cluster # 878

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Anopheles gambiae
cluster # 878 cluster # 878 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_878#0 length = 792 sequences # 1

consensus_878#1 length = 713 sequences # 1

consensusID : consensus_878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence

                              [GCTTCATTGGGTAGCTTAAAATCACTTATTATACCGATAAAAAGAGCTTTACACTTTTCCACTAGACTACGTATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTCTGTATCATTCGACAGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAAAGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCTGTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACCCAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGGGTACGGCAAGAACGGTATAGCCGA]

[+] EMBL BX624510             [GCTTCATTGGGTAGCTTAAAATCACTTATTATACCGATAAAAAGAGCTTTACACTTTTCCACTAGACTACGTATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTCTGTATCATTCGACAGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAAAGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCTGTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACCCAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGGGTACGGCAAGAACGGTATAGCCGA]




>consensus_878#0
GCTTCATTGGGTAGCTTAAAATCACTTATTATACCGATAAAAAGAGCTTTACACTTTTCC
ACTAGACTACGTATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTCTGTATCATT
CGACAGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAAAGAGCTTAATTT
TGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCTGTATAAAACCTA
CCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGAC
CGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGT
CGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGA
AAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCG
CATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGA
AATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGAT
TCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAA
TGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACCCAAGAAGGCACA
GGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGGGTACGGCAAGAA
CGGTATAGCCGA

consensusID : consensus_878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [GACGATGACAAATATTGTCTCAGAGTACGACCATATCCAGTTGCACGATCTGACCTACATCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGCTGGTCCAGTACAAAAACCACCAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCAGCAGCAGCAGGAGCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCTGTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG]

[+] EMBL BX615244             [GACGATGACAAATATTGTCTCAGAGTACGACCATATCCAGTTGCACGATCTGACCTACATCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGCTGGTCCAGTACAAAAACCACCAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCAGCAGCAGCAGGAGCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCTGTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGGTGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACATGAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG]




>consensus_878#1
GACGATGACAAATATTGTCTCAGAGTACGACCATATCCAGTTGCACGATCTGACCTACAT
CGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGCTGGTCCAGTACAAAAACCACCA
AACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCAGCAGCAGCAGGAGCA
CGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCTGTA
TAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGGTGA
CGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCATAAC
GGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGACTT
GAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGGGTT
TGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTACGT
GTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCTGGG
TGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACATGAA
GACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_878#0      -GCTTCATTGGGTA--GCTTAAAATCACTTATTATA-CCGATAAAAAGAGCT---TTACA 53
consensus_878#1      GACGATGACAAATATTGTCTCAGAGTACG-ACCATATCCAGTTGCACGATCTGACCTACA 59
                       *         **  *  * * *  **  *  *** **  *   * ** **    ****

consensus_878#0      CTTTTCCACTAGACTACGT--ATTTAATTATCTTCCAGCATAATACCCTTTAGGCAGCTC 111
consensus_878#1      TCGGAACGCTTGGCATCGTTGGTTTCGGGCGGGTGGAGC-TGGTCCAGTACAAAAACCAC 118
                           * ** * *  ***   ***        *  *** *  * *  *  *   * * *

consensus_878#0      TGTATCATTCGAC---AGTGGTGCAACAACATACATTTCTCCCACTACACGACAACCTAA 168
consensus_878#1      CAAACCTTTGCCCTCAAATATCTGAAAAAGATCGAAATGGTACGGCA-GCAGCAGCAGGA 177
                        * * **   *   * *     ** ** **  *  *    *   *  *  ** *   *

consensus_878#0      AGAGCTTAATTTTGAATGTATCTTTTTTCCACCCGCCAACCTTGATTTCAACCCCAGCCT 228
consensus_878#1      GCACGCCTACAGCGAAAAGGACATCATGCTAAGCTGCAACAGTCCGTTCATCGTACGCCT 237
                       *     *    ***     * *  * * *  *  ****  *   **** *    ****

consensus_878#0      GTATAAAACCTACCGTGACAAGAAGTATCTCTACTTCCTGATGGAGGCCTGTCTCGGCGG 288
consensus_878#1      GTATAAAACCTACCGTGACAAGAAGTATCTTTACTTTCTGATGGAGGCCTGTCTCGGCGG 297
                     ****************************** ***** ***********************

consensus_878#0      TGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCAT 348
consensus_878#1      TGACGTCTGGACCGTGCTGCAGAAGAGTAAGTTCTTCGACGAGCGCACCGCTCGCTTCAT 357
                     ************************************************************

consensus_878#0      AACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGA 408
consensus_878#1      AACGGGCTGTGTCGTCGAAGCGTTCGAGTATCTGCACAGCCGGAACATGATCTACCGTGA 417
                     ************************************************************

consensus_878#0      CTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGG 468
consensus_878#1      CTTGAAGCCGGAAAATCTAATGCTGGACGAGAAGGGCTACATCAAGCTGGTTGACTTTGG 477
                     ************************************************************

consensus_878#0      GTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTA 528
consensus_878#1      GTTTGCCAAGCGCATCGGACCGAACCAGAAGACGTGGACGTTCGCCGGTACGCCAGAGTA 537
                     ************************************************************

consensus_878#0      CGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCT 588
consensus_878#1      CGTGTCGCCGGAAATCATCCTCAACAAGGGTCACGACCGGGCCGTCGACTACTGGGCGCT 597
                     ************************************************************

consensus_878#0      GGGTGTGCTGATTCACGAGCTGCTGGTCGGGAAGCCACCGTTCCGGGGCAAGAATCACAT 648
consensus_878#1      GGGTGTGCTGATCCACGAGCTGCTGGTCGGGAAACCACCGTTCCGGGGCAAGAATCACAT 657
                     ************ ******************** **************************

consensus_878#0      GAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCGTACC 708
consensus_878#1      GAAGACGTACAATGCCATCCTGCGCGGTATTGACATCATTGAGCTACCGTCCCGCG---- 713
                     ********************************************************    

consensus_878#0      CAAGAAGGCACAGGTGCTGATTAAGCGCCTCTGCCGACAGACGGCGGCCGAACGGCTGGG 768
consensus_878#1      ------------------------------------------------------------
                                                                                 

consensus_878#0      GTACGGCAAGAACGGTATAGCCGA 792
consensus_878#1      ------------------------