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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 615 fasta sequence
[CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACGAATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA-CGGTACCAATGGGTGCAGATTTTCGAAAACAAGGGTGCAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT]
[+] EMBL CNS08DR5 [CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACTCATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGGTGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ]
[+] EMBL CNS09FGI [ tgGAATTCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ]
[+] EMBL CNS08V9Z [ tagATTCAATTTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ]
[+] EMBL CNS097JI [ tTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ]
[+] EMBL CNS09BHY [ CTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCA CGGTACCAATGGGTGCAGATTTTCGAAAACA ]
[+] EMBL CNS09PTY [ ATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAA ]
[+] EMBL BX610799 [ ATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCAGCGGTACCAATGGGTGCAGATTTTCGAAAACAAGGGTGCAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT]
[+] EMBL BX610798 [ TGTTCGACCCGACAGATCATCAACACCGCCGTTACTTTCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCC ]
[+] EMBL BX628182 [ AACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTGATGCGTGGATCGCGGAATTCCGCACGCTGGCGCAGCGGTACCAATGGGTGCAGATTTTCGAAAACA ]
consensusID : consensus_8767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 559 fasta sequence
[CGGCACGAGGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGCGCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCCACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAATTCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGGTGCCAACGAATAGGGCTGCGTCGAAACCCG]
[+] EMBL BX469641 [CGGCACGAGGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATGTTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGCGCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCCACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAATTCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGGTGCCAACGAATAGGGCTGCGTCGAAACCCG]
[+] EMBL BX610800 [ AGAACATCAACACCGCCGTTACAATCCACCGAACGGGCAGTGGGTGCGGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAGAATCTTCCCTCGTTGGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCC ]
consensusID : consensus_8767#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence
[CCGCCCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTG]
[+] EMBL BM630324 [CCGCCCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTTGCAGTGAAATGTTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTGGTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAGAATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGAACCAAAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGACTTTCCGGCCCTGCTGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCAGATAGCACCGGCGCAGGGCACCTGCCGGGTGATGTGCTTCCATCCGAAGTCTAACAAAACGCTACCACTGATGACGCCCAAGGAGATACGCAATGTTATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8767#0 CTGCGGTCTGCCAAGCCGCTGCCAAGTCGGTGCTCGCATTGGCCAATTCTATACACGAAT 60
consensus_8767#2 --------------------------------------------------------CCGC 4
consensus_8767#1 ------------------------------------------------------------
consensus_8767#0 TCAATGTTCTACCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTT-GCAGTGAAATG 119
consensus_8767#2 CCACGCGTCCGCCATTATCGTGGGCAGTTGTGTTCATCGCCTCATTTT-GCAGTGAAATG 63
consensus_8767#1 ---------CGGCACGA--GGNTGTAGTTGTGTTCATCGCCTCATTTTCGCAGTGAAATG 49
** * * * *********************** ***********
consensus_8767#0 TTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTG 179
consensus_8767#2 TTCGACCCGACAGATCATCAACAGCGCCGGTACAATCCACTGAACGGGCAGTGGGTGCTG 123
consensus_8767#1 TTCGACCCGACAGATCATCAACACCGCCGTTACAATCCACTGAACGGGCAGTGGGTGCTG 109
*********************** ***** ******************************
consensus_8767#0 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAG 239
consensus_8767#2 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCTGGTCAGGAAGAAAATCCCCATCCAGAG 183
consensus_8767#1 GTGAGTCCGCATCGCATGAAGCGGCCCTGGTCGGGCCAGGAAGAAAATCCCCAGCCAGAG 169
******************************** ** ***************** ******
consensus_8767#0 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 299
consensus_8767#2 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 243
consensus_8767#1 AATCTTCCCTCGTTTGATCCAACGAACCCGCTGTGTCCGGGAGTGACCCGCCCGAATGGA 229
************************************************************
consensus_8767#0 ACCAA-AAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGA-CTTTCCGGCCCTGC 357
consensus_8767#2 ACCAA-AAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGA-CTTTCCGGCCCTGC 301
consensus_8767#1 ACCAAGAAATCCCATCTACGAGTCAACGTTCGTGTTTACGAACGAGCTTTCCGGCCCTGC 289
***** *************************************** **************
consensus_8767#0 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCC--AGATAGCACCGGC 415
consensus_8767#2 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCC--AGATAGCACCGGC 359
consensus_8767#1 TGGAGCAGGTACCGGAGCCCCCGTCCAGCGATGATCCGCTGTTCCCAGGATAGCACCGGC 349
********************************************* ************
consensus_8767#0 GCAGGGC--ACCTGCCGGG-TGAT-GTGCTTCCATCCGAAGTCTAACA-AAACGCTA-CC 469
consensus_8767#2 GCAGGGC--ACCTGCCGGG-TGAT-GTGCTTCCATCCGAAGTCTAACA-AAACGCTA-CC 413
consensus_8767#1 GCAGGGGCGACCTGCCGGGGTGATAGTGCTTCCATCCGAAGTCTAACAGNAACGCTAGCC 409
****** ********** **** *********************** ******* **
consensus_8767#0 ACTGAT--GACGCCC--AAGGAGATACGCAA-TGTTATT-GATG-CGTGGATCGCGGAAT 522
consensus_8767#2 ACTGAT--GACGCCC--AAGGAGATACGCAA-TGTTATT-G------------------- 448
consensus_8767#1 ACTGATTGGACGGCCCAAGGGAGATACGCAACTGTTATTTGATGGCGTGGATCGCGGAAT 469
****** **** ** * ************ ******* *
consensus_8767#0 TCCGCACGCTGGC-GCACGG----TACCAATGGGTGCAGATTTTC--GAAAACAAGGGTG 575
consensus_8767#2 ------------------------------------------------------------
consensus_8767#1 TCCGCACGCTGGCCGCACGACGGTTACCAATGGGTGCAGATATTTCGAGAAACACAAGGG 529
consensus_8767#0 CAACGATGGGCTGCTCGAACCCGCATCCACACTGCCAGAT 615
consensus_8767#2 ----------------------------------------
consensus_8767#1 TGCCAACGAATAGGGCTGCGTCGAAACCCG---------- 559
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||