These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1283 fasta sequence [CCGCGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC-GGGTGGTTA-CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAAGCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATGATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACGGAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGCTGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTGCCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCTTGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTAGTGCGACACACACACATAAACCTTCCCTTATCGT] [+] EMBL BM628720 [CCGCGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGGAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGGCGCTTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGATGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCGCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAG ] [+] EMBL BM581104 [ ccgGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC GGGTGGTTACCCAGGGAGATGT ] [+] EMBL BX603915 [ GAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAAGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATG ] [+] EMBL BM642111 [ ccgGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGC ] [+] EMBL BX624936 [ GACTTTAAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACTCGACTCGGACAGCTGTCTGCAGACGCNCCTCGGAATGGACAGTGGATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAGGAGAAGTCGATGCGCGGGAAGCTTGATCACACCCGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTC GGGTGGTTA CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAA ] [+] EMBL BX614224 [ ATGGGAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGCTTCCGG ] [+] EMBL BX618925 [ GGAGCTTCCGGCGCATGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGGCGGCGCAGCAGGACCACGGTGAAGGTACCGATGCCAGAACCGGACGAGGACAATTCCATACGCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAAGGGACAGTGGAACGAagg ] [+] EMBL BX609140 [ CGAGTATGTACTAACAGCGGCACATTGTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACACAGTGTCGGGGTGGTTA CCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTCACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAAGCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATGATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACGGAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGCTGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTGCCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCTTGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTAGTGCGACACACACACATAAACCTTCCCTTATCGT] [+] EMBL BX610351 [ gGGAAGACACTGGAACGTATCTCGCTGGAACGGTGCCAGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAAATACCTGGACTATTACCATCACGGG ] consensusID : consensus_8629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence [CCANGTGTTAAATNCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGACAGTGACCACGGTGAAGGTACCGATGCCAGAACCGGACTGANGAAAACTGCCATACGTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCTGTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCGTTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT] [+] EMBL AL697492 [CCANGTGTTAAATNCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCAGACAGTGACCACGGTGAAGGTACCGATGCCAGAACCGGACTGANGAAAACTGCCATACGTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCTGTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCGTTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT] consensusID : consensus_8629#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCCAGCAGGACCACGGTGGAAGGTACCGCATGCCAGAACCGGACGAGGACAATTCCATACT] [+] EMBL AL934588 [TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAATTAGTGAAAAATTCCGTTGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTATTGTACTACTCTGCATAATACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGTGGACCATCGTGCAAACTTCTACCGGAACGCAGGGATGGTGTGTGGGTTTGAAACACTGTCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCTTATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGACATTCGTCGGCGCCAGCAGGACCACGGTGGAAGGTACCGCATGCCAGAACCGGACGAGGACAATTCCATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8629#0 CCG--CGGACGCGTGGGGCGTGAGCTACGTAATAGACTTTAAATTAGTGAAAAATTCCGT 58 consensus_8629#2 TCGGCCGAGTGTTCTCAGCGTGAGCTACGTAATAGACTTTAA-TTAGTGAAAAATTCCGT 59 consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 TGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTA 118 consensus_8629#2 TGTTTTCAGTACTCACTTTTGTGATTGTTGTGTTTGTAGGTAGTATGGCAAACGGTTTTA 119 consensus_8629#1 ----------------------------------------CCANGTGTTAAATNCGTTGT 20 ** *** ** consensus_8629#0 TTGTACTACTCTGCATAAT-ACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGT 177 consensus_8629#2 TTGTACTACTCTGCATAAT-ACAGCTGTCTTTTGCCCAAGGGAAAGTGTCGTTTGGGCGT 178 consensus_8629#1 TTTCAGTACTCACTTTTGTGATTGTTGTGTTT--------GGAAAGTGTCGTTTGGGCGT 72 ** * ***** * * * * *** *** ******************** consensus_8629#0 GGACCATCGTGCAGAACTTCTACCGGAACGCAGGG-ATGGTGTGTGGGTTTGAAACACTG 236 consensus_8629#2 GGACCATCGTGCA-AACTTCTACCGGAACGCAGGG-ATGGTGTGTGGGTTTGAAACACTG 236 consensus_8629#1 GGACCATCGTGCAGAACTTCTACCGGAACGCAGGGGATGGTGTGTGGGTTTGAAACACTG 132 ************* ********************* ************************ consensus_8629#0 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 296 consensus_8629#2 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 296 consensus_8629#1 TCCCAAGCTGAAGGTGATCGACGAGAAACCGTACATAAGTCGTCACGAGATGCATCTGCT 192 ************************************************************ consensus_8629#0 TATTGGTGCTTCCGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 356 consensus_8629#2 TATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 356 consensus_8629#1 TATTGGTGGTTCGGGCGCGTGTCCAGTGAATTCGGAGCAATATTGCTGTGCCGAAGCAGA 252 ******** *** *********************************************** consensus_8629#0 CATTCGTCGGCGC-AGCAG-GACCACGGTG-AAGGTACCG-ATGCCAGAACCGGAC-GAG 411 consensus_8629#2 CATTCGTCGGCGCCAGCAG-GACCACGGTGGAAGGTACCGCATGCCAGAACCGGAC-GAG 414 consensus_8629#1 CATTCGTCGGCGCAGACAGTGACCACGGTG-AAGGTACCG-ATGCCAGAACCGGACTGAN 310 ************* *** ********** ********* *************** ** consensus_8629#0 GACAATT-CCATACTCGACTCGGACAGCTGTCTGCAGACGCACCTCGGAATGGACAGTGG 470 consensus_8629#2 GACAATT-CCATACT--------------------------------------------- 428 consensus_8629#1 GAAAACTGCCATAC-------GTACGAATTCCAGTACANGCGTAGTCTGACAGACTGTCT 363 ** ** * ****** consensus_8629#0 ATCGATTGGGCGCCCATCGCTTGATTCTTCGTTTGGTGTGTTTATAGCCTACAAGGGTAG 530 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 GTCAGGANNNGNGCTCAGGTNNATAGTCACATGTGGATCCANAGTCGCGTCTCGCATCCG 423 consensus_8629#0 GAGAAGTCGATGCGCGGGAAGCTTGATCA-CACCCGAGTATGTACTAACAGCGGCACATT 589 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 TTCGATTCGTGTCGTGTTGGATGTGTCTATCAACCTATCAGAGGGT-------------- 469 consensus_8629#0 GTGTTAAGAAACCGCAAGGGATGTTGTTGTATGTCAGTGCGCTGCACGTTAAGCACGACA 649 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 CAGTGTCGGGTGGTTACCAGGGAGATGTTGAGCCAATGTACGTGCGGGAGGCAATTATTC 709 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 ACGAGCAGTACAACACCACCACACGTGATCATGATATTGCGTTGCTGCGGCTAAACGGAA 769 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 GCGTTACGCAGGAAGGTAACTCACCCAGCCCGATCTGTATTCCGATGGGAAAGAAGCATG 829 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 ATCCAGTTGCTTCCGTTGGATACACACTTAGCTGTTTCGGTTGGGGTCTTAATGCTTACG 889 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 GAAAGCCCAATGACAGCAAGCAGTGGATGACACTGGAACGTATCTCGCTGGAACTGTGCC 949 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 AGGCAAGGATGGACTCGTTGAGAGTGGCCCTGGCCGGGAGGGCGATCATTTCGGAACGAA 1009 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 ATATCTGTACTATTACCATCACTGGGAATGACGCATTTTCGGGCTTTTCCGGGGGTCCGC 1069 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 TGATGTATCGGAAGGATGGCACCTGGTACTTGATTGGGTTGATTAATTATGGAGTCGGTG 1129 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 CCACGAGCAGTGAGTTCCCGGTAGTTTCCTTAAACGTTCAACAGTACACGGACTGGATCT 1189 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 TGGACAACATTCAACAACGGCACTGATGCTTCCAGCTGCTGTGATAGTATTATGTTTGTA 1249 consensus_8629#2 ------------------------------------------------------------ consensus_8629#1 ------------------------------------------------------------ consensus_8629#0 GTGCGACACACACACATAAACCTTCCCTTATCGT 1283 consensus_8629#2 ---------------------------------- consensus_8629#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||