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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1497 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAAAAAAACCGCACACAAAACACTGCCACAAGCGGATATGTGTTACTCCAGAAGGAAGTACACATTCTACCGGTAAAAGAGACATAAAATGCTGCAACGATGAAAATATGCATGGCGTCGGACTTCTTTTACCCGAACATGGGTGGAGTGGAGGAGCACATCTTCAACCTGTCGCAGTGTTTGCTGGCCCGCGGCCACAACGTAATCGTCATCACGCACTCGTACGGCGACCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAGGTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGCAACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAACAAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAACACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAACGCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACAATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGACCTGCTGGCGGGCATACTGCCAAAGCTGAAACACCTGCCGCAGGTGCACTTCATCATCGGT-GGCGACGGGCCGAAGCGTGCCCTGCTGGAGGAAATACGCGAACGCAACAACATGCAGGACCGGGTGGTAATGCTCGGCGCGCTGGAGCACGCGAAGGTGCGCGACGTGCTGGTGCAGGGCCACATTTTCCTCAATACCTCGCTCACGGAAGCGTACTGCATGGCGATCGTGGANGCGGCCGCCTGCGGTCTGCAGGTCGTTTCGACCAAGGTGGGCGGCATTCCCGAGGTCCTTCCGGCCAGCCTTATCATCCTCACCGAACCGACCGTCGAATCGGTGTACCGGGGGTTGCGCGAGGCTATAAGGCGCGAGATGGAGAAGAAGCAAATCACCAGCGCCCGGTACGCGAACGGTTCGATTGATGCGCTTGCCCCGACACCGTCCGAAACGTCGTACGCCGGGCTGTGCGCCTTCGAGCGCAACCAGATCGTCGCCAACCTGTACAACTGGAACAATGTGACTGAGCGGACGGAAAAGGTGTACCGAACGGCGCTCCGGGAAGCGCCCGCCACGCTCGAGTCGATGATGAAGAACGTGCTGAAAAGTGGCGTGTGGCCCTTCGTGCTAGTCATTGCCCTGTGCCATCTTATACTGCGCTTTCTCGACTGGTTTGTGCCGCGCAAACACATCGACCTGTGCCATTCCGAGAATCCGTTCCTCAGCCCGGAC]
[+] EMBL BM647927 [CCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAAAAAAACCGCACACAAAACACTGCCACAAGCGGATATGTGTTACTCCAGAAGGAAGTACACATTCTACCGGTAAAAGAGACATAAAATGCTGCAACGATGAAAATATGCATGGCGTCGGACTTCTTTTACCCGAACATGGGTGGAGTGGAGGAGCACATCTTCAACCTGTCGCAGTGTTTGCTGGCCCGCGGCCACAACGTAATCGTCATCACGCACTCGTACGGCGACCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAGGTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGCAACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAACAAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAACACGGTCCTTCGGGCGAAGG ]
[+] EMBL BM598959 [ ccgTCCAGAAGGAAGTACACATTCTACCGGTAAAAGAGACATAAAATGCTGCAACGATGAAAATATGCATGGCGTCGGACTTCTTTTACCCGAACATGGGTGGAGTGGAGGAGCACATCTTCAACCTGTCGCAGTGTTTGCTGGCCCGCGGCCACAACGTAATCGTCATCACGCACTCGTACGGCGACCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAGGTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGCAACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAACAAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAACACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAACGCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACAATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGAC ]
[+] EMBL AGA283170 [ ggCACAACGTAATCGTCATCACGCACTCGTACGGCGACCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAGGTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGCAACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGT ]
[+] EMBL BX628683 [ CCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAGGTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGCAACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAACAAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAACACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAACGCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACAATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGACCTGCTGGCGGGCATACTGCCAAAGCTGAAACACCTGCCGCAGGTGCACTTCATCATCGGT GGCGACGGGCCGAAGCGTGCCCTGCTGGAGGAAATACGCGAACGCAACAACATGCAGGACCGGGTGGTAATGCTCGGCGCGCTGGAGCACGCGAAGGTGCGCGACGTGCTGGTGCAGGGCCACATTTTCCTCAATACCTCGCTCACGGAAGCGTACTGCATGGCGATCGTGGANGCGGCCGCCTGCGGTCTGCAGGTCGTTTCGACCAANGTGGGCGGCATTCCCGANGTCCTTCCGGGCAGCCTTATCATCCTCA ]
[+] EMBL BM583806 [ ccgGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCACTCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGGTCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACAAACAAGTTTTTGGAAATTTCGCTCGCTAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAATACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAACGCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACAATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGACCTGCTGGCGGGCATACTGCCAAAGCTGAAACACCTGCCGCACGTGCACTTCATCATCGGTGGGCGACGGGCCGAAGCGTGCCCTGCTGGAGG AATACGCGAACGCAACAAC ]
[-] EMBL AGA281578 [ TTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAACAAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGTAAAGAAAACACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAACGCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACAATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGACCTGCTGGCGGGCATACTGCCAAAGCTGAAACACCTGCCGCAGGTGCACTTCATCATCGGT GGCGACGGGCCGAAGCGTGCCCTGCTGGAGGAAATACGCGAACGCAACAACATGCAGGACCGGGTGGTAATGCTCGGCGCGCTGGAGCACGCGAAGGTGCGCGACGTGCTGGTGCAGGGCCACATTTTCCTCAATACCTCGCTCACGGAAGCGTACTGCATGGC ]
[+] EMBL AGA283331 [ GCGGTCTGCAGGTCGTTTCGACCAAGGTGGGCGGCATTCCCGAGGTCCTTCCGGCCAGCCTTATCATCCTCACCGAACCGACCGTCGAATCGGTGTACCGGGGGTTGCGCGAGGCTATAAGGCGCGAGATGGAGAAGAAGCAAATCACCAGCGCCCGGTACGCGAACGGTTCGATTGATGCGCTTGCCCCGACACCGTCCGAAACGTCGTACGCCGGGCTGTGCGCCTTCGAGCGCAACCAGATCGTCGCCAACCTGTACAACTGGAACAATGTGACTGAGCGGACGGAAAAGGTGTACCGAACGGCGCTCCGGGAAGCGCCCGCCACGCTCGAGTCGATGATGAAGAACGTGCTGAAAAGTGGCGTGTGGCCCTTCGTGCTAGTCATTGCCCTGTGCCATCTTATACTGCGCTTTCTCGACTGGTTTGTGCCGCGCAAACACATCGACCTGTGCCATTCCGAGAATCCGTTCCTCAGCCCGGAC]
[+] EMBL AGA280214 [ GCAGGTCGTTTCGACCAAGGTGGGCGGCATTCCCGAGGTCCTTCCGGCCAGCCTTATCATCCTCACCGAACCGACCGTCGAATCGGTGTACCGGGGGTTGCGCGAGGCTATAAGGCGCGAGATGGAGAAGAAGCAAATCACCAGCGCCCGGTACGCGAACGGTTCGATTGATGCGCTTGCCCCGACACCGTCCGAAACGTCGTACGCCGGGCTGTGCGCCTTCGAGCGCAACCAGATCGTCGCCAACCTGTACAACTGGAACAATGTGACTGAGCGGACGGAAAAGGTGTACCGAACGGCGCTCCGGGAAGCGCCCGCCACGCTCGAGTCGATGATGAAGAACGTG ]
[+] EMBL BX609154 [ CCCGAGGTCCTTCCGGCCAGCCTTATCATCCTCACCGAACCGACCGTCGAATCGGTGTACCGGGGGTTGCGCTAGGCTATAAGGCGCGAGATGGAGAAGAAGCAAATCACCAGCGCCCGGTACGCGAACGGTTCGATTGATGCGCTTGCCCCGACACCGTCCGAAACGTCGTACGCCGGGCTGTGCGCCTTCGAGCGCAACCAGATCGTCGCCAACCTGTACAACTGGAACAATGTGACTGAGCGGACGGAAAAGGTGTACCGAACGGCGCTCCGGGAAGCGCCCGCCACGCTCGAGTCGATGATGAAGAACGTGCTGAAAAGTGGCGTGTGGCCCT ]
consensusID : consensus_8689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 265 fasta sequence
[AACAACGAAGACGAAACGGAGTCTTATCAAATACTCAGAAGTTCCCGCAGTGCCACAAGGGAGTTGTGCGCGTAAAATGCAATTGGATGCAGCCCTTTGCGCCAGCAGCTCATTAGTCCACCGAGCAAAGGGCCGCTTGCCGTCAGGAAAATTTTTCCCTTTTCCGCCGTACCGCCGTGATGAGGGCCGCATTATCATCCGACGACCGTCGCTGGTGGCGCTTGCAGTCCGGGCTGAGGAACGGATTCTCGGAATGGCACAGGTC]
[+] EMBL AGA281910 [AACAACGAAGACGAAACGGAGTCTTATCAAATACTCAGAAGTTCCCGCAGTGCCACAAGGGAGTTGTGCGCGTAAAATGCAATTGGATGCAGCCCTTTGCGCCAGCAGCTCATTAGTCCACCGAGCAAAGGGCCGCTTGCCGTCAGGAAAATTTTTCCCTTTTCCGCCGTACCGCCGTGATGAGGGCCGCATTATCA ]
[+] EMBL AGA284614 [ CGCGTAAAATGCAATTGGATGCAGCCCTTTGCGCCAGCAGATCATTAGTCCACCGAGCAAAGGGCCGCTTGCCGTCAGGAAAATTTTTCCCTTTTCCGCCGTACCGCCGTGATGAGGGCCGCATTATCATCCGACGACCGTCGCTGGTGGCGCTTGCAGTCCGGGCTGAGGAACGGATTCTCGGAATGGCACAGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8689#0 CCGCCCACGCGTCCGCCCACGCGTCCGAAAATAGAAAAAAACCGCACACAAAACACTGCC 60
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 ACAAGCGGATATGTGTTACTCCAGAAGGAAGTACACATTCTACCGGTAAAAGAGACATAA 120
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AATGCTGCAACGATGAAAATATGCATGGCGTCGGACTTCTTTTACCCGAACATGGGTGGA 180
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GTGGAGGAGCACATCTTCAACCTGTCGCAGTGTTTGCTGGCCCGCGGCCACAACGTAATC 240
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GTCATCACGCACTCGTACGGCGACCGGAAGGGCATCCGGTACATGACGAACGGGCTGAAG 300
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GTGTACTACGTCCCGATCAAGGTGTTCTACAACCAGGTCGTGCTGCCCACCATGATCTGC 360
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AACATTCCACTGCTGCGGTACATACTGCTCCGGGAGCAGATTGACATCGTGCACGGCCAC 420
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 TCGGCGTTCAGTACGCTGGCGCACGAAACCATGAACGTGGCCCAGCTGCTCGGCTTGAGG 480
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 TCAGTGTTTACGGATCACAGTTTGTTCGGGTTTGCCGACCTGTCGGCGGTGGTTACGAAC 540
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AAGTTTTTGGAAATTTCGCTCGCCAACTGTAACCACTGCGTATGCGTGTCCCACACGGGT 600
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AAAGAAAACACGGTCCTTCGGGCGAAGGTGCACCAGGACAAGGTGTCGGTGATACCGAAC 660
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GCGGTCGATACGGCTTACTTTACACCGAATCCCTGCCGACGACCGAACGACGATGAAACA 720
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 ATCAATATCGTGGTCGTCTCGCGGCTGGTGTACCGGAAAGGCGTCGACCTGCTGGCGGGC 780
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 ATACTGCCAAAGCTGAAACACCTGCCGCAGGTGCACTTCATCATCGGTGGCGACGGGCCG 840
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 AAGCGTGCCCTGCTGGAGGAAATACGCGAACGCAACAACATGCAGGACCGGGTGGTAATG 900
consensus_8689#1 ---------------------------------AACAACGAAGACGAAACGG-AGTCTTA 26
****** * ** ** ** *
consensus_8689#0 CTCGGCGCGCTGGAGCACGCGAAGGTGCGCGACGTGCTGGTGCAGGGCCACATTTTCCTC 960
consensus_8689#1 TCAAATACTCAGAAGTTCCCGCAGTGCCACAAGGGAGTTGTGC-GCGTAAAATGCAATTG 85
* * * ** * ** ** * * * * * **** * * * ** *
consensus_8689#0 AATACCTCGCTC-ACGGAAGCGTACTGCATGGCGATCGTGGANGCGGCCGCCTGCGGTCT 1019
consensus_8689#1 GATGCAGCCCTTTGCGCCAGCAGCTCATTAGTCCACCGAGCAAAGGGCCGCTTGCCGTCA 145
** * * ** ** *** * * * ** * * ****** *** ***
consensus_8689#0 GCAGGTCGTTTCGACCAAGGTGGGCGGCATTCCCGAGGTCCTTCCGGCCAGCCTTATCAT 1079
consensus_8689#1 GGAAAATTTTT---CCCTTTTCCGCCGTACCGCCGTGATG----AGGGCCGCATTATCAT 198
* * *** ** * ** * * *** * * ** * ** *******
consensus_8689#0 CCTCACCGAACCGACCGTCGAATCGGTGTACCGGGGGTTGCGCGAGGCTATAAGGCGCGA 1139
consensus_8689#1 CC-------GACGACCGTCGC-TGGTGGCGCTTGCAGT----CCGGGCTGAGGAACGGAT 246
** ********* * * * * * ** * **** **
consensus_8689#0 GATGGAGAAGAAGCAAATCACCAGCGCCCGGTACGCGAACGGTTCGATTGATGCGCTTGC 1199
consensus_8689#1 TCTCGGAATGGCACAGGTC----------------------------------------- 265
* * * * ** **
consensus_8689#0 CCCGACACCGTCCGAAACGTCGTACGCCGGGCTGTGCGCCTTCGAGCGCAACCAGATCGT 1259
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 CGCCAACCTGTACAACTGGAACAATGTGACTGAGCGGACGGAAAAGGTGTACCGAACGGC 1319
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GCTCCGGGAAGCGCCCGCCACGCTCGAGTCGATGATGAAGAACGTGCTGAAAAGTGGCGT 1379
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 GTGGCCCTTCGTGCTAGTCATTGCCCTGTGCCATCTTATACTGCGCTTTCTCGACTGGTT 1439
consensus_8689#1 ------------------------------------------------------------
consensus_8689#0 TGTGCCGCGCAAACACATCGACCTGTGCCATTCCGAGAATCCGTTCCTCAGCCCGGAC 1497
consensus_8689#1 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||