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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8798#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 640 fasta sequence
[GATCGCCNGAGGTGCCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT-GACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC---AAAAA----TT---GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT]
[+] EMBL AL930897 [GATCGCCNGAGGTGTTAGTGCGAGCGGTG CAGTGTCCCTATT TAACTCGAATNCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGG CCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GA CTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCCAAAAAAACTTTTTGGGGGGGCCTCTTCCCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTG AACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTG TATTTTTATAAACA ]
[+] EMBL BM621949 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGGACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAGCTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTTTAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGAT ]
[+] EMBL BM619963 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGTTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ]
[+] EMBL CNS08IE6 [ CAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT]
[-] EMBL CNS08IE7 [ TCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGT GACCTTCGA ACCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTAACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCC AAAAA TT GGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTTTTTCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGT CCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTA ]
consensusID : consensus_8798#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 608 fasta sequence
[CCGCCCACCCGTCCG-GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG]
[+] EMBL BM590109 [CCGCCCACGCGTCCG GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGTTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAATGATCTGTAGTAG]
[+] EMBL BM579724 [ CCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGACCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAGCTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTTTAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG]
[+] EMBL BM588287 [ CCGGCGA GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGT ]
[+] EMBL BM635300 [ ccgcga GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ]
[+] EMBL BM600889 [ ccgCCCTATTCTACCTCGAATCCAATCCCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCAACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTAC ]
[+] EMBL BM633334 [ ccgttTTTTTTTTTGGGCGCCCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATCAGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCAC ]
consensusID : consensus_8798#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG]
[+] EMBL BM629997 [CCGCGGACGCGTGGGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACTCGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTACGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTGCCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAATCGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGTGCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAAAAACGATCTGTAGTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8798#0 GATCGCCNGAGGTGCCGGTGCGAGCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATC 60
consensus_8798#1 --CCGCCCA-----CCCGTCCG-GCGGTGCCAGTGTCCCTATTCTACCTCGAATCCAATC 52
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 CCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCA 120
consensus_8798#1 CCATTACCATGTCGAAGCTTTACCACGGTGTCATCAATGTGGCCGATAAGTTTGTCCCCA 112
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 ACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGC 180
consensus_8798#1 ACGCGTTGCGGCCCCTGTGGAACCACGCTGCTGGACCGAAAACAGTTTTCTTCTGGGCGC 172
consensus_8798#2 ------------------------------------------------------------
consensus_8798#0 CCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGACC 240
consensus_8798#1 CCGTCTTTAAATGGGGCTTGGTCGTAGCCGGATTGAGTGACCTTCGACGTCCTGCGGATC 232
consensus_8798#2 -----------------------------------------------CCGCGGACGCGTG 13
* * **
consensus_8798#0 AGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 300
consensus_8798#1 AGCTGTCAGTTTCGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 292
consensus_8798#2 GGCGGACGCGTGGGCAGTCCGCTTCACTGGCGGCAACCGGAATAATTTGGTCGCGCTACT 73
** * * * ***********************************************
consensus_8798#0 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 360
consensus_8798#1 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 352
consensus_8798#2 CGCTGGTGATCATTCCCAAAAATTGGGGCCTCTTCTCGGTGAACGTGTTCGTCGCCGGTA 133
************************************************************
consensus_8798#0 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 420
consensus_8798#1 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 412
consensus_8798#2 CGCAAGTACTGCAACTGTATCGCGCGTGGGACTTTTCGCGCAAGGCACCGAAAACCGCTG 193
************************************************************
consensus_8798#0 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 480
consensus_8798#1 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 472
consensus_8798#2 CCTAGACGAATACGCAAGTGCGAATGCCGTACCTGCGGACTAATAACTCAATGTGAAAAT 253
************************************************************
consensus_8798#0 CGAAGCAGTATTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 540
consensus_8798#1 CGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 532
consensus_8798#2 CGAAGCAGTTTTTATAAAACGCTGCTATTTTTATAAACACTATTTCTGAAACTGTACAGT 313
********* **************************************************
consensus_8798#0 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 600
consensus_8798#1 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 592
consensus_8798#2 GCAGGTTTGATGTAAATGATATTAGAAGGTGTACAGTATAAATATATGCACAAAAGATAA 373
************************************************************
consensus_8798#0 AAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCTTTTTT 640
consensus_8798#1 AAACGATCTGTAGTAG------------------------ 608
consensus_8798#2 AAACGATCTGTAGTAG------------------------ 389
*** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||