGAAC------------------------------------------------------ 327 consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 GGATTAGAAGGAGGAGAACACAACGAAACGAGAGCACGTTGCGTTGCGTCGATGCTTGTG 529 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 GTGTGCGTTGATTGGCGATCGCGCGAATGAAGAAGCGCTTGCGCGCTTTCTTATTTGACA 589 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 ATTTTCTTACATTAATTTTAATCATTATCTCTAACGCGCTTGAGAGCAGGCATCATCGTA 649 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 GACGGTGGTGTGTTGAAGTGAGGGCCGTCGGCATGTATTTTTTTTTCTTCAAATTAACTA 709 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 GGTTTGTTTTTCCTTTTTCTGCAAGAATTGCTTTTGTTAAGAACCGATGGCGGCGCGGGT 769 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 ACGGCGGTAGCAAATGGCGGACGCGGACGTAGCTCCCTGTCCCCCGGACTGTAACCTACA 829 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 TGCACAGGAGAGCAATAATATCATCTCAAAGTGTGTGTCCTGTGCAAAAACAACAGGGGT 889 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 GTTCCGCGATCGCTCGAGACACCACCACCGCGCGCTGTGTGTAACGTCTGAGTAGTGGAA 949 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 AGGAATTTGGAAAAGCGGGAAAAGGACGAACTAAGAATAATCAAACTTGCGAGAACACAT 1009 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 ------------------------------------------------------------ consensus_8581#3 ------------------------------------------------------------ consensus_8581#0 TTTTTGTACTGCATTATGCCCTTAAGTAATAAAACAACCTTGTTTAAGTGTAGTTCAAGC 1069 consensus_8581#1 ------------------------------------------------------------ consensus_8581#2 --------- consensus_8581#3 --------- consensus_8581#0 TGCGTTGGC 1078 consensus_8581#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||