cluster # 8711

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Anopheles gambiae
cluster # 8711 cluster # 8711 Sequences # 11 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8711#0 length = 366 sequences # 2
consensus_8711#1 length = 341 sequences # 6

consensus_8711#2 length = 316 sequences # 2
consensus_8711#3 length = 177 sequences # 1

consensusID : consensus_8711#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 366
fasta sequence

                              [GTACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACACATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAAC-GAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGG]

[+] EMBL CNS08T10             [GTACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACACATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAAC GAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCG ]
[+] EMBL CNS08CMK             [  ACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGGGACATGTTTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATTTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAA    T CTAAATAAAAATAAACTGTATTCAACAACAAAAAAAAAAAAAAAAAAAAAGGCCACATGTCCCCGgggggggg]




>consensus_8711#0
GTACGCTCAAAATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGA
TCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAA
GCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACACAT
GTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACAC
ACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAAT
AAAAATAAACTGTAATCAACAACGAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAG
CTGCGG

consensusID : consensus_8711#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 341
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCCCCCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAACG]

[+] EMBL BM575560             [CCGCCCACGCGTCCGCCCACGCGTCCG TGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAACG]
[+] EMBL BM592405             [                        CCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCTTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATC       ]
[+] EMBL BM627491             [                        CCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACG AAAAATTCTTACTAAATAAAAATAAACTGT           ]
[+] EMBL BM643402             [                      ccgaaATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGT           ]
[+] EMBL BM577053             [                      ccgaaATGAAATACGTGTTAGTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACG AAAAATTCTTACTAAATAAAAATAAACTGT           ]
[+] EMBL CNS08XAU             [                                                            GCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAAAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGAC                                                                                                                                                              ]




>consensus_8711#1
CCGCCCACGCGTCCGCCCACGCCCCCGATGAAATACGTGTTAGTCGCCCTGATGCTGGTA
GCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATAACATTGAGCAGTGAAGAA
AATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACAT
GACGAAAGCGACAGCATGTCTCCTGATGAAGGATAAAAATACTCCCCTAAACGCGTTTAC
ATGTAAAGAAAAAACACACAACAAGCTGCTAAAATTTGAATAAGAAATACAAAATGACGA
AAAAAATCTTACTAAATAAAAATAAACTGTAATCAACAACG

consensusID : consensus_8711#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 316
fasta sequence

                              [CCGCGCTCAAAATGAAATACGTGTTTGTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATACCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAAAAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAAGAAATACAAAATGACGAAAAAATCTAAATAAAAATAAACTGTATTC]

[+] EMBL BM593282             [CCGCGCTCAAAATGAAATACGTGTTTGTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATACCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAAAAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAAGAAATACAAAATGACGAAAAAATCTAAATAAAAATAAACTGTATTC]
[+] EMBL BM649963             [                                                                                                       CAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAGGCGACGGCATTTCTCCTGAAGATGACTAAGAATACTCCCCTAAACGCGCTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAATAATAGGAAATACAAAATGACGAACAAATCTACGAAAAAATct         ]




>consensus_8711#2
CCGCGCTCAAAATGAAATACGTGTTTGTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGA
TCGTTGTTGCACAAGGTATACCCATACCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGA
AGAGGAGCATCTCGCAGCATCGTGCAGCATTTACATCGTACCTTGCACATGACGAAAGCG
ACAGCATTTCTCCTGAAGATGACTAAAAATACTCCCCTAAACGCGTTTACATTTACAGCC
AAATAACACAGCAAGCTGCTATAATAATAAGAAATACAAAATGACGAAAAAATCTAAATA
AAAATAAACTGTATTC

consensusID : consensus_8711#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTAGTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTTTTGGACAAGGTGTACCCATTACATTGGGGAGTGAAGAAAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCCGGAT]

[-] EMBL CNS08CML             [GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTAGTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTTTTGGACAAGGTGTACCCATTACATTGGGGAGTGAAGAAAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCCGGAT]




>consensus_8711#3
GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTA
GTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTTTTGGACAAGGTGTACCCATTA
CATTGGGGAGTGAAGAAAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCCGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8711#0      ----------------------------------GTACGCTCAAAATGAAATACGTGTTA 26
consensus_8711#1      ------------------CCGCCCACGCGTCCGCCCACGCCCCCGATGAAATACGTGTTA 42
consensus_8711#2      ----------------------------------CCGCGCTCAAAATGAAATACGTGTTT 26
consensus_8711#3      GGAATTCCTCGAGGACTGTTGGCCCACTGGAGAGTTACGCTCAAAATAAAATACGTTTTA 60
                                                           *** *   ** ******** ** 

consensus_8711#0      GTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATA 86
consensus_8711#1      GTCGCCCTGATGCTGGTAGCACTGGTGTTTGCGATCGTCGCTACACAAGGTGTACCCATA 102
consensus_8711#2      GTCGCTCTGATGCTGGTAGCACTGGTGTTTGCGATCGTTGTTGCACAAGGTATACCCATA 86
consensus_8711#3      GTCGCCCTGATGCTGGTAGAACTGGTGTTTGCGATCGTT-TTGGACAAGGTGTACCCATT 119
                      ***** ************* ******************   *  ******* ******* 

consensus_8711#0      ACATTGAGCAGTGAAGA------AAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCA 140
consensus_8711#1      ACATTGAGCAGTGAAGA------AAATCCGGTGAAGAGAAGCATCTCGCAGCATCGTGCA 156
consensus_8711#2      CCAAGCAGCAGTGAAGTCAAACTGAACCTGGCGAAGAGGAGCATCTCGCAGCATCGTGCA 146
consensus_8711#3      ACATTGGGGAGTGAAGA------AAATCCGGTGAAAAGAAGCCTCTCGCAGCATCGTGCC 173
                       **    * *******        ** * ** *** ** *** **************** 

consensus_8711#0      GCATTTACATCGTACCTTGCACATGACGAAAGCGACA-CATGTCTCCTGATGAAGGATAA 199
consensus_8711#1      GCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATGTCTCCTGATGAAGGATAA 216
consensus_8711#2      GCATTTACATCGTACCTTGCACATGACGAAAGCGACAGCATTTCTCCTGAAGATGACTAA 206
consensus_8711#3      GGAT-------------------------------------------------------- 177
                      * **                                                        

consensus_8711#0      AAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATT 259
consensus_8711#1      AAATACTCCCCTAAACGCGTTTACATGTAAAGAAAAAACACACAACAAGCTGCTAAAATT 276
consensus_8711#2      AAATACTCCCCTAAACGCGTTTACATTTACAGCCAAATAACACAGCAAGCTGCTATAAT- 265
consensus_8711#3      ------------------------------------------------------------
                                                                                  

consensus_8711#0      TGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAA 319
consensus_8711#1      TGAATAAGAAATACAAAATGACGAAAAAAATCTTACTAAATAAAAATAAACTGTAATCAA 336
consensus_8711#2      --AATAAGAAATACAAAATGACGAAAAAAT-----CTAAATAAAAATAAACTGTATTC-- 316
consensus_8711#3      ------------------------------------------------------------
                                                                                  

consensus_8711#0      CAACGAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGCTGCGG 366
consensus_8711#1      CAACG------------------------------------------ 341
consensus_8711#2      -----------------------------------------------
consensus_8711#3      -----------------------------------------------