cluster # 8647

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Anopheles gambiae
cluster # 8647 cluster # 8647 Sequences # 11 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8647#0 length = 1001 sequences # 4
consensus_8647#1 length = 941 sequences # 3
consensus_8647#2 length = 729 sequences # 1

consensus_8647#3 length = 673 sequences # 1
consensus_8647#4 length = 539 sequences # 1
consensus_8647#5 length = 415 sequences # 1

consensusID : consensus_8647#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1001
fasta sequence

                              [TTGCGGCCCTGTGCCAAGCAAAGGAGCCAACCAGCCTGCCTGTCTGTCTTCTTTGGGCTTCCTCGATACTTGATCGTTTATCTCGCGTGGCGCATCGTCTCGTGCGACCCGGTGAGATGATTTATTTTCAGTCCGATTCGTACGTCCATCGACAAGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGTGAAAATGTTGGATTAAACTCAAAGTCCGAGCAGAACAGTAATAGTTTCAGTACCGAAGCCAATGGGGATCAATTGAAGATTGTTCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACATTAACTAGAGAAGATCGGTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGTGTTTTCGTTTTCCCGGAAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATAGAGTACTAGCGAGAGAGAGAGAGAGAGAGAGACAGAGACAGATTGTATCGTTACCTCTGTTTGGTGTACTCTGTTCTTATTTCGGTGACACTTTTCTGTACAATTTCTAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACTAACCGGGGTATTTTTGACCCCCCCCCCCCTCCCATTCCCCCTTGCTAGAACCAAAGACAAATTAACCAAACAGAAAAGAACACAGAGAAACAACCATCCCACC]

[+] EMBL BX627675             [TTGCGGCCCTGTGCCAAGCAAAGGAGCCAACCAGCCTGCCTGTCTGTCTTCTTTGGGCTTCCTCGATACTTGATCGTTTATCTCGCGTGGCGCATCGTCTCGTGCGACCCGGTGAGATGATTTATTTTCAGTCCGATTCGTACGTCCATCGACAAGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM647204             [                                                                                                                                                  ccgCGACAAGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGTGAAAATGTTGGATTAAACTCAAAGTCCGAGCAGAACAGTAATAGTTTCAGTACCGAAGCCAATGGGGATCAATTGAAGATTGTTCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACATTAACTAGAGAAGATCGGTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGTGTTTTCGTTTTCCCGGAAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATAGAGTACTAGCGAGAGAGAGAGAGAGAGAGAGACAGAGACAGATTGTATCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM612871             [                                                                                                                                                                                     ccgCAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGTGAAAATGTTGGATTAAACTCAAAGTCCGAGCAGAACAGTAATAGTTTCAGTACCGAAGCCAATGGGGATCAATTGAAGATTGTTCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACATTAACTAGAGAAGATCGGTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGTGTTTTCGTTTTCCCGGAAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATAGAGTACTAGCGAGAGAGAGAGAGAGAGAGAGACAGAGACAGATTGTATCGTTACCTCTGTTTGGTGTACTCTGTTCTTATTTCGGTGACACTTTTCTGTACAATTTCTAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCACAG                                                                                                                                                           ]
[+] EMBL BM588384             [                                                                                                                                                                                                                                                                                                                                                            ccgGAAGATTGTTCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACATTAACTAGAGAAGATCGGTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGTGTTTTCGTTTTCCCGGAAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATAGAGTACTAGCGAGAGAGAGAGAGAGAGAGAGACAGAGACAGATTGTATCGTTACCTCTGTTTGGTGTACTCTGTTCTTATTTCGGTGACACTTTTCTGTACAATTTCTAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACTAACCGGGGTATTTTTGACCCCCCCCCCCCTCCCATTCCCCCTTGCTAGAACCAAAGACAAATTAACCAAACAGAAAAGAACACAGAGAAACAACCATCCCACC]




>consensus_8647#0
TTGCGGCCCTGTGCCAAGCAAAGGAGCCAACCAGCCTGCCTGTCTGTCTTCTTTGGGCTT
CCTCGATACTTGATCGTTTATCTCGCGTGGCGCATCGTCTCGTGCGACCCGGTGAGATGA
TTTATTTTCAGTCCGATTCGTACGTCCATCGACAAGGATCGCCGCGCCGGTTGATGCCGA
GGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTG
TGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGTGAAAATGTTGGATTAAACTCAAA
GTCCGAGCAGAACAGTAATAGTTTCAGTACCGAAGCCAATGGGGATCAATTGAAGATTGT
TCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACATTAACTAGAGAAGATCG
GTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGTGTTTTCGTTTTCCCGG
AAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATAGAGTACTAGCGAGAGAGAGAGA
GAGAGAGAGACAGAGACAGATTGTATCGTTACCTCTGTTTGGTGTACTCTGTTCTTATTT
CGGTGACACTTTTCTGTACAATTTCTAGGCACCCGTCTCGCACATTGTCCGCCGTCACGA
GGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCA
CGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAG
CGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAA
CCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACTAA
CCGGGGTATTTTTGACCCCCCCCCCCCTCCCATTCCCCCTTGCTAGAACCAAAGACAAAT
TAACCAAACAGAAAAGAACACAGAGAAACAACCATCCCACC

consensusID : consensus_8647#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 941
fasta sequence

                              [CTGCTATTAAGCAGCTCTATTGTGTAGTGATTTGATCAATCATCACTCTCCTCCATCCAAGGCGGCGGTGACGCTGCTCCTCCGTTGTACGTGAGTTGCTCATAGCGATCGTCACAGTCACGGTTGAGATTTGGCAGTAGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCACGGATGTACATGGGATTGGATCGTTCCAGGAGATTGCAAGCCCAGATAATACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGCCATCTACATAAGGAAGAAGAAGAAGAAAGCCACATCCAAAAACACACGCGGGAGGGGGAGGGGGAGAGAACAGCCACTCTCGGTTCCGTGTCAAGACCCTCATTGAGGACATCACACGCTGACAGCGGCTTTTTCAACGATGAGCCCTCAGGATCGGGCCGTAATCTGCGCACATCCTTTTGAACGTGTCACCAACTGATAATAAAACGTTAGAAACGGACTCTCTCACCCGCAGTACCCATTTTCTA]

[+] EMBL CNS096G8             [CTGCTATTAAGCAGCTCTATTGTGTAGTGATTTGATCAATCATCACTCTCCTCCATCCAAGGCGGCGGTGACGCTGCTCCTCCGTTGTACGTGAGTTGCTCATAGCGATCGTCACAGTCACGGTTGAGATTTGGCAGTAGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCACGGATGTACATGGGATTGGATCGTTCCAGGAGATTGCAAGCCCAGATAATACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCAAGTGTCACGGTTCACCGCATTTCCGAGCGAAACATTGAACGTGGCAGAACGCAGCTGACCGAA GTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGCCATCTACATAAGGAAGAAGAAGAAGAAAGCCACATCCAAAAACACACGCGGGAGGGGGAGGGGGAGAGAACAGCCACTCTCGGTTCCGTGTCAAGACCCTCATTGAGGACATCACACGCTGACAGCGGCTTTTTCAACGATGAGCCCTCAGGATCGGGCCGTAATCTGCGCACATCCTTTTGAACGTGTCACCAACTGATAATAAAACGTTAGAAACGGACTCTCTCACCCGCAGTACCCATTTTCTA]
[+] EMBL BM606028             [                                                                                                                            ccgGATTTGGCAGTAGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCACGGATGTACATGGGATTGGATCGTTCCAGGAGATTGCAAGCCCAGATAATACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGCCATCTACATAAGGAAGAAGAAGAAGAAAGCCACATCCAAAAACACACGCGGGAGGGGGAGGGGGAGAGAACAGCCACTCTCGGTTC                                                                                                                                                                  ]
[+] EMBL BX623086             [                                                                                                                                          AGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCACGGATGTACATGGGATTGGATCGTTCCAGGAGATTGCAAGCCCAGATAATACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGCCATCTACATAAGGAAGAAGAAGAAGAAAGCCACATCCAAAAAC                                                                                                                                                                                                             ]




>consensus_8647#1
CTGCTATTAAGCAGCTCTATTGTGTAGTGATTTGATCAATCATCACTCTCCTCCATCCAA
GGCGGCGGTGACGCTGCTCCTCCGTTGTACGTGAGTTGCTCATAGCGATCGTCACAGTCA
CGGTTGAGATTTGGCAGTAGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCAC
GGATGTACATGGGATTGGATCGTTCCAGGAGATTGCAAGCCCAGATAATACCGACCGATA
ACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAA
GTAACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCA
CGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTA
CTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATA
CGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATT
CGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCC
AACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGG
GGAGAAGCAATTGGCAACTTTCAAATAAACAGCCATCTACATAAGGAAGAAGAAGAAGAA
AGCCACATCCAAAAACACACGCGGGAGGGGGAGGGGGAGAGAACAGCCACTCTCGGTTCC
GTGTCAAGACCCTCATTGAGGACATCACACGCTGACAGCGGCTTTTTCAACGATGAGCCC
TCAGGATCGGGCCGTAATCTGCGCACATCCTTTTGAACGTGTCACCAACTGATAATAAAA
CGTTAGAAACGGACTCTCTCACCCGCAGTACCCATTTTCTA

consensusID : consensus_8647#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 729
fasta sequence

                              [GCAGAATCCCCCGAGGTTAATGTACATGGGTTTGGATCGTCNNCAGGAGATTGCAAGCCCAGCATAAAACCGACGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGCAATTAAGTCATGGGGAAGTAACTATGGCCGGGTATGAACGCGACAGGAAGCTGCTCTAACACGGTACCGGTCGCGNAGTGTCACGGGTTCACCGCACTTTCTCGAGGTGAAACATTGANACGGTGGCAGAACGCTAGCTGATCCGATAGGGTACTCCCAGTACTATTTGTGCGAAGCTTAGTCATAGTATGTTGCAGNAGAGAAAAACATGCGCTTCCCGGCATTTCTACGCACCGAGTTCCTCTCGNCCTCNGCCGCGACCAATTACCGNACAATAGGAANGTGTGTGCGATAAACACATCGTCCTTACACTACTGATACGGGTTTGANTACGTCAGCAGTNGTTAATCCGNAGGTNGTTGGCANCTGAGCAATAGTTCCGGTTAACGACAGNGGTGCCAAATCGTATCGCACTTTGTTCCCGGTGCGCTTGCCGGCTAAGGTACGGCCCCGGACGGGCCAACTCCGGCTCCNCGCTCAACGAGCGNGTGGGTGTGCTCGGGCAAAACGCTTTGTCAACGAACCGTNATGCAAGTTTCTTNGCGCCGTGGNGGGTAAATCCCGNACTGTAGCNTGGGANTTTNCTGGTTNGTGTAAACCCGTTCGT]

[+] EMBL AL933505             [GCAGAATCCCCCGAGGTTAATGTACATGGGTTTGGATCGTCNNCAGGAGATTGCAAGCCCAGCATAAAACCGACGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGCAATTAAGTCATGGGGAAGTAACTATGGCCGGGTATGAACGCGACAGGAAGCTGCTCTAACACGGTACCGGTCGCGNAGTGTCACGGGTTCACCGCACTTTCTCGAGGTGAAACATTGANACGGTGGCAGAACGCTAGCTGATCCGATAGGGTACTCCCAGTACTATTTGTGCGAAGCTTAGTCATAGTATGTTGCAGNAGAGAAAAACATGCGCTTCCCGGCATTTCTACGCACCGAGTTCCTCTCGNCCTCNGCCGCGACCAATTACCGNACAATAGGAANGTGTGTGCGATAAACACATCGTCCTTACACTACTGATACGGGTTTGANTACGTCAGCAGTNGTTAATCCGNAGGTNGTTGGCANCTGAGCAATAGTTCCGGTTAACGACAGNGGTGCCAAATCGTATCGCACTTTGTTCCCGGTGCGCTTGCCGGCTAAGGTACGGCCCCGGACGGGCCAACTCCGGCTCCNCGCTCAACGAGCGNGTGGGTGTGCTCGGGCAAAACGCTTTGTCAACGAACCGTNATGCAAGTTTCTTNGCGCCGTGGNGGGTAAATCCCGNACTGTAGCNTGGGANTTTNCTGGTTNGTGTAAACCCGTTCGT]




>consensus_8647#2
GCAGAATCCCCCGAGGTTAATGTACATGGGTTTGGATCGTCNNCAGGAGATTGCAAGCCC
AGCATAAAACCGACGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAA
GCAATTAAGTCATGGGGAAGTAACTATGGCCGGGTATGAACGCGACAGGAAGCTGCTCTA
ACACGGTACCGGTCGCGNAGTGTCACGGGTTCACCGCACTTTCTCGAGGTGAAACATTGA
NACGGTGGCAGAACGCTAGCTGATCCGATAGGGTACTCCCAGTACTATTTGTGCGAAGCT
TAGTCATAGTATGTTGCAGNAGAGAAAAACATGCGCTTCCCGGCATTTCTACGCACCGAG
TTCCTCTCGNCCTCNGCCGCGACCAATTACCGNACAATAGGAANGTGTGTGCGATAAACA
CATCGTCCTTACACTACTGATACGGGTTTGANTACGTCAGCAGTNGTTAATCCGNAGGTN
GTTGGCANCTGAGCAATAGTTCCGGTTAACGACAGNGGTGCCAAATCGTATCGCACTTTG
TTCCCGGTGCGCTTGCCGGCTAAGGTACGGCCCCGGACGGGCCAACTCCGGCTCCNCGCT
CAACGAGCGNGTGGGTGTGCTCGGGCAAAACGCTTTGTCAACGAACCGTNATGCAAGTTT
CTTNGCGCCGTGGNGGGTAAATCCCGNACTGTAGCNTGGGANTTTNCTGGTTNGTGTAAA
CCCGTTCGT

consensusID : consensus_8647#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CCGATTGGAGCACGGATGTACATGGGTTTGGATCGTTCCAAGAGATTGCAAGCCCAGATAAAACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAAGTTGGCCAGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAATAGCAATTGTGCAAAAAACAACGTTTCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGGAAAACGCTAAAGAACGTTAAAAAATCAGTGAAATCTAAGAACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATCGGCAACTTTCAAATAAACAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGTGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACC]

[+] EMBL BM595062             [CCGATTGGAGCACGGATGTACATGGGTTTGGATCGTTCCAAGAGATTGCAAGCCCAGATAAAACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATTAAGTCATGGGGAAGTAAGTTGGCCAGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAATAGCAATTGTGCAAAAAACAACGTTTCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGGAAAACGCTAAAGAACGTTAAAAAATCAGTGAAATCTAAGAACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATCGGCAACTTTCAAATAAACAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGTGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACC]




>consensus_8647#3
CCGATTGGAGCACGGATGTACATGGGTTTGGATCGTTCCAAGAGATTGCAAGCCCAGATA
AAACCGACCGATAACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGAATT
AAGTCATGGGGAAGTAAGTTGGCCAGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACC
GTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAG
CTGACCGAAGGTACTCCATATATTTGTGCAATAGCAATTGTGCAAAAAACAACGTTTCGG
ATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGGAAAACGCTAAAGAACGTT
AAAAAATCAGTGAAATCTAAGAACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAA
ATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCC
CAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATCGGCAACTTTCAAATAAACA
GGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGT
TTCGTGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTC
TTCCACCGGCACC

consensusID : consensus_8647#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 539
fasta sequence

                              [ACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGGTACCCATTTTCTACCATCTGTTACACATTCTGTGACACACCGTTTTGTCTGTCCTTGCGAACGACTATGGGCTGGATCGTTCAGTACCAGGGGTATGACATGGCCTACCCATCGCGGACAGGCGAGTATGGTGCGCTACAAGCTACCAG]

[+] EMBL BX617610             [ACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGGTTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTCCATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGCTCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAACACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGAGAAGCAATTGGCAACTTTCAAATAAACAGGTACCCATTTTCTACCATCTGTTACACATTCTGTGACACACCGTTTTGTCTGTCCTTGCGAACGACTATGGGCTGGATCGTTCAGTACCAGGGGTATGACATGGCCTACCCATCGCGGACAGGCGAGTATGGTGCGCTACAAGCTACCAG]




>consensus_8647#4
ACTTGGCCGGGTATGAACGCGAAGGAAGCAGCTCTAAACGTACCGTCGCGAGTGTCACGG
TTCACCGCATTTCCGAGTGAAACATTGAACGTGGCAGAACGCAGCTGACCGAAGGTACTC
CATATATTTGTGCAAAAACAACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGA
AAAGAAGGGGAAAAACGCTAAAGAACGTTAAAATACAGTGAAATCTAAGCACACATTCGC
TCGAAGCGGACGCTAAGGTTGAATTAAAATTCCGGACCAGTGTTTTAGTTTACCCCCAAC
ACCATTCCAATGTGTTATGGAGCCATCCCAACGCTAGACCAGGAGGGTTACCTTCGGGGA
GAAGCAATTGGCAACTTTCAAATAAACAGGTACCCATTTTCTACCATCTGTTACACATTC
TGTGACACACCGTTTTGTCTGTCCTTGCGAACGACTATGGGCTGGATCGTTCAGTACCAG
GGGTATGACATGGCCTACCCATCGCGGACAGGCGAGTATGGTGCGCTACAAGCTACCAG

consensusID : consensus_8647#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 415
fasta sequence

                              [CAGATCGCCACGAGGTTNAGACAAGGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACT]

[+] EMBL BX466577             [CAGATCGCCACGAGGTTNAGACAAGGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGGAGGAAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACT]




>consensus_8647#5
CAGATCGCCACGAGGTTNAGACAAGGGATCGCCGCGCCGGTTGATGCCGAGGAACAGAGA
GTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAATCTTGTATTGTGAGGCGCTG
CGTGTGTTTAGTGCGTTGGAGGAAGGCACCCGTCTCGCACATTGTCCGCCGTCACGAGGT
CAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCCGGTACCGGACAATACACCGTCCACGG
TAACGACGCCCGTTAACGGTTCTCTTCCACCGGCACCGGACACCCGACCGCCGGCAGCGA
ACCAACGTAACTGATCACTACTTGTCACTTGATTCGTTACGGTGGGGGCAGATCGAACCA
CAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGCGGTGACCATCTAGACCGGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8647#1      CTGCTATTAAGCAGCTCTATTGTGTAGTGATTTGATCAATCATCACTCTCCTCCATCCAA 60
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      ------------------------------------------------------------
consensus_8647#2      ------------------------------------------------------------
consensus_8647#0      ---------------TTGCGGCCCTGTGCCAAGCAAAGGAGCCAACCAGCCTGCCTGTCT 45
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      GGCGGCGGTGACGCTGCTCCTCCGTTGTACGTGAGTTGCTCATAGCGATCGTCACAGTCA 120
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      ------------------------------------------------------------
consensus_8647#2      ------------------------------------------------------------
consensus_8647#0      GTCTTCTTTGGGCTTCCTCGATACTTGATCGTTTATCTCGCGTGGCGCATCGTCTCGTGC 105
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      CGGTTGAGATTTGGCAGTAGAAAAACACGTCCATTACGTTGGCCCGTCTCATTGGAGCAC 180
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      -----------------------------------------------CCGATTGGAGCAC 13
consensus_8647#2      ------------------------------------------GCAGAATCCCCCGAG-GT 17
consensus_8647#0      GACCCGGTGAGATGATTTATTTTCAGTCCGATTCGTACGTCCATCGACAAGGATCGCCGC 165
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      GGATGTACATGGGATTGGATCGT-TCCAGGAGATTGCAAGCCCAGATAATACCGACCGAT 239
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      GGATGTACATGGGTTTGGATCGT-TCCAAGAGATTGCAAGCCCAGATAAAACCGACCGAT 72
consensus_8647#2      TAATGTACATGGGTTTGGATCGTCNNCAGGAGATTGCAAGCCCAGCATAAAACCGACGAT 77
consensus_8647#0      GCCGGTTGATGCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGAC 225
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      AACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAG-AATTAAGTCATGGGG 298
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      AACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAG-AATTAAGTCATGGGG 131
consensus_8647#2      AACGCCTTCACATTCCACGAAGAAGAAGGAGGCCCCACGATAAGCAATTAAGTCATGGGG 137
consensus_8647#0      ATCAATCTTGTATTGTGAGGCGCTGCGTGTGTTTAGTGCGTTGG-AGGAAGGTGAAAATG 284
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      AAGTAACT-TGGCCGGGTATGAACGCGA-AGGAAGCAGCTCTAA-ACG-TACCG-TCGCG 353
consensus_8647#4      -----ACT-TGGCCGGGTATGAACGCGA-AGGAAGCAGCTCTAA-ACG-TACCG-TCGCG 50
consensus_8647#3      AAGTAAGT-TGGCCAGGTATGAACGCGA-AGGAAGCAGCTCTAA-ACG-TACCG-TCGCG 186
consensus_8647#2      AAGTAACTATGGCCGGGTATGAACGCGACAGGAAGCTGCTCTAACACGGTACCGGTCGCG 197
consensus_8647#0      TTGGATTAAACTCAAAGTCCGAGCAGAACAGTAATAGTTTCAGTACCGAAGCCAATGGGG 344
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      A-GTGTCACGG-TTCACCGCATTTCC---GAGTGAA-ACATTGAAC--GTGGCAGAACGC 405
consensus_8647#4      A-GTGTCACGG-TTCACCGCATTTCC---GAGTGAA-ACATTGAAC--GTGGCAGAACGC 102
consensus_8647#3      A-GTGTCACGG-TTCACCGCATTTCC---GAGTGAA-ACATTGAAC--GTGGCAGAACGC 238
consensus_8647#2      NAGTGTCACGGGTTCACCGCACTTTCTCGAGGTGAA-ACATTGANACGGTGGCAGAACGC 256
consensus_8647#0      ATCAATTGAAGATTGTTCTTATTATCGGAAAGTGTGTGCTTTGTGAGCATGTGTTTACAT 404
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      -AGCTGACCGAA---GGTACTCC--ATA-TATTTGTGCAA---------------AAACA 443
consensus_8647#4      -AGCTGACCGAA---GGTACTCC--ATA-TATTTGTGCAA---------------AAACA 140
consensus_8647#3      -AGCTGACCGAA---GGTACTCC--ATA-TATTTGTGCAATAGCAATTGTGCAAAAAACA 291
consensus_8647#2      TAGCTGATCCGATAGGGTACTCCCAGTACTATTTGTGCGAAGCTTAGTC------ATAGT 310
consensus_8647#0      TAACTAGAGAAGATCGGTAACCAAGGCCTACCTTGTGTTGGAGGCTTTCTTGACTTAAGT 464
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      ACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTA 503
consensus_8647#4      ACGTTCCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGAAAAACGCTA 200
consensus_8647#3      ACGTTTCGGATTTCGACATTCTTCGCTCGCGGACATACGAAAAGAAGGGGGAAAACGCTA 351
consensus_8647#2      ATGTTGCAGNAGAGAAAAACATGCGCTTCCCGGCATTTCTACGCACCGAGTTCCTCTCGN 370
consensus_8647#0      GTTTTCGTTTTCCCGGAAAGTCTCCCTTCGCAGTGGCAGTGAGGGAGAACGATA--GAGT 522
consensus_8647#5      ------------------CAGATCGCCACGAGGTTNAGACAAGGGATCGCCGCGCCGGTT 42
                                             * *                                  

consensus_8647#1      AAG-AACGTTAAAATA-CAGTGAAATCT-AAGCACACATTCGCTCGAAGCGGACGCTAAG 560
consensus_8647#4      AAG-AACGTTAAAATA-CAGTGAAATCT-AAGCACACATTCGCTCGAAGCGGACGCTAAG 257
consensus_8647#3      AAG-AACGTTAAAAAATCAGTGAAATCT-AAGAACACATTCGCTCGAAGCGGACGCTAAG 409
consensus_8647#2      CCTCNGCCGCGACCAATTACCGNACAAT-AGGAANGTGTGTGCGATAAACACA------- 422
consensus_8647#0      ACT-AGCGAGAGAGAGAGAGAGAGAGAG---ACAGAGACAGATTGTATCGTTACCTCTGT 578
consensus_8647#5      GAT-GCCGAGGAACAGAGAGTGGCGTAGCACGCAGGCATCAGTTTAGCAGCGACATCAAT 101
                            *           *  *           *                  *       

consensus_8647#1      GT--TGAATTAAAATTCCGGACCAGTG---TTTTAGTTTACCCCC----AACACCATTCC 611
consensus_8647#4      GT--TGAATTAAAATTCCGGACCAGTG---TTTTAGTTTACCCCC----AACACCATTCC 308
consensus_8647#3      GT--TGAATTAAAATTCCGGACCAGTG---TTTTAGTTTACCCCC----AACACCATTCC 460
consensus_8647#2      -T--CGTCCTTACACTACTGATACGGG---TTTGANTACGTCAGC----AGTNGTTAATC 472
consensus_8647#0      TTGGTGTACTCTGTTCTTATTTCGGTGACACTTTTCTGTACAATTTCTAGGCACCCGTCT 638
consensus_8647#5      CT--TGTATTGTGAGGCGCTGCGTGTG----TTTAGTGCGTTGGAGGAAGGCACCCGTCT 155
                       *   *   *              * *    **   *                       

consensus_8647#1      AATGTGTTATGGAGCCATCCCAACGCTAGACC------AGGAGGGTTACCTTCGGG---G 662
consensus_8647#4      AATGTGTTATGGAGCCATCCCAACGCTAGACC------AGGAGGGTTACCTTCGGG---G 359
consensus_8647#3      AATGTGTTATGGAGCCATCCCAACGCTAGACC------AGGAGGGTTACCTTCGGG---G 511
consensus_8647#2      CGNAGGTNGTTGG--CANCTGAGCAATAGTTC------CGGTTAACGACAGNGGTG---C 521
consensus_8647#0      CGCACATTGTCCG-CCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCC 697
consensus_8647#5      CGCACATTGTCCG-CCGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTTTCGCGTGCC 214
                            *  *     *  *        **  *       **            * *    

consensus_8647#1      AGAAGCAATTGGCAACTTTCAAATAAACA-GCCATCTACATAAGGAAGAAGAAGAAGAAA 721
consensus_8647#4      AGAAGCAATTGGCAACTTTCAAATAAACA-GGTACCCATTTTCTACCATCTGTTA----- 413
consensus_8647#3      AGAAGCAATCGGCAACTTTCAAATAAACA-GGCACCCGTCTCGCACATTGTCCGC----- 565
consensus_8647#2      CAAATCGTATCGCACTTTGTTCCCGGTGC-GCTTGCCGGCTAAGGTACGGCCCCGGACGG 580
consensus_8647#0      GGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGC 757
consensus_8647#5      GGTACCGGACAATACACCGTCCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGC 274
                         * *       *                *    *                        

consensus_8647#1      GCC--ACATCCAAAAACACACGCGGGAGGGGGAGGGGGAGAGAACAGCCACTCTCGGTTC 779
consensus_8647#4      --C--ACATTCTGTGACACACC--GTTTTGTCTGTCCTTGCGAACGACTATGGGCTGGAT 467
consensus_8647#3      ------CGTCACGAGGTCAGTCCTGCCCCAGGTGCGCCTGTT-----TCGTGTGCCGGTA 614
consensus_8647#2      GCC--AACTCCGGCTCCNCGCTC-AACGAGCGNGTGGGTGTGCTCGGGCAAAA--CGCTT 635
consensus_8647#0      ACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATT 817
consensus_8647#5      ACCGGACACCCGACCGCCGGCAGCGAACCAACGTAACTGATCACTACTTGTCACTTGATT 334
                                                                              *   

consensus_8647#1      CGTGTCAAGACCCTCAT-TGAGGACATCACACGCTGACAGCGGCTTTTTCAACGATGAGC 838
consensus_8647#4      CGT-TCAGTACCAGGGG-T-ATGACATGGCCTACCCATCGCGGACAGGCGAGTATGGTGC 524
consensus_8647#3      CCGGACAATAC-ACCGT-CCACGGTAACGACGCCCGTTAACGGTTCTCTTCCACCGGCAC 672
consensus_8647#2      TGTCAACGAACCGTNAT-GCAAGTTTCTTNGCGCCGTGGNGGGTAAATCCCGNACTGTAG 694
consensus_8647#0      CGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGC 877
consensus_8647#5      CGTTACGGTGGGGGCAGATCGAACCACAGTCCGTCCAAAAGGGGTTGCTGCTTATCACGC 394
                                                               **                 

consensus_8647#1      CCTCAGGATCGGG-CCGTAATCTGCGCACATCCTTTTGAACGTGTCACCAACTGATAATA 897
consensus_8647#4      GCT-ACAAGCTAC-CAG------------------------------------------- 539
consensus_8647#3      C----------------------------------------------------------- 673
consensus_8647#2      CNTGGGANTTTNC-TGGTTNGTGTAAACCCGTTCGT------------------------ 729
consensus_8647#0      GGTGACCATCTAGACCGGACTAACCGGGGTATTTTTGACCCCCCCCCCCCTCCCATTCCC 937
consensus_8647#5      GGTGACCATCTAGACCGGACT--------------------------------------- 415
                                                                                  

consensus_8647#1      AAACGTTAGAAACGGACTCTCTCACCCGCAGTACCCATTTTCTA---------------- 941
consensus_8647#4      ------------------------------------------------------------
consensus_8647#3      ------------------------------------------------------------
consensus_8647#2      ------------------------------------------------------------
consensus_8647#0      CCTTGCTAGAACCAAAGACAAATTAACCAAACAGAAAAGAACACAGAGAAACAACCATCC 997
consensus_8647#5      ------------------------------------------------------------
                                                                                  

consensus_8647#1      ----
consensus_8647#4      ----
consensus_8647#3      ----
consensus_8647#2      ----
consensus_8647#0      CACC 1001
consensus_8647#5      ----