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Anopheles gambiae
cluster # 8717 cluster # 8717       Sequences # 11       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8717#0 length = 1341 sequences # 8  
consensus_8717#1 length = 660 sequences # 1  
consensus_8717#2 length = 523 sequences # 1  
consensus_8717#3 length = 502 sequences # 1  

consensusID : consensus_8717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1341
fasta sequence
                              [CCGGTGAACTATTAAGTAGAGAACTGTTTCCAGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAATGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGGACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTTAAACACATCCAGGGACGTTGGGGAATGGAGAATGGGAAGAAAGTTCTTCCAGGTCGATTGCTAGAGCTATCGGTAGCCTTTTAACACATGACGATGATCAACACACAGAAAAGGAAGGATCGCAGACGAAACGGGGGTG-TTTTTTTTTTAAAGGAAGAATTACGTAGCAAAAAGGGGGGGGGGGGGGAAACAACCAAAGAAGCGTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAGTAAGTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACACAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGAGGCAAATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTGGGTTTGTGGGGTGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAAGATTCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGATCGAAAAAAAAAACGACGAAAGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAACGATATTGCTAAAGAACAG]

[+] EMBL BM644996             [CCGGTGAACTATTAAGTAGAGAACTGTTTCCAGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAATGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGGACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTTAAACACATCCAGGGACGTTGGGGAATGGAGAATGGGAAGAAAGTTCTTCCAGGTCGATTGCTAGAGCTATCGGTAGCCTTTTAACACATGACGATGATCAACACACAGAAAAGGAAGGATCGCAGACGAAACGGGGGTG TTTTTTTTTTAAAGGAAGAATTACGTAGCAAAAA      GGGGGGGAAAACAACCAAAGAAGCGTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAGTAAGTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACACAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX616480             [                                                                                                                                                                                                                                                                                                                                                                                ATGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAACACATGACGATGATCAACACACAGAAAAGGAAGGATCGCAGACGAAACGGGGGTGTTTTTTTTTTTAAAGGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX622209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATTACGTAGCAAAAAGGGGGGGGGGGGGGAAACAACCAAAGAAGCGTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAGTAAGTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACACAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGAGGCAAATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTTGGTTTGTGGGGTGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAAGATTCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAG                                                                                                    ]
[+] EMBL BX623058             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AATTACGTAGCAAAAAGGGGGGGGGGGGGGAAACAACCAAAGAAGCGTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAGTAAGTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACACAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGAGGCAAATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTTGGTTTGTGGGGTG                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM636429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ccgATGCTTTACACAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGATGCAAATCTGAGCGATGGCCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATATCGTAAATTCCAAAACCAACCCTAAGTCAACTAATCCGCGTCGACGGTGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTATGTGTGTGGGGGTTTGTAGGGTGCGAGGTGTGTTCATGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAAGATTCAAAGACCCATTAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGATCGAAAAAAAAAACGACGAAAGTAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAACGATATTGCTAAAGAACAG]
[+] EMBL BM633067             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ccgAGGAGGCAAATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTGGGTTTGTGGGGTGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAAGATTCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCT                                                                                                                                                        ]
[+] EMBL BX616401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGGCAATGTGTATAGTGTGTAATGTGAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACGGTGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTATGTGTGTGGGGGTTTGTAGGGTGCGAGGTGTGTTCATGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACACAAGTTGATAAAATGAAT   AAAAAAACACACACACAGGAGAACAAGATTCAAAGACCCATTAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGATCG AAAAAAAAACGACGAAGGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAAC                       ]
[-] EMBL BX620931             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATTTATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACNTAATCCGCGTCGACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTGGGTTTGTGGGGTGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAGGAAAATAACNCAAGTTGATAAAATGAATAAAAAAAAAACACACACNCAGGAGAACAAGATTCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGATCGAAAAAAAAAACGACGAAAGGAGGAAGTATATTTGAGAATCTTTTTTTAAA                                ]


>consensus_8717#0 CCGGTGAACTATTAAGTAGAGAACTGTTTCCAGGAGAAATAGCTTTCGACGATGTAAAGG AAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAATGGAAGAGTAAATGTTGACGC CAACAAAAAAAGAAAACATGTGCTGGACATCGTTGGAGCATAAACGGTCGACAAGCGAGT TGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGA TTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTT TCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTTAAACACATCCAGGGACGTTGGGG AATGGAGAATGGGAAGAAAGTTCTTCCAGGTCGATTGCTAGAGCTATCGGTAGCCTTTTA ACACATGACGATGATCAACACACAGAAAAGGAAGGATCGCAGACGAAACGGGGGTGTTTT TTTTTTAAAGGAAGAATTACGTAGCAAAAAGGGGGGGGGGGGGGAAACAACCAAAGAAGC GTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAGTAA GTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACACAA AACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGAGGCA AATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGTGAG CTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTTATT ATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCGACG GGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAGCTT CTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTGGGTTTGTGGGG TGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAATAAG GAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAAGAT TCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATATTG TAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGATCGA AAAAAAAAACGACGAAAGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCA AACGATATTGCTAAAGAACAG



consensusID : consensus_8717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 660
fasta sequence
                              [CCGCCCACGCGTCCGGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAACGATATTGCTAAAGAACAGAAGAAAAAAAAACAGAACACTGTTGCAAGTAATAGCATGTTATAGCTAAAATATACATTTACTGATCAAATCAAACGTATAAAAACAAAACAACCTTATATATACACACTACAGAGCGGGCTTGCTTCAAAATAAGAGAGAAGATGAAAAAGAAAACTCCCTTTCCGAAAGACTAGAAAGGAAAATCACCAAAACCGATGGAAAAAAGCTGCATTGAATCGACGAAAGCACGACGAAGCGAAGTGATTAGTATAGCAGCAGAACAAGAAAAAGGATATTTTACCGAACGGGCAAGCCCACTTGCATAATAATACAATTTGAAGACAAGAACAGAATAGAGTTAAAAGAAAAATAAGAAAACAAAACAAAAAAAAACAACAGCAAAAAAGAGGAGGCAAACAAAACAAAATGATAAAATTCGTAGAAAAGGGCGGGAGAAAACAGTGAAGGGAGATATCGGAAAGGGGGAGAAAAACTCACATAAATCGCTACCACGTGCTACCAAAACTAATTAAACCAACAAAACATATTATTAATACCAAAACCAAAAACAAAACCCAAACACAGCATACTTACATGGA]

[+] EMBL BM638557             [CCGCCCACGCGTCCGGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAACGATATTGCTAAAGAACAGAAGAAAAAAAAACAGAACACTGTTGCAAGTAATAGCATGTTATAGCTAAAATATACATTTACTGATCAAATCAAACGTATAAAAACAAAACAACCTTATATATACACACTACAGAGCGGGCTTGCTTCAAAATAAGAGAGAAGATGAAAAAGAAAACTCCCTTTCCGAAAGACTAGAAAGGAAAATCACCAAAACCGATGGAAAAAAGCTGCATTGAATCGACGAAAGCACGACGAAGCGAAGTGATTAGTATAGCAGCAGAACAAGAAAAAGGATATTTTACCGAACGGGCAAGCCCACTTGCATAATAATACAATTTGAAGACAAGAACAGAATAGAGTTAAAAGAAAAATAAGAAAACAAAACAAAAAAAAACAACAGCAAAAAAGAGGAGGCAAACAAAACAAAATGATAAAATTCGTAGAAAAGGGCGGGAGAAAACAGTGAAGGGAGATATCGGAAAGGGGGAGAAAAACTCACATAAATCGCTACCACGTGCTACCAAAACTAATTAAACCAACAAAACATATTATTAATACCAAAACCAAAAACAAAACCCAAACACAGCATACTTACATGGA]


>consensus_8717#1 CCGCCCACGCGTCCGGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAA CGATATTGCTAAAGAACAGAAGAAAAAAAAACAGAACACTGTTGCAAGTAATAGCATGTT ATAGCTAAAATATACATTTACTGATCAAATCAAACGTATAAAAACAAAACAACCTTATAT ATACACACTACAGAGCGGGCTTGCTTCAAAATAAGAGAGAAGATGAAAAAGAAAACTCCC TTTCCGAAAGACTAGAAAGGAAAATCACCAAAACCGATGGAAAAAAGCTGCATTGAATCG ACGAAAGCACGACGAAGCGAAGTGATTAGTATAGCAGCAGAACAAGAAAAAGGATATTTT ACCGAACGGGCAAGCCCACTTGCATAATAATACAATTTGAAGACAAGAACAGAATAGAGT TAAAAGAAAAATAAGAAAACAAAACAAAAAAAAACAACAGCAAAAAAGAGGAGGCAAACA AAACAAAATGATAAAATTCGTAGAAAAGGGCGGGAGAAAACAGTGAAGGGAGATATCGGA AAGGGGGAGAAAAACTCACATAAATCGCTACCACGTGCTACCAAAACTAATTAAACCAAC AAAACATATTATTAATACCAAAACCAAAAACAAAACCCAAACACAGCATACTTACATGGA



consensusID : consensus_8717#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 523
fasta sequence
                              [CCGCGAGGCGATCTCGCAGATCAAAGACGAAGTGTCGATGCTGCAGAGCGAATACTCCAAAATGAGCTGGGACGAGAGCGTATCCATGACCACGGGCGATTTCGGGTCCAGCACGCCCGACAACGATCTGCAAGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAAAGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTAAATTAAAACACATCCGGTTGGGGAATGGAGATGGGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAA]

[+] EMBL BM613665             [CCGCGAGGCGATCTCGCAGATCAAAGACGAAGTGTCGATGCTGCAGAGCGAATACTCCAAAATGAGCTGGGACGAGAGCGTATCCATGACCACGGGCGATTTCGGGTCCAGCACGCCCGACAACGATCTGCAAGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAAAGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTAAATTAAAACACATCCGGTTGGGGAATGGAGATGGGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAA]


>consensus_8717#2 CCGCGAGGCGATCTCGCAGATCAAAGACGAAGTGTCGATGCTGCAGAGCGAATACTCCAA AATGAGCTGGGACGAGAGCGTATCCATGACCACGGGCGATTTCGGGTCCAGCACGCCCGA CAACGATCTGCAAGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGAT GCAAAGTAAATCAACCGAAAAGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACAT GTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCA AGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCAC ATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTAC AAACGCGCGTTAAATCTAAATTAAAACACATCCGGTTGGGGAATGGAGATGGGGGAAGAA AGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAA



consensusID : consensus_8717#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 502
fasta sequence
                              [CCGGAGATACAGGGCGCCTCGGACGAGGAGGAGGAGACGATGGATGGCGCGGCGAAGCGCGACCCGGAACAGCTGCTGCAGTTCGATGCATAGAGAAGCGCATGAGGGAACGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAAAGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTAAATTAAAACACATCCGTTGGGGAATGGAGAATGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAACAC]

[+] EMBL BM652051             [CCGGAGATACAGGGCGCCTCGGACGAGGAGGAGGAGACGATGGATGGCGCGGCGAAGCGCGACCCGGAACAGCTGCTGCAGTTCGATGCATAGAGAAGCGCATGAGGGAACGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAAAGGAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTTGTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTAAATTAAAACACATCCGTTGGGGAATGGAGAATGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTTTTAACAC]


>consensus_8717#3 CCGGAGATACAGGGCGCCTCGGACGAGGAGGAGGAGACGATGGATGGCGCGGCGAAGCGC GACCCGGAACAGCTGCTGCAGTTCGATGCATAGAGAAGCGCATGAGGGAACGGAGAAATA GCTTTCGACGATGTAAAGGAAACCAGCAAGGAACGGATGCAAAGTAAATCAACCGAAAAG GAAGAGTAAATGTTGACGCCAACAAAAAAAGAAAACATGTGCTGAACATCGTTGGAGCAT AAACGGTCGACAAGCGAGTTGATGGTGGCACCGCAGCAAGACAGAGCCGCATAGTGGGTT GTGCCGCAAGCAGTGTGGATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTC TACGTACAGCCAAACCTTTTCAAACCCTTTAAACTTACAAACGCGCGTTAAATCTAAATT AAAACACATCCGTTGGGGAATGGAGAATGGGAAGAAAGTTCTTCCACGTCGATTGCTGTA GCTATCGGTAGCCTTTTAACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8717#0      ------------------------------------------------------------
consensus_8717#3      ----------------------------CCGGAGATACAGGGCGCCTCGGACGAGGAGGA 32
consensus_8717#2      --------CCGCGAGGCGATCTCGCAGATCAAAGACGAAGTGTCGATGCTGCAGAGCGAA 52
consensus_8717#1      CCGCCCACGCGTCCGGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAACCAAA 60
                                                                                  

consensus_8717#0      -------------------------------------------CCGGT----GAACTATT 13
consensus_8717#3      GGAGACGATGGATGGCGCGGCGA-AGCGCGACCCGGAACAGCTGCTGC----AGTTCGAT 87
consensus_8717#2      TACTCCAAAATGAGCTGGGACGAGAGCGTATCCATGACCACGGGCGATTTCGGGTCCAGC 112
consensus_8717#1      CGATATTGCTAAAGAACAGAAGAAAAAAAAACAGAACACTGTTGCAAGTAATAGCATGTT 120
                                                                  *               

consensus_8717#0      AAGTA-GAGAACTGTTTCCAGGA-----GAAATAGCTTTCGACGATGTAAAGGAAACCAG 67
consensus_8717#3      GCATA-GAGAAGCGCATGAGGGAACGGAGAAATAGCTTTCGACGATGTAAAGGAAACCAG 146
consensus_8717#2      ACGCCCGACAACGATCTGCAAGGA----GAAATAGCTTTCGACGATGTAAAGGAAACCAG 168
consensus_8717#1      ATAGCTAAAATATACATTTACTGAT---CAAATCAAACGTATAAAAACAAAACAACCTTA 177
                             * *      *            ****           *   ***  ** *   

consensus_8717#0      CAAGGAACGGATGCAAAGTAAATCAAC--CGAAATGGAAGAGTAAATGTTGACGCCAACA 125
consensus_8717#3      CAAGGAACGGATGCAAAGTAAATCAAC--CGAAAAGGAAGAGTAAATGTTGACGCCAACA 204
consensus_8717#2      CAAGGAACGGATGCAAAGTAAATCAAC--CGAAAAGGAAGAGTAAATGTTGACGCCAACA 226
consensus_8717#1      TATATACACACTACAGAGCGGGCTTGCTTCAAAATAAGAGAGAAGATGAAAAAGAAAACT 237
                       *   *     * ** **        *  * ***    **** * ***   * *  *** 

consensus_8717#0      AAAAA---AGAAAACATGTGCTGGACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTG 182
consensus_8717#3      AAAAA---AGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTG 261
consensus_8717#2      AAAAA---AGAAAACATGTGCTGAACATCGTTGGAGCATAAACGGTCGACAAGCGAGTTG 283
consensus_8717#1      CCCTTTCCGAAAGACTAGAAAGGAAAATCACCAAAACC--GATGGAAAAAAGCTGCATTG 295
                                ** **  *    * * ***     * *    * **   * *   *  ***

consensus_8717#0      A--TGGTGGCACCGCAGCAAGACAGAGCCGCATAGTG-GGTTGTGCCGCAAGCAGTGTGG 239
consensus_8717#3      A--TGGTGGCACCGCAGCAAGACAGAGCCGCATAGTG-GGTTGTGCCGCAAGCAGTGTGG 318
consensus_8717#2      A--TGGTGGCACCGCAGCAAGACAGAGCCGCATAGTG-GGTTGTGCCGCAAGCAGTGTGG 340
consensus_8717#1      AATCGACGAAAGCACGACGAAGCGAAGT-GATTAGTATAGCAGCAGAACAAG-AAAAAGG 353
                      *   *  *  * * *  * *  *  **  *  ****   *  *     **** *    **

consensus_8717#0      ATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTT 299
consensus_8717#3      ATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTT 378
consensus_8717#2      ATTTCCCGCCATTTTACCACATTCTTCTCTACTCTACTTCTCTACGTACAGCCAAACCTT 400
consensus_8717#1      ATATTTTACCGAACGGGCAAGCCCACTTGCATAATAATACAATTTGAAGACAAGAACAGA 413
                      ** *    **       **    *   *  *   ** * *  *  * * *    ***   

consensus_8717#0      TTCAAACCCTTT-AAACTTACAAACGCGCGTTAAATCTTAAACACATCCAGGGACGTTGG 358
consensus_8717#3      TTCAAACCCTTT-AAACTTACAAACGCGCGTTAAATCTAAATTAAAAC-ACATCCGTTGG 436
consensus_8717#2      TTCAAACCCTTT-AAACTTACAAACGCGCGTTAAATCTAAATTAAAACACATCCGGTTGG 459
consensus_8717#1      ATAGAGTTAAAAGAAAAATAAGAAAACAAAACAAAAAAAAACAACAGCAAAAAAGAGGAG 473
                       *  *        ***  **  **  *     ***    **  * * *           *

consensus_8717#0      GGAATGGAGA-ATGGGAAGAAAGTTCTTCCAGGTCGATTGCTAGAGCTATCGGTAGCCTT 417
consensus_8717#3      GGAATGGAGA-ATGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTT 495
consensus_8717#2      GGAATGGAGATGGGGGAAGAAAGTTCTTCCACGTCGATTGCTGTAGCTATCGGTAGCCTT 519
consensus_8717#1      GCAAACAAAACAAAATGATAAAATTCGTAGAAAAGGGCGGGAGAAAACAGTGAAGGGAGA 533
                      * **   * *       * *** *** *  *    *   *    *   *  *   *    

consensus_8717#0      TTAACACATGACGATGATCAACACACAGAAAAGGAAGGATCGCAGACGAAACGGGGGTGT 477
consensus_8717#3      TTAACAC----------------------------------------------------- 502
consensus_8717#2      TTAA-------------------------------------------------------- 523
consensus_8717#1      TATCGGAAAGGGGGAGAAAAACTCACATAAATCGCTACCACGTGCTACCAAAACTAATTA 593
                      *                                                           

consensus_8717#0      TTTTTTTTTAAAGGAAGAATTACGTAGCAAAAAGGGGGGGGGGGGGGAAACAACCAAAGA 537
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      AACCAACAAAACATATTATTAATACCAAAACCAAAAACAAAACCCAAACACAGCATACTT 653
                                                                                  

consensus_8717#0      AGCGTAGCTCAGTTCGAAACATATTCAGTTCCGCATTCAATGAACTAAACTCTAAGCAAG 597
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ACATGGA----------------------------------------------------- 660
                                                                                  

consensus_8717#0      TAAGTTCTCTCCTTCACGCACTATATTCTAAACAATTGCATTCCAAGTAAATGCTTTACA 657
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      CAAAACGATGATGACCATTGACCGATAATGAGAATAAACGCGATGTAGGGCAAATAGGAG 717
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GCAAATCTGAGCGATGACCGAGCGATGATCACGCGCGGCAATGTGTATAGTGTGTAATGT 777
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GAGCTTTATTGTAGCATTGTTAGCTTCCTACTTTTGCGTCTACGCAAGCGCCGCTTATTT 837
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      ATTATCGTGCATTGATGCCGCAAAATCCAAAACCAACCCTAAGTCACCTAATCCGCGTCG 897
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      ACGGGGTGACTTTAATGCTAAGCTTCAAGCGTCTTTTAAGTCGACTACTTGTGTGAGCAG 957
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      CTTCTCCTTTGTGTGCAGCTTCTATTTCAAGGCGAATCTGTGTGTGTGTGTGGGTTTGTG 1017
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GGGTGCGAGGTGTGTTCAAGCTTACGTTTGCTTTCGTACTACCGCTTAGGACTGACGAAT 1077
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      AAGGAAAATAACACAAGTTGATAAAATGAATAAAAAAAAAACACACACACAGGAGAACAA 1137
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      GATTCAAAGACCCAATAGAGAGGGCTCGTGCGGCCGGATAGCTTTTAGTGCTGGGCAATA 1197
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      TTGTAGCAACAGGGGCCCCAGACAGTCAGCGATAGAGGCGTTAGAGGCGGTAGAAACGAT 1257
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      CGAAAAAAAAAACGACGAAAGGAGGAAGTATATTTGAGAATCTTTTTTTAAACAAACAAA 1317
consensus_8717#3      ------------------------------------------------------------
consensus_8717#2      ------------------------------------------------------------
consensus_8717#1      ------------------------------------------------------------
                                                                                  

consensus_8717#0      CCAAACGATATTGCTAAAGAACAG 1341
consensus_8717#3      ------------------------
consensus_8717#2      ------------------------
consensus_8717#1      ------------------------
                                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)