These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1200 fasta sequence [CCGCGGACGCGTGGGCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG-AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC-TTC-TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAACAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACCGTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGTTGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACTATCGCAAN] [+] EMBL BM592590 [CCGCGGACGCGTGGGCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCA ] [+] EMBL BX627997 [ CTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAAGTTTGAGGATATAGCTGATTTTGTCGAG AANGACATCTTTCTTTTCNGAATCCGA ] [+] EMBL BX606305 [ CAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTCCACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCTAGGAGTGAAGAAGCTTGTAACACGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGAT ] [+] EMBL BM618729 [ ccgCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTG ] [+] EMBL BX626397 [ TCGTCTCTGAAACGATGCGTNCTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGG AAAGTTTGAGGATATAGCTGACTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAACAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACCGTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGTTGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACTATCGCAAN] [-] EMBL AGA283649 [ AAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATC TTC TGTCGGAATCCGAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTAATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAGGACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGATTAAAGGTGCAGCGCACGCACAAGCAGGAAGAAAATTTGAAAAAAAA ] [+] EMBL BX628960 [ nTTTTGTCGAGAAAGGACATC TTC TTTCGGAATCCGAAGCCTATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTGGCCGAAAATCAATCATCCTTACGATTGCACGAGATTGGTCCTCGNATTACAATGCTGNTAATGAAGATANAGGACGATCTTATGAC ] consensusID : consensus_8624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 738 fasta sequence [TTTTGCCGGTAGAAGAGTTGTGTC-GGAAAAGTTGTTAGT-GAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT-TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT--TTTGTTCA-TTTGTCCGGATT-CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG-GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT-GG-CAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAA-GAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATT-TGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGT-CTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAGTTTGAGGAT] [+] EMBL BX621392 [TTTTGCCGGTAGAAGAGTTGTGTC GGAAAAGTTGTTAGT GAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GG CAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAA GAGTGCTTCAAAACGGCCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATT TGAAGCTAATGGCTAGCACGTTTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGT CTCTGAAACGATGCGTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACAGTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAACTTGGGAAAGTTTGAGGAT] [+] EMBL BX624374 [ AGTTGTGTCTGGAAAAGTTGTTAGTAGAAAGCCCACTCATGAAAAAGAAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTTGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATANNACGCATGCCGAA GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGG CAAAGGATG ] [+] EMBL AL931560 [ cgagg ttAAAAG TGTTAGT GAAAGCCCACTCATG AAAAGAAAAGCCGAAAGCCTC ACACAAACGGAA CG CCAAAGGTGGAAGCACCGGTTGAAGATGAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGCTCATCGATTAGCAGACTGTCTCGTGATTNTCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTCTTTGGNCATTTTGTCCGGATTACTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAGTGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GGCCAAAGGATGTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAACGAGTGCTTCAAAACGGGCCCACTGGTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTANGAAGCTAATGGCTAGCACGTNTCAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTACTCTGAAACGATGCGTACTGNTATCATACAACCGGTTAAGCAAATTG ] [+] EMBL AGA284937 [ TT TCCGCCGCATGATGGAACCTTTCACAGCATCGAACCTTCGTGAGAGACGCATCAACAAGGTGAAAGAT TTTGTTCA TTTGTCCGGATT CTTCCACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATACGCATGCCGAAG GGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTT GG CAAAGGATGTTATTAGCAACTCGCGCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8624#0 ------CCGCGGACGCGTGGG--CGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAG 52 consensus_8624#1 TTTTGCCGGTAGAAGAGTTGTGTCGGAAAAGTTGTTAGTGAAAGCCCACTCATGAAAAAG 60 * * ** * ** * ************************************* consensus_8624#0 AAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGAT 112 consensus_8624#1 AAAAGCCGAAAGCCTCAACACAAACGGAACCGCCCAAAGGTGGAAGCACCGGTTGAAGAT 120 ************************************************************ consensus_8624#0 GAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGC 172 consensus_8624#1 GAACCTGCTGCGATTAAAAATGCTCCACACTCGTTCGTCATACGACGCGGAGAACGATGC 180 ************************************************************ consensus_8624#0 TCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCG 232 consensus_8624#1 TCATCGATTAGCAGACTGTCTCGTGATTTCCGCCGCATGATGGAACCTTTCACAGCATCG 240 ************************************************************ consensus_8624#0 AACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTC 292 consensus_8624#1 AACCTTCGTGAGAGACGCATCAACAAGGTGAAAGATTTTGTTCATTTGTCCGGATTCTTC 300 ************************************************************ consensus_8624#0 CACGTTTCGCACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATA 352 consensus_8624#1 CACGTTTCACACATGTGCGTATTTTCGCTATCGTCGCAAACACTGTCGCTCAAGATAATA 360 ******** *************************************************** consensus_8624#0 CGCATGCCGAAGGGTCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGAT 412 consensus_8624#1 CGCATGCCGAAGGGCCCCACCCTGACGTTCAAGGTGTACCAGTACACTTTGGCAAAGGAT 420 ************** ********************************************* consensus_8624#0 GTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTG 472 consensus_8624#1 GTTATTAGCAACTCGCGCAAGCAGTTTGTAGATGAAGAGTGCTTCAAAACGGCCCCACTG 480 ************************************************************ consensus_8624#0 GTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTT 532 consensus_8624#1 GTCATATTGAACAGCTTCAGTGGAGAAGGGAAACATTTGAAGCTAATGGCTAGCACGTTT 540 ************************************************************ consensus_8624#0 CAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGC 592 consensus_8624#1 CAAAACATGTTTCCTCCGATTAATCTCTCCACGATAAAACTCTCGTCTCTGAAACGATGC 600 ************************************************************ consensus_8624#0 GTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACA 652 consensus_8624#1 GTACTGCTATCATACAACCCGGTAAGCAAATTGATCGATCTTCGACACTACTCTGTCACA 660 ************************************************************ consensus_8624#0 GTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAAC 712 consensus_8624#1 GTAGTTCCGGTAAATTTGAATCGAGGAGTGAAGAAGCTTGTAACGCGCAACATACCAAAC 720 ************************************************************ consensus_8624#0 TTGGGAAAGTTTGAGGATATAGCTGATTTTGTCGAGAAAGGACATCTTCTTTCGGAATCC 772 consensus_8624#1 TTGGGAAAGTTTGAGGAT------------------------------------------ 738 ****************** consensus_8624#0 GAAGCCGATGACGAAGAAGCACACGTTGTGCTAGCGCAGAATCTAAAGTGTGGAAATTTG 832 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 GCCGAAAATCAATCATCTTTACGATTGCACGAGATTGGTCCTCGTATTACGATGCGGTTA 892 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 ATGAAGATAGAGGACGATCTTATGACGGGCGAAGTACTCTATCACGACTATATCGAAAAG 952 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 GACGCGATCGAAGTGGAAGCTCTCCGCAAGAAGCGTGCTCAGCAGCGCCGACTAAAGGAA 1012 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 CAGCGCAAGCACAAGCAGGAAGAAAATTTGAAAAAGAAAGAAAACGACAAAAAGAGCACC 1072 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 GTGCTAAGACGTCCAAGCAAGGCAAGAGCGGCGAAATAACGGAACAGGACAAGTTGCTGT 1132 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 TGAAAGATGCGGAGGAAGCTGTGGGGCGATATATTCGGATGAGGATGACCCCCNAATACT 1192 consensus_8624#1 ------------------------------------------------------------ consensus_8624#0 ATCGCAAN 1200 consensus_8624#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||