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Anopheles gambiae
cluster # 8596 cluster # 8596       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8596#0 length = 926 sequences # 5  
consensus_8596#1 length = 804 sequences # 1  
consensus_8596#2 length = 796 sequences # 3  
consensus_8596#3 length = 709 sequences # 1  
consensus_8596#4 length = 623 sequences # 1  

consensusID : consensus_8596#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 926
fasta sequence
                              [GAAGAATCGCCCGAGG-----NGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTT-TGT-T-CT-TCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAG-GATATCGGTACTGGAAACGGAGCTAATTCAAATAACGG-AGCATATG-AAGGGAATGGACAG-TTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGG-ATCATATGAA-GGG-AATAAACAATTCAACGGCTATTAG-CAGCCT-TTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAA-TGTACCAGATGGATTAAACGCTTGTCAAAATA-TTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTACTCCTGTCATCATTCCAGCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAAAATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGAAAAAAATGTTTGAGTGAATGTTGAAAACATTGTCATATCCCTTGCTAACAGATAATACTTTTCATGACATTTTTAACATATATTGCACAAACGACATAATTCNATCCACAACAGACCCCATAAAGGTCATAAGATAAGTCAAGGTTAGAT]

[+] EMBL AL931180             [ AAGAATCGCCCGAGG     NGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTT TGT T CT TCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAG GATATCGGTACTGGAAACGGAGCTAATTCAAATAACGG AGCATATG AAGGGAATGGACAG TTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGG ATCATATGAA GGG AATAAACAATTCAACGGCTATTAG CAGCCT TTGACCGATTGCAATGACACTGATCCTTTANATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAA TGTACCAGATGGATTAAACGCTTGTCAAAATA TTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTAATCCTGTCATCATTCCAGCAATAGTCTCCAGTTAATGACAAACATACACAGCGTGTGTAATT                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AL693195             [gcAGAATTGCCC AGGTTAAAAGATGCTAACGTACAACCTG CAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTTATGTATACTATCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAGCGATATCGGTACTGGAAACGGAGCTAATTCAAATAACGGCAGCCTATGNCCCGGCNTGGACAGCNTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGCATCATATGAACGGGCAATAAACAATTCAACGGCTATTAGACAGCCTATTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAACTGTACCAGATGGATTAAACGCTTGTCACAATACTTGTACTTTCCATTCCACGCTGTATTAGTAATGGATACTACTCCTGTCATCATTCCAGCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTAC                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM635914             [                                                                           ccgCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTT TGT T CT TCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAG GATATCGGTACTGGAAACGGAGCTAATTCAAATAACGG AGCATATG AAGGGAATGGACAG TTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGG ATCATATGAA GGG AATAAACAATTCAACGGCTATTAG CAGCCT TTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAA TGTACCAGATGGATTAAACGCTTGTCAAAATA TTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTACTCCTGTCATCATTCCAGCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAAAATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAA                                                                                                                                                                                          ]
[+] EMBL BX624547             [                                                                                                                                                                                                                               TGAG GATATCGGTACTGGAAACGGAGCTAATTCAAATAACGG AGCATATG AAGGGAATGGACAG TTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGG ATCATATGAA GGG AATAAACAATTCAACGGCTATTAG CAGCCT TTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAA TGTACCAGATGGATTAAACGCTTGTCAAAATA TTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTTCTCCTGTCATCATTCCACCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAAAATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGAAAAAAATGTTTGAGTGAATGTTGAAAACATTGTCATATCCCTTGCTAACAGATAATACTTTTCATGACATTTTTAACATATATTGCACAAACGACATAATTCNATCCACAACAGACCCCATAAAGGTCATAAGATAAGTCAAGGTTAGAT]
[+] EMBL BX626849             [                                                                                                                                                                                                                                          GGTACTGGAAACGGAGCTAATTCAAATAACGG AGCATATG AAGGGAATGGACAG TTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGG ATCATATGAA GGG AATAAACAATTCAACGGCTATTAG CAGCCT TTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAA TGTACCAGATGGATTAAACGCTTGTCAAAATA TTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTACTCCTGTCATCATTCCAGCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAAAATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAA                                                                                                                                                                 ]


>consensus_8596#0 GAAGAATCGCCCGAGGNGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACG TACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAA CCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAG CCGACCAAAATGGATACCGGCCAACAATCACGTATGAGGATATCGGTACTGGAAACGGAG CTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTT TTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACAATTCAACGGCTATTAGCA GCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACG CTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAACGCTTGTCAAAATATT GTACTTTCCATTCCACGTTGTATTAGTAATGGATACTACTCCTGTCATCATTCCAGCAAT AGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACG ATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCG GAAGATTCAGCAGTAGATATCAATGAATCACAAAAAATACGGAAACCCCCACAAGAATAG GAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGAAAAA AATGTTTGAGTGAATGTTGAAAACATTGTCATATCCCTTGCTAACAGATAATACTTTTCA TGACATTTTTAACATATATTGCACAAACGACATAATTCNATCCACAACAGACCCCATAAA GGTCATAAGATAAGTCAAGGTTAGAT



consensusID : consensus_8596#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 804
fasta sequence
                              [GCAGAATTGCCCGNGGTTAAGTACAAAGTCTAGCGCAGCTCAACAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTATTAATTTATTACTATCACCGCGGTACAAAATGAAGATTTACGTTAGCTGTTATTACAATCGCTTTGATATGCTCTATGCCGCTACCGAACCACAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAAGCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAATACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCCAGCACGTACGGACCGCCTTGGGACAATGACGGGAACGGCGGCATACAACTACGAAGATGCTACACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGGACTTCACTACCGGCCAACGACTATTGGACACATGGAATCCGTGATGGNNGACCGAAACGTATGGACGCTACTTTGTACTTCTTCCCGNACGGATCGACAAGCAAGNTNNGTAANCCTATGAAGCCGANCCAACCAATGGATACGGCACAACAATACACCGTANGCACGANTATACGNCACAGGAAACCGCAAGCGTCANTCGCACAAANACGGAGCNTACNGNAACNGACNGACAGTACAAACGGCTATNCCGCACCCCCGACCNANGCTCTCCCATCACGGATNCCACATGGNCGCGAATACA]

[+] EMBL AL693700             [GCAGAATTGCCCGNGGTTAAGTACAAAGTCTAGCGCAGCTCAACAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTATTAATTTATTACTATCACCGCGGTACAAAATGAAGATTTACGTTAGCTGTTATTACAATCGCTTTGATATGCTCTATGCCGCTACCGAACCACAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAAGCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAATACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCCAGCACGTACGGACCGCCTTGGGACAATGACGGGAACGGCGGCATACAACTACGAAGATGCTACACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGGACTTCACTACCGGCCAACGACTATTGGACACATGGAATCCGTGATGGNNGACCGAAACGTATGGACGCTACTTTGTACTTCTTCCCGNACGGATCGACAAGCAAGNTNNGTAANCCTATGAAGCCGANCCAACCAATGGATACGGCACAACAATACACCGTANGCACGANTATACGNCACAGGAAACCGCAAGCGTCANTCGCACAAANACGGAGCNTACNGNAACNGACNGACAGTACAAACGGCTATNCCGCACCCCCGACCNANGCTCTCCCATCACGGATNCCACATGGNCGCGAATACA]


>consensus_8596#1 GCAGAATTGCCCGNGGTTAAGTACAAAGTCTAGCGCAGCTCAACAGAACAGTTGCATTGT TTGTGTGTTTTATTTTATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGT GCAGTGTTTAAACCAGATTTTAAAGAGTATTAATTTATTACTATCACCGCGGTACAAAAT GAAGATTTACGTTAGCTGTTATTACAATCGCTTTGATATGCTCTATGCCGCTACCGAACC ACAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAAGCAATCA TTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAATACCCCTCCT CGTCAAATGGGGAAAATTACCCAGCAACATCGCCAGCACGTACGGACCGCCTTGGGACAA TGACGGGAACGGCGGCATACAACTACGAAGATGCTACACGTACAACCTGCCAAATACTCA TTCGAGTACAACGTACAAGGACTTCACTACCGGCCAACGACTATTGGACACATGGAATCC GTGATGGNNGACCGAAACGTATGGACGCTACTTTGTACTTCTTCCCGNACGGATCGACAA GCAAGNTNNGTAANCCTATGAAGCCGANCCAACCAATGGATACGGCACAACAATACACCG TANGCACGANTATACGNCACAGGAAACCGCAAGCGTCANTCGCACAAANACGGAGCNTAC NGNAACNGACNGACAGTACAAACGGCTATNCCGCACCCCCGACCNANGCTCTCCCATCAC GGATNCCACATGGNCGCGAATACA



consensusID : consensus_8596#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 796
fasta sequence
                              [AAGAGTACAAAGTCTAGCGCAGCTCAAACAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCCTTGGGAAATGACGGGAACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAGGATATCGGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACNATTCAACGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGA]

[+] EMBL BX628509             [AAGAGTACAAAGTCTAGCGCAGCTCAAACAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCCTTGGGAAATGACGGGAACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAGGATATCGGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATC                                                                                                ]
[+] EMBL BX620977             [                                            TTTGTGTGTTTTATTTTATCTAGCTATTCTTGAATTAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCCTTGGGAAATGACGGGAACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGNC ACAATCACGTATGAGGATATCNGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACNGCTATC                                                                                                ]
[+] EMBL BX622429             [                                                               CTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCCTTGGGAAATGACGGGAACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAATGGATACCGGCCAACAATCACGTATGAGGATATCGGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACNATTCAACGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGA]


>consensus_8596#2 AAGAGTACAAAGTCTAGCGCAGCTCAAACAGAACAGTTGCATTGTTTGTGTGTTTTATTT TATCTAGCTATTCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCA GATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTT ATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTC ACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTAC AACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTAC CCAGCAACATCGCAGCAGTACGGACCGCCCTTGGGAAATGACGGGAACGGCGGATACAAC TACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTC ACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAACCGTTGGACGC TACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAGCCGACCAAAAT GGATACCGGCCAACAATCACGTATGAGGATATCGGTACTGGAAACGGAGCTAATTCAAAT AACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTTTTGAGCTAATT TAAATAACGGATCATATGAAGGGAATAAACNATTCAACGGCTATTAGCAGCCTTTGACCG ATTGCAATGACACTGA



consensusID : consensus_8596#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 709
fasta sequence
                              [ATGGACGAGGCTTTATCTAGCTATCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCTTGGGAAATGACGGGACACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGGACACATGGAATCCCGTGATGGTGACCGAAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTNGTAAAACTCATGAAAGCCGACCAAACATGGATACCCGGCCCAACAAATCACGTATTGAAGCGATATCGGGTACTGNAAACCNGAGCTAATTCAAATTACGGANCNTATGAAGGAATGACCNACTCAACGGCTNATCANTCAACTTTGACTAATTTCACAACGGATCATTTCANNCGNA]

[+] EMBL AL934610             [ATGGACGAGGCTTTATCTAGCTATCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATTTACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCACGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCTTGGGAAATGACGGGACACGGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAGACTTCACCTCCGGCAACGACTTTGGGACACATGGAATCCCGTGATGGTGACCGAAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTNGTAAAACTCATGAAAGCCGACCAAACATGGATACCCGGCCCAACAAATCACGTATTGAAGCGATATCGGGTACTGNAAACCNGAGCTAATTCAAATTACGGANCNTATGAAGGAATGACCNACTCAACGGCTNATCANTCAACTTTGACTAATTTCACAACGGATCATTTCANNCGNA]


>consensus_8596#3 ATGGACGAGGCTTTATCTAGCTATCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCA GTGTTTAAACCAGATTTTAAAGAGTTTAATTTTTCTTCACCGCGGTACAAAATGAAGATT TACGTTGCTGTTATTACAATCGCTTTGATTGCTCTTGCCGCTACCGAACCACCAGCTCCA CGTAACGGTTTCACTTCTTCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGG AATAATGGTTACAACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAAT GGGGAAAATTACCCAGCAACATCGCAGCAGTACGGACCGCCTTGGGAAATGACGGGACAC GGCGGATACAACTACGAAGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAAC GTACAAGACTTCACCTCCGGCAACGACTTTGGGACACATGGAATCCCGTGATGGTGACCG AAACCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTNGTAAAACTC ATGAAAGCCGACCAAACATGGATACCCGGCCCAACAAATCACGTATTGAAGCGATATCGG GTACTGNAAACCNGAGCTAATTCAAATTACGGANCNTATGAAGGAATGACCNACTCAACG GCTNATCANTCAACTTTGACTAATTTCACAACGGATCATTTCANNCGNA



consensusID : consensus_8596#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence
                              [GAATCGGCACGAGGNGTCGGCCAACAATCACGTATGAGGATACTCGGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACAATTCAACGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAACGCTTGTCAAAATATTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTTCTCCTGTCATCATTCCACCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAGAAGATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGANACAGAAACTGTTNTGAGTGAATG]

[+] EMBL BX469573             [GAATCGGCACGAGGNGTCGGCCAACAATCACGTATGAGGATACTCGGTACTGGAAACGGAGCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACAATTCAACGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAACGCTTGTCAAAATATTGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTTCTCCTGTCATCATTCCACCAATAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTACGATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGCGGAAGATTCAGCAGTAGATATCAATGAATCACAAAGAAGATACGGAAACCCCCACAAGAATAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGANACAGAAACTGTTNTGAGTGAATG]


>consensus_8596#4 GAATCGGCACGAGGNGTCGGCCAACAATCACGTATGAGGATACTCGGTACTGGAAACGGA GCTAATTCAAATAACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCAGTAACCT TTTGAGCTAATTTAAATAACGGATCATATGAAGGGAATAAACAATTCAACGGCTATTAGC AGCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATATTTCCTGGAAAC GCTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAACGCTTGTCAAAATAT TGTACTTTCCATTCCACGTTGTATTAGTAATGGATACTTCTCCTGTCATCATTCCACCAA TAGCCTCCAGTTAATGACAAACATACACAGCGTGTGTAATTTATACAAGCACAAATCTAC GATCCGACCCTTCCAATACTTACTTAACACATTTTTGATCAAAGCCAAATTTGATCTAGC GGAAGATTCAGCAGTAGATATCAATGAATCACAAAGAAGATACGGAAACCCCCACAAGAA TAGGAACTACATTAAGAACGGAACAAAAAGGCTCACCCAAAGGGAAAATTCAAGAACGAN ACAGAAACTGTTNTGAGTGAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8596#1      ------------------------------------------------------------
consensus_8596#3      ------------------------------------------------------------
consensus_8596#2      ------------------------------------------------------------
consensus_8596#0      GAAGAATCGCCCGAGGNGATGCTAACGTACAACCTGCCAAATACTCATTCGAGTACAACG 60
consensus_8596#4      ------------------------------------------------------------
                                                                                  

consensus_8596#1      ---------------------------------GCAGAATTGCCCGNGGTTAAGTACAAA 27
consensus_8596#3      ------------------------------------------------------------
consensus_8596#2      -------------------------------------------------AAGAGTACAAA 11
consensus_8596#0      TACAAGACTTCACCTCCGGCAACGACTTTGGACACATGGAATCCCGTGATGGTGACCGAA 120
consensus_8596#4      ------------------------------------------------------------
                                                                                  

consensus_8596#1      GTCTAGCGCAGCTCAA-CAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTAT 86
consensus_8596#3      ------------------------------------ATGGACGAGGCTTTATCTAGCTAT 24
consensus_8596#2      GTCTAGCGCAGCTCAAACAGAACAGTTGCATTGTTTGTGTGTTTTATTTTATCTAGCTAT 71
consensus_8596#0      CCGTTGGACGCTACTTTGTTCTTCTTCCCGACGGTCGCAAGCAAGTTGTAAACTATGAAG 180
consensus_8596#4      ---------------------------------------------------------GAA 3
                                                                                * 

consensus_8596#1      TCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGA 146
consensus_8596#3      -CTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGA 83
consensus_8596#2      TCTTGAATAAGGAAGCATCAGTGTACTTGAACGTGCAGTGTTTAAACCAGATTTTAAAGA 131
consensus_8596#0      -CCGACCAAAATGGATACCGGCCAACAATCACGTATGAGGAT-A-TCGGTACTGGAAACG 237
consensus_8596#4      -TCGGCACGA---GGNGTCGGCCAACAATCACGTATGAGGAT-ACTCGGTACTGGAAACG 58
                               *        * *   **    ****     * * *  *   * *  ***  

consensus_8596#1      GTATTAATTTATTACTATCACCGCGGTACAAAATGAAGATTTACG--TTAGCTGTTATTA 204
consensus_8596#3      GT-TTAATTTTTCT---TCACCGCGGTACAAAATGAAGATTTACG--TT-GCTGTTATTA 136
consensus_8596#2      GT-TTAATTTTTCT---TCACCGCGGTACAAAATGAAGATTTACG--TT-GCTGTTATTA 184
consensus_8596#0      GAGCTAATTCAAAT-----AACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCA 292
consensus_8596#4      GAGCTAATTCAAAT-----AACGGAGCATATGAAGGGAATGGACAGTTCAACGGCTATCA 113
                      *   *****          * **  * * *  * *   **  **   *   * * *** *

consensus_8596#1      CAATCGCTTTGATATGCTCTATGCCGCTACCGAACCAC-AGCTCCACGTAA-CGGTTTCA 262
consensus_8596#3      CAATCGCTTTGAT-TGCTCT-TGCCGCTACCGAACCACCAGCTCCACGTAA-CGGTTTCA 193
consensus_8596#2      CAATCGCTTTGAT-TGCTCT-TGCCGCTACCGAACCACCAGCTCCACGTAA-CGGTTTCA 241
consensus_8596#0      GTAACCTTTTGAGCTAATTT----AAATAACGGATCATATGAAGGGAATAAACAATTCAA 348
consensus_8596#4      GTAACCTTTTGAGCTAATTT----AAATAACGGATCATATGAAGGGAATAAACAATTCAA 169
                        * *  *****  *  * *       ** ** * **   *       *** *  **  *

consensus_8596#1      CTTCT-TCATCGAGCAACTATCTACCTCCCAAGCAATCATTCAATGGGAATAATGGTTAC 321
consensus_8596#3      CTTCT-TCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTAC 252
consensus_8596#2      CTTCT-TCATCGAGCAACTATCTACCTCCCAACCAATCATTCAATGGGAATAATGGTTAC 300
consensus_8596#0      CGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATAT 408
consensus_8596#4      CGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGATCCTTTAGATATTGTAGATAT 229
                      *  ** * * *   *    * * *   *     ** * ** *  * *  **  * * ** 

consensus_8596#1      AACTATAACTCAAACGACAATGGTTACAA-TACCCCTCCTCGTCAAATGGGGAAAATTAC 380
consensus_8596#3      AACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTAC 312
consensus_8596#2      AACTATAACTCAAACGACAATGGTTACAACTACCCCTCCTCGTCAAATGGGGAAAATTAC 360
consensus_8596#0      TTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAAC-GC 467
consensus_8596#4      TTCCTGGAAACGCTTGCAACGCACTGTAGCTATACGAATGTACCAGATGGATTAAAC-GC 288
                        *    *  *    *  *     *  *  **  *        ** ****   ***   *

consensus_8596#1      CCAGCAACATCGCCAGCACGTACGGACCGCCTTGGGACAATGACGGGA-ACGGCGGCATA 439
consensus_8596#3      CCAGCAACATCGC-AGCA-GTACGGACCGCCTTGGGA-AATGACGGGACACGGCGG-ATA 368
consensus_8596#2      CCAGCAACATCGC-AGCA-GTACGGACCGCCCTTGGGAAATGACGGGA-ACGGCGG-ATA 416
consensus_8596#0      TTGTCAAAATATTGTACT-TTCCATTCCACGTTGTATTAGTAATGGAT-AC-------TA 518
consensus_8596#4      TTGTCAAAATATTGTACT-TTCCATTCCACGTTGTATTAGTAATGGAT-AC-------TT 339
                          *** **      *   * *   ** *  *     * * * **   **       * 

consensus_8596#1      CAACTACGAAGATGCTACACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAG 499
consensus_8596#3      CAACTACGAAGATGCTA-ACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAG 427
consensus_8596#2      CAACTACGAAGATGCTA-ACGTACAACCTGCCAAATACTCATTCGAGTACAACGTACAAG 475
consensus_8596#0      CTCCTGTCATCATTCCA--GCAATAGCCT-CCAGTTAATGACAAACATACACAGCGTGTG 575
consensus_8596#4      CTCCTGTCATCATTCCA--CCAATAGCCT-CCAGTTAATGACAAACATACACAGCGTGTG 396
                      *  **   *  ** * *     * * *** ***  ** * *      ****  *     *

consensus_8596#1      GACTTCACTACCGGCCAACGACTATTGGACACATGGAATCC-GTGATGGNNGACCGAAAC 558
consensus_8596#3      -ACTTCACCTCCGGC-AACGACTTTGGGACACATGGAATCCCGTGATGGTG-ACCGAAAC 484
consensus_8596#2      -ACTTCACCTCCGGC-AACGACT-TTGGACACATGGAATCCCGTGATGGTG-ACCGAACC 531
consensus_8596#0      TAATTTA-TACAAGC--ACAAATCTACGATCC---GACCCTTCCAATACTTACTTAACAC 629
consensus_8596#4      TAATTTA-TACAAGC--ACAAATCTACGATCC---GACCCTTCCAATACTTACTTAACAC 450
                       * ** *   *  **  ** * * *  **  *   **  *     **         *  *

consensus_8596#1      GTATGGACGCTACTTTGTACTTCTTCCCGNACGGATCGACAAGCAAGNTNNGTAANCCTA 618
consensus_8596#3      CGTTGGACGCTACTTTGTTCTTCTTCCCGAC--GGTCG-CAAGCAAGTTNGTAAAACTCA 541
consensus_8596#2      GT-TGGACGCTACTTTGTTCTTCTTCCCGAC--GGTCG-CAAGCAAGTTGT---AAACTA 584
consensus_8596#0      ATTTTTGATCAAAGCCAAATTTGATCTAGCG--GAAGATTCAGCAGTAGAT----ATCAA 683
consensus_8596#4      ATTTTTGATCAAAGCCAAATTTGATCTAGCG--GAAGATTCAGCAGTAGAT----ATCAA 504
                         *     * *        **  **  *    *       ****              *

consensus_8596#1      TGAAGCCGANCCAACCAATGGATA--CGGCACAACAATA--CACCGTANGCACGANTATA 674
consensus_8596#3      TGAAAGCCGACCAAACA-TGGATACCCGGCCCAACAAAT--CACGTATTGAAGCGATATC 598
consensus_8596#2      TGAAGCCGACCAAAA---TGGATAC-CGGC-CAACAAT---CACG---TATGAGGATAT- 632
consensus_8596#0      TGAATCACAAAAAA--TACGGAAAC-CCCCACAAGAATAGGAACTACATTAAGAACGGAA 740
consensus_8596#4      TGAATCACAAAGAAGATACGGAAAC-CCCCACAAGAATAGGAACTACATTAAGAACGGAA 563
                      ****        **     *** *  *  * *** **     **                

consensus_8596#1      CGNCACAGGAAACCGCAAGCGTCANTCGCACAAANACGGAGC--NTACNGNAACNGACNG 732
consensus_8596#3      GGGTACTGNAAACCN-GAGC-TAATTCA---AATTACGGANC--NTATGAAG--GAATGA 649
consensus_8596#2      CGGTACTGGAAACGG--AGC-TAATTCA---AATAACGGAGC--ATATGAAGG-GAATGG 683
consensus_8596#0      CAAAAAGGCTCACCCAAAGGGAAAATTC---AAGAACGAAA---AAAATGTTT-GAGTGA 793
consensus_8596#4      CAAAAAGGCTCACCCAAAGGGAAAATTC---AAGAACGANACAGAAACTGTTNTGAGTGA 620
                          *  *   **    **    * *     **  ***        *             

consensus_8596#1      ACAGTACAAACGGCTATNCCGCACCCCC-GACCNANGCTCTCCCATCACGGATNCCACAT 791
consensus_8596#3      CCNACTCAACGGCTNATCANTCAACTTT-GACTAAT--TTCACAACGGATCATTTCANNC 706
consensus_8596#2      ACAGTTCAA-CGGCTATCAGTAACCTTTTGAGCTAATTTAAATAACGGATCATATGAAGG 742
consensus_8596#0      ATGTTGAAAACATTGTCATATCCCTTGCTAACAGATAATACTTTTCATGACATTTTTAAC 853
consensus_8596#4      ATG--------------------------------------------------------- 623
                                                                                  

consensus_8596#1      GGNCGCG-AATACA---------------------------------------------- 804
consensus_8596#3      GNA--------------------------------------------------------- 709
consensus_8596#2      GAATAAACNATTCAACGGCTATTAGCAGCCTTTGACCGATTGCAATGACACTGA------ 796
consensus_8596#0      ATATATTGCACAAACGACATAATTCNATCCACAACAGACCCCATAAAGGTCATAAGATAA 913
consensus_8596#4      ------------------------------------------------------------
                                                                                  

consensus_8596#1      -------------
consensus_8596#3      -------------
consensus_8596#2      -------------
consensus_8596#0      GTCAAGGTTAGAT 926
consensus_8596#4      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)