cluster # 876

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Anopheles gambiae
cluster # 876 cluster # 876 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_876#0 length = 599 sequences # 1

consensus_876#1 length = 535 sequences # 1

consensusID : consensus_876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [CCGCCCACGCGTCCGGTTTTTTTGTTCATCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGAGGGGCAAGATAGTACGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACACGGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACTAAGGAACCAAGAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCGTGTGTGTGTGTGTGTCCGACAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGGACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGACGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGCCGGAGCGGCTCACCGTGCACGTCGAGCACGAGCACTCCGAGGAGCAGGATCTGCTGAAATCGCTGAAGGAAATCTTCAGCCTCGCCCGGCAGGGCATACTGAAAGGGCGGTAAGCGGAAGCCGGCGGGCCAGCAGGGCCAGCAGCAGCAGGG]

[+] EMBL BM575375             [CCGCCCACGCGTCCGGTTTTTTTGTTCATCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGAGGGGCAAGATAGTACGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACACGGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACTAAGGAACCAAGAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCGTGTGTGTGTGTGTGTCCGACAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGGACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGACGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGCCGGAGCGGCTCACCGTGCACGTCGAGCACGAGCACTCCGAGGAGCAGGATCTGCTGAAATCGCTGAAGGAAATCTTCAGCCTCGCCCGGCAGGGCATACTGAAAGGGCGGTAAGCGGAAGCCGGCGGGCCAGCAGGGCCAGCAGCAGCAGGG]




>consensus_876#0
CCGCCCACGCGTCCGGTTTTTTTGTTCATCCTCCCGTTTTTCACCCTTCCCGGGACTGCA
CCCTTGGCCACTGTGCAGAGGGGCAAGATAGTACGGAGTTTATCTGCAAACCTTTTGCGC
CAGTCTCCAGTCCGGCCCTGGGCACACGGAGCTCCTGTTATTGCTGGCTGGACACGTTCC
TCCGCTCCGATGGCACTAAGGAACCAAGAAGCAATGAGTGAGTAATACACGCGTACGTGT
GCGTACCGTGTGTGTGTGTGTGTCCGACAACGAGAAGCAATTTATCAACACCAAAAACAA
AAACAAAAAACAAACCCCACACCATGGACAACCCGTTCGATCTGCACGACAAAGAGTCCG
CCACGTCCGGTGCCTTCCTGCTGCCGACGGACAGCGAAATCCTCGAGGGCTTCCTGTGCC
CCGTGTGCAAGCGCGATCTGCGCACGCCGGAGCGGCTCACCGTGCACGTCGAGCACGAGC
ACTCCGAGGAGCAGGATCTGCTGAAATCGCTGAAGGAAATCTTCAGCCTCGCCCGGCAGG
GCATACTGAAAGGGCGGTAAGCGGAAGCCGGCGGGCCAGCAGGGCCAGCAGCAGCAGGG

consensusID : consensus_876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence

                              [CCGCTCGACCGTTCAGTCCGCATCCAGCACGGCGGGCCAGCCCTACCGTGCAGCCAGTGAGTGTGGTTTGTTGTTGGAACACTCTCTCCTTTGAGCGAGTGTGTGTGTGTTTTTTTGTTCTTCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGGGGGGCAAGATAGTGCGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACACGGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACCAAGGAACCAAGAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCTGTGTGTGTGTCCGACAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGGACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGACGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGC]

[+] EMBL BM611843             [CCGCTCGACCGTTCAGTCCGCATCCAGCACGGCGGGCCAGCCCTACCGTGCAGCCAGTGAGTGTGGTTTGTTGTTGGAACACTCTCTCCTTTGAGCGAGTGTGTGTGTGTTTTTTTGTTCTTCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGGGGGGCAAGATAGTGCGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACACGGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACCAAGGAACCAAGAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCTGTGTGTGTGTCCGACAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGGACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGACGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGC]




>consensus_876#1
CCGCTCGACCGTTCAGTCCGCATCCAGCACGGCGGGCCAGCCCTACCGTGCAGCCAGTGA
GTGTGGTTTGTTGTTGGAACACTCTCTCCTTTGAGCGAGTGTGTGTGTGTTTTTTTGTTC
TTCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGGGGGGCAAG
ATAGTGCGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACAC
GGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACCAAGGAACCAA
GAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCTGTGTGTGTGTCCGACAACG
AGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGGACAAC
CCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGACGGAC
AGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_876#0      ------------------------------------------------------------
consensus_876#1      CCGCTCGACCGTTCAGTCCGCATCCAGCACGGCGGGCCAGCCCTACCGTGCAGCCAGTGA 60
                                                                                 

consensus_876#0      --------------------------------CCGCCCACGCGTCCG-GTTTTTTTGTTC 27
consensus_876#1      GTGTGGTTTGTTGTTGGAACACTCTCTCCTTTGAGCGAGTGTGTGTGTGTTTTTTTGTTC 120
                                                       **    * **  * ************

consensus_876#0      ATCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGAGGGGCAAG 87
consensus_876#1      TTCCTCCCGTTTTTCACCCTTCCCGGGACTGCACCCTTGGCCACTGTGCAGGGGGGCAAG 180
                      ************************************************** ********

consensus_876#0      ATAGTACGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACAC 147
consensus_876#1      ATAGTGCGGAGTTTATCTGCAAACCTTTTGCGCCAGTCTCCAGTCCGGCCCTGGGCACAC 240
                     ***** ******************************************************

consensus_876#0      GGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACTAAGGAACCAA 207
consensus_876#1      GGAGCTCCTGTTATTGCTGGCTGGACACGTTCCTCCGCTCCGATGGCACCAAGGAACCAA 300
                     ************************************************* **********

consensus_876#0      GAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACCGTGTGTGTGTGTGTGTCCGA 267
consensus_876#1      GAAGCAATGAGTGAGTAATACACGCGTACGTGTGCGTACC-----TGTGTGTGTGTCCGA 355
                     ****************************************     ***************

consensus_876#0      CAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGG 327
consensus_876#1      CAACGAGAAGCAATTTATCAACACCAAAAACAAAAACAAAAAACAAACCCCACACCATGG 415
                     ************************************************************

consensus_876#0      ACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGA 387
consensus_876#1      ACAACCCGTTCGATCTGCACGACAAAGAGTCCGCCACGTCCGGTGCCTTCCTGCTGCCGA 475
                     ************************************************************

consensus_876#0      CGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGC 447
consensus_876#1      CGGACAGCGAAATCCTCGAGGGCTTCCTGTGCCCCGTGTGCAAGCGCGATCTGCGCACGC 535
                     ************************************************************

consensus_876#0      CGGAGCGGCTCACCGTGCACGTCGAGCACGAGCACTCCGAGGAGCAGGATCTGCTGAAAT 507
consensus_876#1      ------------------------------------------------------------
                                                                                 

consensus_876#0      CGCTGAAGGAAATCTTCAGCCTCGCCCGGCAGGGCATACTGAAAGGGCGGTAAGCGGAAG 567
consensus_876#1      ------------------------------------------------------------
                                                                                 

consensus_876#0      CCGGCGGGCCAGCAGGGCCAGCAGCAGCAGGG 599
consensus_876#1      --------------------------------