These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8625#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1639 fasta sequence [CCGCCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC-TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC-GACT-GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT-GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC-GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT-CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAGTTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAACCGCTGTAAGGCCTTCTGCGCT] [+] EMBL BM584683 [ CCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGGCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCCTTTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCCGGACTGGCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAGCCTGCCCGGATGTGGTTGAATGAGTTCGTCC ] [+] EMBL BM657563 [ CCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGCTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACG ] [+] EMBL BM587794 [ccggacCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGTTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTATTTGAATTTTGTTGCAAAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAACTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTCGGAATGCCGTGTGCAACTACA ] [+] EMBL BM578771 [ ccgCGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGTTACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTGTGATTTTTATTTGAATTTTGTTGCAAAGCAGTGTACTTAATCCGTGTGAGCATAATGTGGAAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGCCGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCCTCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAACTTCCTGCTCGCTTCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGACGGCGTGCAGTACGATCCCACTACAACCTCGTCTCC TTTTGTAGAGGTAACGACAGCTCCTCCGACCACGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATC ] [+] EMBL BX616149 [ TCCTCCTACCATGCTGGCACCGCTCCGTACGGCC GACT GCATCGGGCCGGACAATCGCGAAGGATACTGCATAAATATTCGAAGCTGCCCGGATGT GTTGAATGAGTTCGTCCAGCGTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACACACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAG ] [+] EMBL BX615420 [ GTCAGCGCGACCCACAGTACGTGCAGTACATCCGCCAGTC GAATGCCGTGTGCAACTACATCCAGCCAAACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACTGCACCACCGACGGCTCCTCCGCCACCGCCGCCACCGCCACCAGCACCGGTTACCCAAGCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCC ] [+] EMBL BM622393 [ ccgAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTAACCCCCGAAACGGGCTGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAACTGAATGGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAGTGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCAGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACACACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACTCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGACGGCGGCA ] [+] EMBL BX619191 [ GTTCGCTCATTACCAAGCGCCACG ACTGACGGCGGCTCACTGTATTCGGCGCGATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAAAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGTAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATTCCCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGAC ] [+] EMBL BM579501 [ ccGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACACATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAAAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGTAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAGTTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGT ] [+] EMBL BM649290 [ ccgccagTACGAATCTCATCCATCGTATGACAAAAAGGACGGACATACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCCATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTCGTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTGCAGATT CCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTGTTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAGGATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGGTTCGGTACCGAGTTCCACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTGCCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAACCGCTGTAAGGCCTTCTGCGCT] consensusID : consensus_8625#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACGGCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAGGCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGCTGCGGATACAGCACGGT] [+] EMBL BX611335 [AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACGGCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAGGCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGCTGCGGATACAGCACGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8625#0 CCGCCGCGGGAAGGACGGCCGTTTTCGTCCTCCGTGTGCGGTACAGAATGTGCTAAAAGC 60 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TACAGCACGCAGCGCCATTAAACAAGTGTCCCAGTGATCGCGTCGATCAAGTAGAGAGTG 120 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TGATTTTTAATTGAATTTTGTTGCATAGCAGTGTACTTAATCCGTGTGAGCATAATGTGG 180 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 AAGTTAATGTTCCTTATTCTTACCTGCCTGGTTATAAGCCAAGTGCAACCGCAAGCCGGC 240 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CGATCTTGCTATACCCCGAACGGTCAGATAGGCGTGTGTCAGGTGTTCCAGTACTGTGCC 300 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TCCCTGATCCAGTTGTACCAGTACAACAGGAACCAGGAGACGGTAAATTTCCTGCTCGCT 360 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TCCCAGCGCAGCTGCGGCAATCGCAACTTTAACGGCAGCCCAGTGCTCTGCTGCAGCGAC 420 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GGCGTGCAGTACGATCCCACTACAACCTCGTCTCCTTTTGTAGAGGTAACGACAGCTCCT 480 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CCGACCACGCTGGCACCGCTCCGTACGGCCGACTGCATCGGGCCGGACAATCGCGAAGGA 540 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TACTGCATAAATATTCGAAGCTGCCCGGATGTGTTGAATGAGTTCGTCCAGCGTCAGCGC 600 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GACCCACAGTACGTGCAGTACATCCGCCAGTCGAATGCCGTGTGCAACTACATCCAGCCA 660 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 AACGTGTGCTGCCCGCTGCAGAAGTCAGCTCCGCCTGCACCACCGACCGCACCACCTACT 720 consensus_8625#1 -------------------AGAAGTCAGCTCCGCCGGCACCACCGACCGCACCACCTACG 41 **************** *********************** consensus_8625#0 GCACCACCGACGGCTCCTCCGCCA---CCGCCGCCACCGCCACCAGCACCGGTTACCCAA 777 consensus_8625#1 GCACCACCTACGGCACCACCGACGGCTCCTCCGCCACCGCCACCAGCACCGGTCACCCAG 101 ******** ***** ** *** * ** *********************** ***** consensus_8625#0 GCTCCACCTGCACCAGCGCCGTCCAGCGGGCCGGCTGAGTTGCTTACGCCGGAAACGGGC 837 consensus_8625#1 GCTCCACCCGCACCAGCGCCGTCCAGCGGGCCGGCGGAGTCGCTAACGCCGGAAACGGGC 161 ******** ************************** **** *** *************** consensus_8625#0 TGCGGATACAGCACGGTGCAGCACAACCGTGTGGTTGGCGGTGTTCCGGCCGAATTGAAT 897 consensus_8625#1 TGCGGATACAGCACGGT------------------------------------------- 178 ***************** consensus_8625#0 GGATGGCCCTGGATGGCGCTGGTCGGGTATAAGAATACGCTCGGCGAGGTTTCGTTCAAG 957 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TGTGGCGGTTCGCTCATTACCAAGCGCCACGTACTGACGGCGGCTCACTGTATTCGGCGC 1017 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GATCTGTCGTCGGTTCGATTGGGTGAGCACGATACGTCCACCGATGCGGAAACGAAACAC 1077 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 ATCGACGTACCCGTCGTTCGCTACGAATCTCATCCATCGTATGACAAAAAGGACGGACAT 1137 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 ACCGATTTGGCCGTGCTGTACATGGAGTTTGAGGTGCAGTTCAGTGATGCGATCAAGCCC 1197 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 ATCTGTCTGCCCTTGAGCGAGACGATCCGCAGCAAGAACTTCATCGGCTACACCCCGTTC 1257 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GTGGCGGGCTGGGGACGCACCCAGGAGGGTGGCAAGTCGGCCAACGTGCTGCAGGAGCTG 1317 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CAGATTCCCATCATCGCGAACGACGAGTGCCGCACGCTGTACGACAAGATCGGGAAGGTG 1377 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TTTTCGCAGAAGCAGTTCGACAACGCGGTCATGTGTGCCGGTGTGATCGAGGGCGGCAAG 1437 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 GATTCGTGCCAGGGCGACAGTGGTGGGCCGCTGATGTTGCCGCAACGATTCGGTACCGAG 1497 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 TTTTACTACTACCAGGTCGGCATCGTGTCGTACGGTATCGGATGCGCTCGTGCGGAAGTG 1557 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CCCGGCGTTTATACGCGCGTGGCCAGCTTCGTCGATTGGATACAGCAGAAGGTTGCGGAA 1617 consensus_8625#1 ------------------------------------------------------------ consensus_8625#0 CCGCTGTAAGGCCTTCTGCGCT 1639 consensus_8625#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||