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Anopheles gambiae
cluster # 8659 cluster # 8659       Sequences # 11       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8659#0 length = 922 sequences # 5  
consensus_8659#1 length = 920 sequences # 1  
consensus_8659#2 length = 674 sequences # 3  
consensus_8659#3 length = 672 sequences # 1  
consensus_8659#4 length = 401 sequences # 1  

consensusID : consensus_8659#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 922
fasta sequence
                              [TGGTTTAACTTTTATTTATCACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTCTATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCACGAAAG-TTCTGCAGTTTGTCTCGCACTTGCACGGGGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCTTGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTTTAAATTCGTCAACAGGTACTTCAACGCTTTGGTCCACTGTTCTTCCGAGTTGAATTGGATCTTGATCGAAAAACTGCTTCCGGTCGATGCATCTTCGATTTTTCCTTTCTCCATTAGGTAAGGCAGGCAAAAGTCGGGATCTCGGCGGACAATTTCTTCTTTGAACTGCTGCAAACAGTCGAGGAATGCAACCATCGCAGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAG-CGGTAGCTCTTTCCCTTCGCCCAGGACCTCTATGTAAGAATGATTGCCGTACGGTACCAGGCGATACTGTTTGAAGGTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGACCCCAGGCCGCGTTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGACGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGGAACGGAACTCGTCCTCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCAGTATTTGTTCTCCTCGCGTTCGAGCCGCTGCTTTTCCTTTTTCCTGCTCCTCGACCGCTTGCCGGATGGATTGCTCTTCGCGAGAAAGGC]

[+] EMBL CNS09QI8             [TGGTTTAACTTTTATTTATCACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTCTATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCACGAAAGATTCTGCAGTTTGTCTCGCACCTGCACGGGGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCTTGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTTTAAATTCGTCAGCAGGTACTTCAACGCTTTGGTCCACTGTTCTTCCGAGTTGAATTGGATCTTGATCGAAAAACTGCTTCCGGTCGATGCATCTTCGATTTTTCCTTTCTCCATTAGGTAAGGCAGGCAAAAGTCGGGATCTCGGCGGACAATTTCTTCTTTGAACTGCTGCAAACAGTCGAGGAATGCAACCATCGCAGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAGCCGGTAG TCTTTCCCTTCGCCCAGGACCTCTATGTAAGAATGATTGCCGTACGGTACCAGGCGATACTGTTTGAAGGTGAAATTCATTTTGTGTGCCAAGGCCGATAGCAGCAGACACGTCTGACCCCAGGCCGCGTTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGACGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGGAACGGAACTCGTCCTCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCAGTTTTTGTTCTCCTCGCGTTCGAGCCGCTGCTTTTCCTTTTTCCTGCTCCTCGACCGCTTGCCGGATGGATTGCTCTTCGCGAGAAAGGC]
[+] EMBL CNS09I13             [                TATCACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTCTATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCACGAAAG TTCTGCAGTTTGCCTCGCACTTGCACGGGGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCTTGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTTTAAATTCGTCAACAGGTACTTCAACGCTTTGGTCCACTGTTCTTCCGAGTTGAATTGGATCTTGATCGAAAAACTGCTTCCGGTCGATGCATCTTCGATTTTTCCTTTCTCCATTAGGTAAGGAAGGCAAAAGTCGGGATCTCGGCGGACAATTTCTTCTTTGAACTGCTGCAAACAGTCGAGGAATGCAACCATCGCAGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAG CGGTAGCTCTTTCCCTTCGCCCAGGACCTCTATGTAAGAATGATTGCCGTACGGTACCAGGCGATACTGTTTGAAGTTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGACCCCAGGCCGCGTTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAAAAGTGGAAGGTTGCATTGAAGACGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGGAACGGAACTCGTCCTCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCAATATTTGTTCTCCTCGCGTTCGAGCCGCTGCT                                                          ]
[-] EMBL BX625481             [                    ACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTCTATCTATACACGACGAGGACTATCGCCAACGAAGTAATATCACGAAAG TTCTGCAGTTTGCCTCGCACTTGCAC GAGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCTTGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTTTAAGTTCGTCAACAGGTACTTCAACGCTTTGGTCCACTGCTCTTCCGAGTTGAATTGGATCTTGATCGAAAAACTGCTTCCCGTCGATGCATCTTCGATTTTTCCTTTTTCCATTAGGTAAGGCAGGCAAAAGTCGGGATCTCGGCGAACAATTTCTTCCTTGAACTGCTGCAAACAGTCGAGGAATGCAACCATCGCCGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAG CGGTAGCTCTTTCCCTTCGCCCAGGACCTCTATGTAGGAATGGTTGCCGTACGGTACCAGGCGATACTGTTTGAAGCTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGACCCCAGGCCGCATTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGACGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCG                                                                                                                                                        ]
[-] EMBL BM592448             [                    ACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTCTATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCATGAAAG TTCTGCAGTTTGTCTCGCACTTGCACGGGGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCTTGTCCTCGGTGAACTGAGACGATACCCACGTGcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BX622063             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AG CGGTAGCTCTTTCCCTTCGCCCAGGACNTCTATGTAGGAATGATTGCCGTACGGTACCAGGCGATACTGTTTGAAGGTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGACCCCAGGCCGCATTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGACGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGGAACGGAACTCGTCCTCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCAGTATTTGTTCTCCTCtc                                                                         ]


>consensus_8659#0 TGGTTTAACTTTTATTTATCACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTA TTTTGTTCTATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCACGAAAGTTCT GCAGTTTGTCTCGCACTTGCACGGGGGCAAAGGGAAGGTATTTTGAGTTCTACCGCTGCT TGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTTTAAATTCGTCAACAGGT ACTTCAACGCTTTGGTCCACTGTTCTTCCGAGTTGAATTGGATCTTGATCGAAAAACTGC TTCCGGTCGATGCATCTTCGATTTTTCCTTTCTCCATTAGGTAAGGCAGGCAAAAGTCGG GATCTCGGCGGACAATTTCTTCTTTGAACTGCTGCAAACAGTCGAGGAATGCAACCATCG CAGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAGCGGTAGCT CTTTCCCTTCGCCCAGGACCTCTATGTAAGAATGATTGCCGTACGGTACCAGGCGATACT GTTTGAAGGTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGACCCC AGGCCGCGTTTATCTCCGACCAGTCGACCGGAGCCGATGGTAGCCGCCCGAGGCGGAAGT TGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGACGTTTG TTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGGAACGGA ACTCGTCCTCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCAGTATTTGT TCTCCTCGCGTTCGAGCCGCTGCTTTTCCTTTTTCCTGCTCCTCGACCGCTTGCCGGATG GATTGCTCTTCGCGAGAAAGGC



consensusID : consensus_8659#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 920
fasta sequence
                              [CANGAATCGCCCCGAGGTTTATCTGGAGGTTGACCTCGAATCGCAATCTGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCAAAACAAGGAGTCTGCTCGGCCACAGCTTGCGCGTGTAAGTGCGGAACTGTTCGATGCGCTATCGAACAATCGGAACATCCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTTGGAACTGATGGACAAGCAGTCACTAATCAGCCGCAGGATGAACTGGNACGCTTACAACAACNTATCTCGAAGCAAGCTGGACACATGACGGACGANNGTGCCCACAACATNNTGACGCAGTTGGACGCACGAACCTTGGCCGGGCTAGCAGCAGGACAGAAAAACACCGAACCTTGNGTACNCAAGAGACANCGTCTCAGGTACCTGATCATCGCGACAANAAGNCCAANNCCCACTCCCCGGGGNCAAAGNCNNGGCNCGAAGGAACCCAAAGGACACAGGGAANAACACGCCAGCGGGCCTCNCGACACCCCGCCGAANGCAGGACAACANCAACACANTAAAAGTAGGACGCACGGACTGCAAGGTTAATTAAACCGTNACACGAGNACGAACTATNGCGCANNCCGGAGCACCGANAACAGGTATAAACATTAATAGCACCAANACCCGTGANAATGGAAACNGCTGAAGAGTNTANTCCCGGCGTNCGTNCACCNATCCGTAAAAAGATGGTGCACCNAAAGAAAAATGGTGTCCAGTGGGTTAATTTGGCACNCGCCCACAGAACACGAGCNNCAACAGCATCATGCCAAAGNCATAAAGCGAGTANGAAAAGAAAGAAAAAGACAAAAGAACGACTGTGCTNATTGCCAAAAAAGAGAAT]

[+] EMBL AL694686             [CANGAATCGCCCCGAGGTTTATCTGGAGGTTGACCTCGAATCGCAATCTGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCAAAACAAGGAGTCTGCTCGGCCACAGCTTGCGCGTGTAAGTGCGGAACTGTTCGATGCGCTATCGAACAATCGGAACATCCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTTGGAACTGATGGACAAGCAGTCACTAATCAGCCGCAGGATGAACTGGNACGCTTACAACAACNTATCTCGAAGCAAGCTGGACACATGACGGACGANNGTGCCCACAACATNNTGACGCAGTTGGACGCACGAACCTTGGCCGGGCTAGCAGCAGGACAGAAAAACACCGAACCTTGNGTACNCAAGAGACANCGTCTCAGGTACCTGATCATCGCGACAANAAGNCCAANNCCCACTCCCCGGGGNCAAAGNCNNGGCNCGAAGGAACCCAAAGGACACAGGGAANAACACGCCAGCGGGCCTCNCGACACCCCGCCGAANGCAGGACAACANCAACACANTAAAAGTAGGACGCACGGACTGCAAGGTTAATTAAACCGTNACACGAGNACGAACTATNGCGCANNCCGGAGCACCGANAACAGGTATAAACATTAATAGCACCAANACCCGTGANAATGGAAACNGCTGAAGAGTNTANTCCCGGCGTNCGTNCACCNATCCGTAAAAAGATGGTGCACCNAAAGAAAAATGGTGTCCAGTGGGTTAATTTGGCACNCGCCCACAGAACACGAGCNNCAACAGCATCATGCCAAAGNCATAAAGCGAGTANGAAAAGAAAGAAAAAGACAAAAGAACGACTGTGCTNATTGCCAAAAAAGAGAAT]


>consensus_8659#1 CANGAATCGCCCCGAGGTTTATCTGGAGGTTGACCTCGAATCGCAATCTGTCAGCTTTGA CCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTT GCTGTCAGACGGCAAAACAAGGAGTCTGCTCGGCCACAGCTTGCGCGTGTAAGTGCGGAA CTGTTCGATGCGCTATCGAACAATCGGAACATCCGACCATCCCCTGTGCGACGAGTGTAC CGATACGTTGCTTGGAACTGATGGACAAGCAGTCACTAATCAGCCGCAGGATGAACTGGN ACGCTTACAACAACNTATCTCGAAGCAAGCTGGACACATGACGGACGANNGTGCCCACAA CATNNTGACGCAGTTGGACGCACGAACCTTGGCCGGGCTAGCAGCAGGACAGAAAAACAC CGAACCTTGNGTACNCAAGAGACANCGTCTCAGGTACCTGATCATCGCGACAANAAGNCC AANNCCCACTCCCCGGGGNCAAAGNCNNGGCNCGAAGGAACCCAAAGGACACAGGGAANA ACACGCCAGCGGGCCTCNCGACACCCCGCCGAANGCAGGACAACANCAACACANTAAAAG TAGGACGCACGGACTGCAAGGTTAATTAAACCGTNACACGAGNACGAACTATNGCGCANN CCGGAGCACCGANAACAGGTATAAACATTAATAGCACCAANACCCGTGANAATGGAAACN GCTGAAGAGTNTANTCCCGGCGTNCGTNCACCNATCCGTAAAAAGATGGTGCACCNAAAG AAAAATGGTGTCCAGTGGGTTAATTTGGCACNCGCCCACAGAACACGAGCNNCAACAGCA TCATGCCAAAGNCATAAAGCGAGTANGAAAAGAAAGAAAAAGACAAAAGAACGACTGTGC TNATTGCCAAAAAAGAGAAT



consensusID : consensus_8659#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 674
fasta sequence
                              [GAGAAACGATAAAAGTATCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTA-GTTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCCAGCCTGGGCGAGCATACGCTGGCGGA-CTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGCCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCGGCAAG]

[+] EMBL CNS09I12             [GAGAAACGATAAAAGTATCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTA GTTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCCAGCCTGGGCGAGCATACGCTGGCGGA CTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGAAGAGCTGGAGCAGGAACTGGCCGGCCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCGGCAAG]
[+] EMBL BM646863             [     cCGATAAAAGTATCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTA GCTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGGCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCT                             ]
[+] EMBL CNS09QI7             [            AAGTATCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAACCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTACTTTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCCAGCCTGGGCGAGCATACGCTGGCGGA CTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGCCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCGGCAAG]


>consensus_8659#2 GAGAAACGATAAAAGTATCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGC GCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCA TGAATGACGCAAAGGTAAGCGTTAGTTTTTCCTGCCAGCGATGCATGCAGCCCATTCATG TCGACGATACATTCGCCAGCCTGGGCGAGCATACGCTGGCGGACTGGCGCTACCGATCAA CTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACC GTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCA AAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATC GAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACT GATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAA GAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGG CCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCA ATCCATCCGGCAAG



consensusID : consensus_8659#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [CCGCGGACGCGTGGGCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTAGCTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGGCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCGGCAAG]

[+] EMBL BM606374             [CCGCGGACGCGTGGGCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCATATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGAATGACGCAAAGGTAAGCGTTAGCTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGCGCTACCGATCAACTCACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAAACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGAACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGAAGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGGCTGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCGGCAAG]


>consensus_8659#3 CCGCGGACGCGTGGGCGCACATATCGCAAGTCCCCTTACAAAACAAAGAAAGGGTGCGCA TATTTATACAACCTAGCCATTTCCATCAGTTCCGCCAGAAAGTGTTCTTTTGTAGCATGA ATGACGCAAAGGTAAGCGTTAGCTTTTCCTGCCAGCGATGCATGCAGCCCATTCATGTCG ACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGCGCTACCGATCAACT CACATCTGGAGGTTGACCTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGT TCCGTGTAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTCAGACGGCCAAA ACAAGGAGTCGCTCGGCCACAGCTTGCGCGTGAAGGCGGAACTGTTCGATGCGCTATCGA ACAACTCGGAAATCGACCATCCCCTGTGCGACGAGTGTACCGATACGTTGCTGGAACTGA TGGACAAGCAGCTCAAGATCGCCGAGGATGAATGGAACGATTACAACAACTATCTGAAGA AGCTGGAAATGACGGACGATGTGCCAAACATTGACGAGTTGGAGCAGGAACTGGCCGGGC TGAAGGAGGACGAAACACGACTGCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAAT CCATCCGGCAAG



consensusID : consensus_8659#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 401
fasta sequence
                              [GTTGCACATATTTGGCAAGTCCCCCTTTACAAAACAAGAAAGGGTGGCATATTTATACAAACCCTANCCATTTCATCAGTTCCGCCAGAAAGTGTTCTTTTTGTAGCATGAATGACGGGCCAAAGGTAAAGCGGTTAGCTTTTTTCCCTGGCCAGGCGGAATGCATGCAGCCATTCATGTCGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGGCGCTACCGATCAACTCACATCTTGGGAGGTTGACCTTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTTCAGACGGCAAAACAAGGAGTCGCTCGGCACAGCTTGCGCGTGAAG]

[+] EMBL AL931289             [GTTGCACATATTTGGCAAGTCCCCCTTTACAAAACAAGAAAGGGTGGCATATTTATACAAACCCTANCCATTTCATCAGTTCCGCCAGAAAGTGTTCTTTTTGTAGCATGAATGACGGGCCAAAGGTAAAGCGGTTAGCTTTTTTCCCTGGCCAGGCGGAATGCATGCAGCCATTCATGTCGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGGCGCTACCGATCAACTCACATCTTGGGAGGTTGACCTTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTTCAGACGGCAAAACAAGGAGTCGCTCGGCACAGCTTGCGCGTGAAG]


>consensus_8659#4 GTTGCACATATTTGGCAAGTCCCCCTTTACAAAACAAGAAAGGGTGGCATATTTATACAA ACCCTANCCATTTCATCAGTTCCGCCAGAAAGTGTTCTTTTTGTAGCATGAATGACGGGC CAAAGGTAAAGCGGTTAGCTTTTTTCCCTGGCCAGGCGGAATGCATGCAGCCATTCATGT CGACGATACATTCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCTGGGCGCTACCGATCA ACTCACATCTTGGGAGGTTGACCTTCGAATCGCAATCGGTCAGCTTTGACCACTTTGTGC CACCGTTCCGTGTAAACCGATTCGACAAATGATACCAACGGGTTCATGTTGCTGTTCAGA CGGCAAAACAAGGAGTCGCTCGGCACAGCTTGCGCGTGAAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8659#3      ------------------------------------------------------------
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      ------------------------------------------------------------
consensus_8659#1      CANGAATCGCCCCGAGGTTTATCTGGAGGTTGACCTCGAATCGCAATCTGTCAGCTTTGA 60
consensus_8659#0      ----------------------------------------------------TGGTTTAA 8
                                                                                  

consensus_8659#3      ------------------------------------------------------------
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      ------------------------------------------------------------
consensus_8659#1      CCACTTTGTGCCACCGTTCCGTGTAACCGATTCGACAAATGATACCAACGGGTTC-ATGT 119
consensus_8659#0      CTTTTATTTATCACTAACGCAACAGAGAGTTATGCAATACATAGTGGATGTATTTTGTTC 68
                                                                                  

consensus_8659#3      ---------------------------------------CCGCGGACGCGTGGGCGCACA 21
consensus_8659#4      -------------------------------------------------GTTG-CACATA 10
consensus_8659#2      ------------------------------------GAGAAACGATAAAAGTATCGCACA 24
consensus_8659#1      TGCTGTCAGACGGCAAAACAAGGAGTCTGCTCGGCCACAGCTTGCGCGTGTAAGTGCGGA 179
consensus_8659#0      TATCTATACACGACGAGGACCATCGCCAACGAAGTAATATCACGAAAGTTCTGCAGTTTG 128
                                                                                  

consensus_8659#3      TATCGCAAGTCCCC--TTACAAAACAAAGAAAGGGTGCGCATATT---TATACAA----C 72
consensus_8659#4      TTTGGCAAGTCCCCCTTTACAAAACAA-GAAAGGGTG-GCATATT---TATACAAAC--C 63
consensus_8659#2      TATCGCAAGTCCCC--TTACAAAACAAAGAAAGGGTGCGCATATT---TATACAA----C 75
consensus_8659#1      ACTGTTCGATGCGC---TATCGAACAATCGGAACATCCGACCATCCCCTGTGCGACGAGT 236
consensus_8659#0      TCTCGCACTTGCAC-----GGGGGCAAAGGGAAGGTATTTTGAGT---TCTACCGCT--G 178
                        *      * * *          ***    *   *      *     * * *       

consensus_8659#3      CTAGCCATT--TCCATCAGTTCCG---CCAGA-AAGTGTTCTTTT-GTAGCATGAATGAC 125
consensus_8659#4      CTANCCATT--TC-ATCAGTTCCG---CCAGA-AAGTGTTCTTTTTGTAGCATGAATGAC 116
consensus_8659#2      CTAGCCATT--TCCATCAGTTCCG---CCAGA-AAGTGTTCTTTT-GTAGCATGAATGAC 128
consensus_8659#1      GTACCGATACGTTGCTTGGAACTG---ATGGACAAGCAGTCACTAATCAGC-CGCAGGAT 292
consensus_8659#0      CTTGTCCTCGGTGAACTGAGACGATACCCACGTGAGCACCCATTT-TAAATTCGTCAACA 237
                       *     *   *         *            **    *  *    *    *      

consensus_8659#3      G---CAAAGGTAAGC--GTTAGCTTTTCCTGCCAGC-------GATGCATGCAGCCCATT 173
consensus_8659#4      GGGCCAAAGGTAAAGCGGTTAGCTTTTTTCCCTGGCCAGGCGGAATGCATGCAGCC-ATT 175
consensus_8659#2      G---CAAAGGTAAGC--GTTAGTTTTTCCTGCCAGC-------GATGCATGCAGCCCATT 176
consensus_8659#1      G---AACTGGNACGCTTACAACAACNTATCTCGAAGCAAGCTGGACACATGACGGACGAN 349
consensus_8659#0      GGTACTTCAACGCTTTGGTCCACTGTTCTTCCGAGTTGAATTGGATCTTGATCGAAAAAC 297
                      *                         *    *            *        *      

consensus_8659#3      CATGTCGA--CGATACAT--------TCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCT 223
consensus_8659#4      CATGTCGA--CGATACAT--------TCGCTAGTCTGGGCGAGCATACGCTGGCGGAGCT 225
consensus_8659#2      CATGTCGA--CGATACAT--------TCGCCAGCCTGGGCGAGCATACGCTGGCGGA-CT 225
consensus_8659#1      NGTGCCCA--CAACATNN--------TGACGCAGTTGGACGCACGAACCTTGGCCGGGCT 399
consensus_8659#0      TGCTTCCGGTCGATGCATCTTCGATTTTTCCTTTCTCCATTAGGTAAGGCAGGCAAAAGT 357
                           *    * *             *  *     *          *    ***     *

consensus_8659#3      GG---CGCTACCGATCAAC-TCACATCT----GGAGGTTGACCT-CGA--ATCGCAATCG 272
consensus_8659#4      GGG--CGCTACCGATCAAC-TCACATCTTG--GGAGGTTGACCTTCGA--ATCGCAATCG 278
consensus_8659#2      GG---CGCTACCGATCAAC-TCACATCT----GGAGGTTGACCT-CGA--ATCGCAATCG 274
consensus_8659#1      AGCAGCAGGACAGAAAAACACCGAACCTTG--NGTACNCAAGAGACANC-GTCTCAGGTA 456
consensus_8659#0      CGGGATCTCGGCGGACAATTTCTTCTTTGAACTGCTGCAAACAGTCGAGGAATGCAACCA 417
                       *          *   **   *     *     *      *    *        **    

consensus_8659#3      GT-CAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAA-CCGATTCGACAAATGATACCA 330
consensus_8659#4      GT-CAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAAACCGATTCGACAAATGATACCA 337
consensus_8659#2      GT-CAGCTTTGACCACTTTGTGCCACCGTTCCGTGTAA-CCGATTCGACAAATGATACCA 332
consensus_8659#1      CC-TGATCATCGCGACAANAAGNCCAANNCCCACTCCCCGGGGNCAAAGNCNNGGCNCGA 515
consensus_8659#0      TCGCAGCATCGTATTTGGAGTCCCACAGAAAACGGAATCCTCCGTTCCCGTACAGCGGTA 477
                                             *                                   *

consensus_8659#3      ACGGGTTCATGTTGCTGT-CAGACGGCCAAAACAAGGA--GTCGCTCGGC----CACAGC 383
consensus_8659#4      ACGGGTTCATGTTGCTGTTCAGACGGC-AAAACAAGGA--GTCGCTCGGC-----ACAGC 389
consensus_8659#2      ACGGGTTCATGTTGCTGT-CAGACGGCCAAAACAAGGA--GTCGCTCGGC----CACAGC 385
consensus_8659#1      AGGAACCCAAAGGACACAGGGAANAAC-ACGCCAGCGG--GCCTCNCGACACCCCGCCGA 572
consensus_8659#0      GCTCTTTCCCTTCGCCCAGGACCTCTATGTAAGAATGATTGCCGTACGGTACC-AGGCGA 536
                             *      *                  *  *   * *   **          * 

consensus_8659#3      TTGCGCGTGAAGGCGGAACT-GTTCGATGCGCTATCG--AACAACTCGGAAATCGACCAT 440
consensus_8659#4      TTGCGCGTGAAG------------------------------------------------ 401
consensus_8659#2      TTGCGCGTGAAGGCGGAACT-GTTCGATGCGCTATCG--AACAACTCGGAAATCGACCAT 442
consensus_8659#1      ANGCAGGACAACANCAACAC-ANTAAAAGTAGGACGC--ACGGACTGCAAGGTTAATTAA 629
consensus_8659#0      TACTGTTTGAAGGTGAAATTCATTTTGCGTGCCAAGGCCGACAGCAGCAGACACGTCTGA 596
                               **                                                 

consensus_8659#3      CCCCTGTGCG-ACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGAT 499
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      CCCCTGTGCG-ACGAGTGTACCGATACGTTGCTGGAACTGATGGACAAGCAGCTCAAGAT 501
consensus_8659#1      ACCGTNACAC-GAGNACGAACTATNGCGCANNCCGGAGCACCGANAACAGGTATAAACAT 688
consensus_8659#0      CCCCAGGCCGCGTTTATCTCCGACCAGTCGACCGGAGCCGATGGT--AGCCGCCCGAGGC 654
                                                                                  

consensus_8659#3      CGCCGAGGATGAATGGAACGA----TTACAACAACTATCTGAAGAAGCTGGAAATGA--- 552
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      CGCCGAGGATGAATGGAACGA----TTACAACAACTATCTGAAGAAGCTGGAAATGA--- 554
consensus_8659#1      TAATAGCACCAANACCCGTGA----NAATGGAAACNG-CTGAAGAGTNTANTCCCGG--- 740
consensus_8659#0      GGAAGTTGTTTATCGTGCCAAAGTGTCCCGAGTGCCAGATGTGGAAGGTTGCATTGAAGA 714
                                                                                  

consensus_8659#3      CGGACGATGTGCCAAACATTGACGAGT----TGGAGCAGGAACTGGCCGGGCTGAAGGAG 608
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      CGGACGATGTGCCAAACATTGACGAGT----TGGAGCAGGAACTGGCCGGCCTGAAGGAG 610
consensus_8659#1      CGTNCGTNCACCNATCCGTAAAAAGATGG--TGCACCNAAAGAAAAATGGTGTCCAGTGG 798
consensus_8659#0      CGTTTGTTTTCTTCAGCTTCTCTAGCTGGCTCTGGGCATACGCCATCTGGCATTCGAGGG 774
                                                                                  

consensus_8659#3      GACGAAACACGACT-GCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCG 667
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      GACGAAACACGACT-GCTCGAGGAACTTAGCAGCCTGTCTCGCGAAGAGCAATCCATCCG 669
consensus_8659#1      GTTAATTTGGCACNCGCCCACAGAACACGAGCNNCAACAGCATCATGCCAAAGNCATAAA 858
consensus_8659#0      AACGGAACTCGTCC--TCGGTGGTTATTACGTCTCGGCGATGCTTCGTATACTCGCGCCA 832
                                                                                  

consensus_8659#3      GCAAG------------------------------------------------------- 672
consensus_8659#4      ------------------------------------------------------------
consensus_8659#2      GCAAG------------------------------------------------------- 674
consensus_8659#1      GCGAGTANGAAAAGAAAGAAAAAGACAAAAGAACGACTGTGCTNATTGCCAAAAAAGAGA 918
consensus_8659#0      GTATTTGTTCTCCTCGCGTTCGAGCCGCTGCTTTTCCTTTTTCCTGCTCCTCGACCGCTT 892
                                                                                  

consensus_8659#3      ------------------------------
consensus_8659#4      ------------------------------
consensus_8659#2      ------------------------------
consensus_8659#1      AT---------------------------- 920
consensus_8659#0      GCCGGATGGATTGCTCTTCGCGAGAAAGGC 922
                                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)