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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8656#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 716 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT-TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG-CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTGAGTGAAAGTCTTT]
[+] EMBL BM648027 [CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGA ]
[+] EMBL BM631507 [ ccgGCAAATCTTCGCACTGCGGATTCAACCGAAAAGCAGTACAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGGTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCG ]
[+] EMBL BM611050 [ ccgCAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACGTTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTG ]
[+] EMBL BM613249 [ ccgAACCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAGTTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTTGCTTATAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTGTGTGTTTTTTTTGGGAGCGCAGTTTGTTTTTCCCCCCCATCCCGTAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTGAGTGAAAGTCTTT]
[+] EMBL BM577152 [ ccgCCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGT TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTA ]
[+] EMBL BM632521 [ ccgCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAGGGGGGGAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCG TTTTTTTTTTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAGCCCGTCGGTCCTT ]
[+] EMBL BM632032 [ ccGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAGTTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTTGCTTATAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTGTGTGTTTTTTTTGGGAGCGCAGTTTGTTTTTCCCCCCCATCCCGTAGTGCGAGTGCGAGGTGACGCGGTGGAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAAGCCCTGCGCCATTACGTTGTAAACAAAG CCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGTGTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAG ]
[+] EMBL AGA281735 [ GATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCATTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTG TGTCTTTTTTGGGAGCGTAGTTTGTTTTTT CCCCCATCCCGGAGTGCGAGTGCGgg ]
[-] EMBL AGA280049 [ GAACCCAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAATGCGCATCAGTAGAGTGTTGTTCGTTTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCATTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGTG TGTCTTTTTTGGGAGCGTAGTTTGTTTTTT CCCCCATCCCGGAGTGCGAGTGCGGGGTG GG GGAAAAaaaa ]
consensusID : consensus_8656#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[AATCCCCCGAGGTTTAAAAGCNGTAAGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGTAGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCCGGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTAAGTCACACANAAAANGTCCGTGGTGGT]
[+] EMBL AL932540 [AATCCCCCGAGGTTTAAAAGCNGTAAGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGTGCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTGCCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGTAGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCCGGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTAAGTCACACANAAAANGTCCGTGGTGGT]
consensusID : consensus_8656#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 434 fasta sequence
[CCGCCCACGCGTCCGCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTTTTGGGAGC]
[+] EMBL BM620890 [CCGCCCACGCGTCCGCGAAAAGCAGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTGATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTGAATGATTTAAAACGATTGTTGTGCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGACCCAAAACGTTCTTGGAAATTGGAGTGGAGCTCTGTCAGCGTGTGTAGGTTGAAGAGTAGCTTTTAAAAACGCACACATTTAATGCGCATCAGTAGAGTGTTGTTCGATTTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACATTGCCGTTGCGTTTCCGAGAACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTTTTGGGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8656#0 CCGCCCACGCGTCCGCCCACGCGTCCGCAAATCTTCGCACTGCGGATTCAACCGAAAAGC 60
consensus_8656#2 ----------------------------------CCGC-CCACGCGTCCG--CGAAAAGC 23
consensus_8656#1 -----------------------------------AATCCCCCGAGGTTT----AAAAGC 21
* ** ******
consensus_8656#0 AGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 120
consensus_8656#2 AGTAGAGAGGGCGTTTGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 83
consensus_8656#1 NGTA-AGAGGGCGTCCGTTGACCAGATGAGCAAAGATTCGCTTCTTGGACGTGCCGTTTG 80
*** ********* ********************************************
consensus_8656#0 ATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTG-AATGATTTAAAACGATTGTTGT 179
consensus_8656#2 ATAGTGAACACAAAATCGCAAGCCAATTCGTGTGGTG-AATGATTTAAAACGATTGTTGT 142
consensus_8656#1 ATAGTGAACCCAAAATCGCAAGCCAATTCGTGTGGTGCAATGATTTAAAACGATTGTTGT 140
********* *************************** **********************
consensus_8656#0 GCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 239
consensus_8656#2 GCGATAAATCACGTAAACATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 202
consensus_8656#1 GCGATAAATCACATAAATATTTGCTGATAAAAAACGATACAAGCGTCGGTTGCTGAAGAC 200
************ **** ******************************************
consensus_8656#0 CCAAAACGTTCTTGGAAAT-TGGAGTGGAGCT-CTGTCAGCGTGTGTAGGTTGAAGAGTA 297
consensus_8656#2 CCAAAACGTTCTTGGAAAT-TGGAGTGGAGCT-CTGTCAGCGTGTGTAGGTTGAAGAGTA 260
consensus_8656#1 CCAAAACGATATTGGAAATCTGGAGTGGAGCTACTGTCAGCGTGTGTAGGTTGAAGAGTG 260
******** * ******** ************ **************************
consensus_8656#0 GCTTTTAAAAACGCACACATTTAA--TGC--GCATCAGTAG--AGTGTTGTT--CGAT-- 347
consensus_8656#2 GCTTTTAAAAACGCACACATTTAA--TGC--GCATCAGTAG--AGTGTTGTT--CGAT-- 310
consensus_8656#1 CCTTTAAAAAACGTACACATTTAAACTGCAGGCATCAGTAAGAAGTGTNGGTATCGGTGT 320
**** ******* ********** *** ********* ***** * * ** *
consensus_8656#0 --TTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACA-TTGCCGTTG-CGTTTCCGAG 403
consensus_8656#2 --TTTACCCTCTCGTGAGATAGTGTGCCAGCTGTTTACA-TTGCCGTTG-CGTTTCCGAG 366
consensus_8656#1 AGTTAAGCACCTCCTCNGTGAGCATANGTGTGGCCCAGAACTGGTGTTAACAATTTGGCC 380
** * * *** * * ** * * * * * ** *** * ** *
consensus_8656#0 AACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTT 463
consensus_8656#2 AACGTCCCGTTTCCGATTGCACGCATTAATCACACCACACTTCCGTGTGCGTTTTTTTTT 426
consensus_8656#1 GGTNTGGCGGTTTNCNCCGGAGGAAACGGTTGCCACTTTTTCCGATATGCGACGGCCTTA 440
* ** ** * * * * * * * * * * **** **
consensus_8656#0 TTGGGAGCGCAGTTTGTTTTTTCCCCCCATCCCGGAGTGCGAGTGCGAGGTGACGCGGTG 523
consensus_8656#2 TTGGGAGC---------------------------------------------------- 434
consensus_8656#1 AGTCACACANAAAANGTCCGTGGTGGT--------------------------------- 467
*
consensus_8656#0 GAAAATTTGGATCCGGAGCGCCGAGCTGTGTGTATTGGATTCCCGCTGGCTGACGAAAAA 583
consensus_8656#2 ------------------------------------------------------------
consensus_8656#1 ------------------------------------------------------------
consensus_8656#0 GCCCTGCGCCATTACGTTGTAAACAAAGCCGTCGGTCGTTCGGTGTGTGCGTGTGTGTGT 643
consensus_8656#2 ------------------------------------------------------------
consensus_8656#1 ------------------------------------------------------------
consensus_8656#0 GTGTGTGCAGTGCGGTTACACGAAAGGTGCGTCTCTTGGAGGGTGCAGTGCGCGTGTGTG 703
consensus_8656#2 ------------------------------------------------------------
consensus_8656#1 ------------------------------------------------------------
consensus_8656#0 AGTGAAAGTCTTT 716
consensus_8656#2 -------------
consensus_8656#1 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||