cluster # 870

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Anopheles gambiae
cluster # 870 cluster # 870 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_870#0 length = 647 sequences # 1

consensus_870#1 length = 206 sequences # 1

consensusID : consensus_870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 647
fasta sequence

                              [CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAACAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAGTACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTAGCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCTAGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGCTGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGGCAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTCCCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCTCCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATATACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATCATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC]

[+] EMBL BM581325             [CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAACAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAGTACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTAGCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCTAGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGCTGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGGCAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTCCCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCTCCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATATACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATCATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC]




>consensus_870#0
CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAACAAA
CAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAGTACA
CGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTAGCTG
TAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCTAGCA
ACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGCTGCC
AGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGGCAGA
ATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTCCCCT
CCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCTCCTC
CCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATATACA
CACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATCATAA
TGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC

consensusID : consensus_870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 206
fasta sequence

                              [ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACAGGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAACAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAGAACACGGTGGCGTCACCTCCGGCTCG]

[+] EMBL BX613772             [ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACAGGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAACAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAGAACACGGTGGCGTCACCTCCGGCTCG]




>consensus_870#1
ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACA
GGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAA
CAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAG
AACACGGTGGCGTCACCTCCGGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_870#0      ------------------------------------------------------------
consensus_870#1      ACCAAATACGGCCACCCGGCCGAATTTAAAAGTACACCACATAAAAGAAAAAACAAAACA 60
                                                                                 

consensus_870#0      ----CCGCACAAATCGCGCTTTGTGGCGTCAAAACTTTTACACATTTAGTACAGCACAAA 56
consensus_870#1      GGCAAATCACACATCGCGCTGGGGGGCGTCAAAACTTTGACACAGTGAGTACAGCACAAA 120
                            **** ********  * ************** ***** * *************

consensus_870#0      CAAACAAACAAACACCCGCCCTCCTGGTAGAAAATCATAGTGAATCGTACGCAAACATAG 116
consensus_870#1      CAAACAAACAAACACCCGCCCCCCTGGTAGAAAATCATAGTGAATCGTACGCAAACACAG 180
                     ********************* *********************************** **

consensus_870#0      TACACGTTGTCTTCACCTTCGGCTCGCGTGGGTCGGAGATTAGTATGCCCTTTAGTAGTA 176
consensus_870#1      AACACGGTGGCGTCACCTCCGGCTCG---------------------------------- 206
                      ***** ** * ****** *******                                  

consensus_870#0      GCTGTAAGAGGTGATTAACAGTGCAGCATCGTGCAGCATCCGCATGTTTCCCATCGTGCT 236
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      AGCAACACACTAGAAGAATTTTACTTCAGCATGAGGATGCTCTTCCTCTTCTTCCACGGC 296
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      TGCCAGCCCTTAGAAAGGTTCGGTAGCTCCGCAGTGCGCTAGGCAGCGATCTTTTGCAGG 356
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      CAGAATGCGGCAAAACATTGTTGCGCAGCGCACTGGATACTAGTAGGTTCGATTTATGTC 416
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      CCCTCCCCACCCGTACATACTGCAACATGTTACTAGCATACGATTACTGCAACCCACCCT 476
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      CCTCCCTCTTACCCTGTTCATGCACACCAACACACGCCAACACCCGCCAAAACACACATA 536
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      TACACACAAGCACACCGTATACTTATGTATGTACTTGTTTAAAACATTGCGCATAGAATC 596
consensus_870#1      ------------------------------------------------------------
                                                                                 

consensus_870#0      ATAATGGTATGAATGACTAACCGCCTACAAATGGTGAGCTGGTGGTTGTAC 647
consensus_870#1      ---------------------------------------------------