cluster # 8811

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Anopheles gambiae
cluster # 8811 cluster # 8811 Sequences # 12 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8811#0 length = 1229 sequences # 6
consensus_8811#1 length = 742 sequences # 2
consensus_8811#2 length = 658 sequences # 1

consensus_8811#3 length = 506 sequences # 1
consensus_8811#4 length = 418 sequences # 1
consensus_8811#5 length = 410 sequences # 1

consensusID : consensus_8811#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1229
fasta sequence

                              [GCAGATCGGCACGAGGCCAGTTCAGTG-GTTTAC-CCTCCGAGTACAACGAG-TGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATC-TGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTG-ACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCC-GGTGCACGTTGAGAAGCATGTCCCGGTCGTCGTGAA-GAAGCC-GGTGTACGTCGAGAA-GCATGTTCCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGGTTTGGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATNCCCTATGCTCATCTTACACGCATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATGCCCAAAGCAATCCCCGAGCTCTTACGGCCGAGAATGTCCAACGGACCGCGTCTTCCCTCATCCAGTTTGCAGCGTGTTGTCGTCAGCTGTACATAAATTATTTTACCCTGTCTTACACGGTTGTGTAAGGGCACATGTAAAAAAAGAGAACTTTCCCAAGAAACAGATGAGACATGTTAAAAAAATGTAATAAAAA]

[+] EMBL BX468349             [GCAGATCGGCACGAGGCCAGTTCAGTG AGTTA  CCTCCGAGTACAACGAG TGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATC TGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTG ACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGGTGCACGTTGAGAAGCATGTCCCGGTCGTCGTGAAGGAAGCCGGGTGTACGTCGAGAAGGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AL932116             [             caggttaTTCAGTGAGTTTA  CCTCCCAGTAC ACGAG TGTGATATTTAGAAGAAGCCAAAACGAGCAGCTGAAAATTAAGGGATTCGTAGTGTTTGTGATGGCGATTGGCCTGGTTGCGAGTGCCGAGATCCAGAAGAAGGATGCTGAGGCACCGGCTGA GCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTTGCCTGTGGGATCTTGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGTACGACCATTACCAAGAAGGTGCACGTTCCGTACCCGGTCGAGGTGGAGAAGCACGTTCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCC GGTGCACGTTGAGAAGCATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX625739             [                            GTTTAC CCTCCGAGTACAACGAG TGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATC TGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTG ACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCC GGTGCACGTTGAGAAGCATGTCCCGGTCGTCGTGAA GAAGCC GGTGTACGTCGAGAA GCATGTTCCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGGTTTGGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATNC                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX619989             [                          agtnTTACTCCTCCGAGTACAACGAGNAGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATC TGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACNGCTGGGNGGAGCCTCATGTG AC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BX627454             [                                 C CCTCCGAGTACAACGAG TGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATC TGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTG ACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCC GGTGCACGTTGAGAAGCATGTCCCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX623161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCGTCGTGAA GAAGCC GGTGTACGTCGAGAA TCATGTTCCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGGTTTGGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATCCCCTATGCTCATCTTACACGCATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATGCCCAAAGCAATCCCCGAGCTCTTACGGCCGAGAATGTCCAACGGACCGCGTCTTCCCTCATCCAGTTTGCAGCGTGTTGTCGTCAGCTGTACATAAATTATTTTACCCTGTCTTACACGGTTGTGTAAGGGCACATGTAAAAAAAGAGAACTTTCCCAAGAAACAGATGAGACATGTTAAAAAAATGTAATAAAAA]




>consensus_8811#0
GCAGATCGGCACGAGGCCAGTTCAGTGGTTTACCCTCCGAGTACAACGAGTGTGATATTT
AGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATT
GCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAA
GCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAA
TCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGACGACCATT
ACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCGTACCCGGTT
AAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTC
CCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTC
AAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTG
CACGTTGAGAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTT
CCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCAC
TCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACC
GTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCA
GCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGGTTT
GGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATNCCCTATGCTCATCTTACA
CGCATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCC
CTGATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACC
TCCAACCAGCATGCCCAAAGCAATCCCCGAGCTCTTACGGCCGAGAATGTCCAACGGACC
GCGTCTTCCCTCATCCAGTTTGCAGCGTGTTGTCGTCAGCTGTACATAAATTATTTTACC
CTGTCTTACACGGTTGTGTAAGGGCACATGTAAAAAAAGAGAACTTTCCCAAGAAACAGA
TGAGACATGTTAAAAAAATGTAATAAAAA

consensusID : consensus_8811#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 742
fasta sequence

                              [CCAGAATCGNCCGAGGNNTNGAGTTACCTCCGAGTACAACCCAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGC-CTCATGTGACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGATACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGACGTACGTCGAGGTGCCGAAGACGTACCCGGTGCACGTTGAGCAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGATGTACGTCGAGGAAGCATGTTACCGGTGGTGGTCAAGTCGNACGGACTGGGAGCCTCATTACACCACTCGTACTCGGAGTTCCACATCGTGGTAAATGCCAGGACCAAGCTGGTAACTAAACCATCCAACTGGGTGAGATCGNTGCAACGGNACTGAATGGTGANC]

[+] EMBL BX467308             [CCAGAATCGNCCGAGGNNTNGAGTTACCTCCGAGTACAACCCAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGC CTCATGTGACGACCATTACCAAGAAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGATACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGACGTACGTCGAGGTGCCGAAGACGTACCCGGTGCACGTTGAGCAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGATGTACGTCGAGGAAGCATGTTACCGGTGGTGGTCAAGTCGNACGGACTGGGAGCCTCATTACACCACTCGTACTCGGAGTTCCACATCGTGGTAAATGCCAGGACCAAGCTGGTAACTAAACCATCCAACTGGGTGAGATCGNTGCAACGGNACTGAATGGTGANC]
[+] EMBL BX626333             [                                                        AAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACNGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCTNTCATGTGACGACCATTACCAAGAAGGTGCNCGT                                                                                                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_8811#1
CCAGAATCGNCCGAGGNNTNGAGTTACCTCCGAGTACAACCCAGTGTGATATTTAGAAGA
AGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTG
GTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAAC
GGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGCAC
GGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGACGACCATTACCAAG
AAGGTGCACGTCCCGTACCCGGTCGAGGTGGAGAAGCACGTCCCACCCGGTTAAGGTACC
GTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTA
CGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGATACCCAGTCAAGGTCC
CGGTGAAGGTGGTGCACAAGGACGTACGTCGAGGTGCCGAAGACGTACCCGGTGCACGTT
GAGCAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGATGTACGTCGAGGAAGCATGTTACC
GGTGGTGGTCAAGTCGNACGGACTGGGAGCCTCATTACACCACTCGTACTCGGAGTTCCA
CATCGTGGTAAATGCCAGGACCAAGCTGGTAACTAAACCATCCAACTGGGTGAGATCGNT
GCAACGGNACTGAATGGTGANC

consensusID : consensus_8811#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 658
fasta sequence

                              [CACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTTCCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGTTTTGGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATCCCCTATGCTCATCTTACACGCATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATGNCCNAAGCA]

[+] EMBL BX623483             [CACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTTCCGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGTTTTGGCAACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATCCCCTATGCTCATCTTACACGCATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATGNCCNAAGCA]




>consensus_8811#2
CACGTCCCGTACCCGGTTAAGGTACCGTACCCGGTCACCGTCGAGAAGCACGTGCCAGTC
GTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTGACCGT
CCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTG
CCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTTCCGGTGGTGGTCAAGTCGCACGGC
TGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTG
GTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAA
ACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACA
TACACACCAGTACCGTTTGATTGTGATCCTCGTTTTGGCAACAACGTTCCTCGCTGTGAT
GACTCTGTACTGCACATCCCCTATGCTCATCTTACACGCATCTTCTCTCAACGATCTCGA
CGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACGCACCCGCTCAG
CTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATGNCCNAAGCA

consensusID : consensus_8811#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [ATGCCGAGGTTTTCAGTGAGTTACCTCCGAGTACACGAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGNCTGTGGGATCTGGGCTACGGATTACGAATTCGTCGACGGCTGGGACTTCGCACATAGTCCCCACCGGCTGGTGAGGATGCGCTCATGTGACAGACGCCATTACCAAGGAATCGGTGCTAGCGTACCGTAACCGGGTCGAGGGTGGGTCAAGCACGGTTCCGGTAACCCGGTTAAGGGTATCCGTGATCCCGGCTCAACCGGTCAGCACGAAGCAGGTGGACCAGGTCGGTGNNTTGGGACGATAGACGNAGNGTCCGCGTGTGATACAGTCGAGTNACGCCATGGTTGCGCTGGGTGGCACGTT]

[+] EMBL AL930876             [ATGCCGAGGTTTTCAGTGAGTTACCTCCGAGTACACGAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGNCTGTGGGATCTGGGCTACGGATTACGAATTCGTCGACGGCTGGGACTTCGCACATAGTCCCCACCGGCTGGTGAGGATGCGCTCATGTGACAGACGCCATTACCAAGGAATCGGTGCTAGCGTACCGTAACCGGGTCGAGGGTGGGTCAAGCACGGTTCCGGTAACCCGGTTAAGGGTATCCGTGATCCCGGCTCAACCGGTCAGCACGAAGCAGGTGGACCAGGTCGGTGNNTTGGGACGATAGACGNAGNGTCCGCGTGTGATACAGTCGAGTNACGCCATGGTTGCGCTGGGTGGCACGTT]




>consensus_8811#3
ATGCCGAGGTTTTCAGTGAGTTACCTCCGAGTACACGAGTGTGATATTTAGAAGAAGCAA
AAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGC
GAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGA
GAAGAAGCAGGAAAAGCGTGGNCTGTGGGATCTGGGCTACGGATTACGAATTCGTCGACG
GCTGGGACTTCGCACATAGTCCCCACCGGCTGGTGAGGATGCGCTCATGTGACAGACGCC
ATTACCAAGGAATCGGTGCTAGCGTACCGTAACCGGGTCGAGGGTGGGTCAAGCACGGTT
CCGGTAACCCGGTTAAGGGTATCCGTGATCCCGGCTCAACCGGTCAGCACGAAGCAGGTG
GACCAGGTCGGTGNNTTGGGACGATAGACGNAGNGTCCGCGTGTGATACAGTCGAGTNAC
GCCATGGTTGCGCTGGGTGGCACGTT

consensusID : consensus_8811#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [CGCACGAGGTATGCACGTTGACGTCCGGTGCCGTACCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTTCCTGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATNTGTGATCCTCGGTTTGGCAACAACGTTCCT]

[+] EMBL AL933409             [CGCACGAGGTATGCACGTTGACGTCCGGTGCCGTACCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTCCCGGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTTCCTGGTGGTGGTCAAGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACGCACACATACACACCAGTACCGTTTGATNTGTGATCCTCGGTTTGGCAACAACGTTCCT]




>consensus_8811#4
CGCACGAGGTATGCACGTTGACGTCCGGTGCCGTACCAGTCAAGGTCCCGGTGAAGGTGG
TGCACAAGGAGTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTCC
CGGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTTCCTGGTGGTGGTCAAGTCG
CACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGCCAGCC
CAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGAACATG
CGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTCTCACG
CACACATACACACCAGTACCGTTTGATNTGTGATCCTCGGTTTGGCAACAACGTTCCT

consensusID : consensus_8811#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CAGATCGGCCGAGGATGTCAGTGAGTTTACCTCCGCAGTACACGAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGACGACCATTACCAAAAAAGTAGCACGTCCCNTACCCAGNGTCGACGTNGAGAAGCACGTACCATAACCCGNACTTAANNATACCAGTACCCGGATACACCGNTCGCAAAGCCACATGACCATC]

[+] EMBL BX468075             [CAGATCGGCCGAGGATGTCAGTGAGTTTACCTCCGCAGTACACGAGTGTGATATTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGCACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGACGACCATTACCAAAAAAGTAGCACGTCCCNTACCCAGNGTCGACGTNGAGAAGCACGTACCATAACCCGNACTTAANNATACCAGTACCCGGATACACCGNTCGCAAAGCCACATGACCATC]




>consensus_8811#5
CAGATCGGCCGAGGATGTCAGTGAGTTTACCTCCGCAGTACACGAGTGTGATATTTAGAA
GAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGTAGTGTTTGTGATGGCGATTGCCC
TGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGCTGAGGCACCGGCTGAGGCCGAAGCGA
ACGGCGAGAAGAAGCAGGAAAAGCGTGGCCTGTGGGATCTGGGCTACGGATACGAATCGC
ACGGCTGGGACTCGCACAAGTCCCACGGCTGGGAGGAGCCTCATGTGACGACCATTACCA
AAAAAGTAGCACGTCCCNTACCCAGNGTCGACGTNGAGAAGCACGTACCATAACCCGNAC
TTAANNATACCAGTACCCGGATACACCGNTCGCAAAGCCACATGACCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8811#3      -------ATGC-CGAGGTT--TTCAGTGAGTT-ACCTCCG-AGTACA--CGAGTGTGATA 46
consensus_8811#5      --CAGATCGGC-CGAGGAT--GTCAGTGAGTTTACCTCCGCAGTACA--CGAGTGTGATA 53
consensus_8811#1      CCAGAATCGNC-CGAGGNN--TN----GAGTT-ACCTCCG-AGTACAACCCAGTGTGATA 51
consensus_8811#0      -GCAGATCGGCACGAGGCCAGTTCAGTGGTTTACCCTCCG-AGTACAA-CGAGTGTGATA 57
consensus_8811#2      -CACGTCCCGTACCCGGTTAAGGTACCGTACC--CGGTCACCGTCGAGAAGCACGTGCCA 57
consensus_8811#4      ----------------------------------CGCACGAGGTATGCACGTTGACGTCC 26
                                                        *   *   **            *   

consensus_8811#3      TTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGT---AGTGTTTGTGATG 103
consensus_8811#5      TTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGT---AGTGTTTGTGATG 110
consensus_8811#1      TTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGT---AGTGTTTGTGATG 108
consensus_8811#0      TTTAGAAGAAGCAAAAACGAGCAGCTGAAAATGAAGGGATTCGT---AGTGTTTGTGATG 114
consensus_8811#2      GTCGTGGTGGAGAAGAAGGTCCCGGTGTACGTCGAGAAGCATGTGCCGGTGCACGTTG-A 116
consensus_8811#4      GGTGCCGTACCAGTCAAGGTCCCGGTGAAGGTGGTGCACAA------GGAGTACGTCG-A 79
                                     ** *  * * ** *  *   *            * *   **    

consensus_8811#3      GCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGC-TGAGGCACCGGCTGA 162
consensus_8811#5      GCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGC-TGAGGCACCGGCTGA 169
consensus_8811#1      GCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGC-TGAGGCACCGGCTGA 167
consensus_8811#0      GCGATTGCCCTGGTGGCGAGTGCCGAGATCAAGAAGAAGGATGC-TGAGGCACCGGCTGA 173
consensus_8811#2      CCGTCCGGTGCCGTACCCAGTCAAGGTCCCGGTGAAGGTGGTGCACAAGGAGTACGTCGA 176
consensus_8811#4      GGTGCCGAAGCCGTACCCGGTGCACGTT------------------GAGAAGCATGTCCC 121
                            *     **  *  **                          **      *    

consensus_8811#3      GGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGNCT--GTGG-GATCTGGGC-T 218
consensus_8811#5      GGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCT--GTGG-GATCTGGGC-T 225
consensus_8811#1      GGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCT--GTGG-GATCTGGGC-T 223
consensus_8811#0      GGCCGAAGCGAACGGCGAGAAGAAGCAGGAAAAGCGTGGCCT--GTGG-GATCTGGGC-T 229
consensus_8811#2      GGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGCATGTTCC-GGTGGTGGTCAAGTCGC 235
consensus_8811#4      GGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTTCCTGGTGGTGGTCAAGTCGC 181
                      **       *        *  * *    ** **** **  *   **** * **  * *  

consensus_8811#3      ACGGATTACGAATTCGTCGACGGCTGGGACTTCGCACATAGTCCCCACCGGCTGGTGAGG 278
consensus_8811#5      ACGGAT-ACGAAT-CGC--ACGGCTGGGACT-CGCACA-AGTCCCA--CGGCTGG-GAGG 276
consensus_8811#1      ACGGAT-ACGAAT-CGC--ACGGCTGGGACT-CGCACA-AGTCCCA--CGGCTGG-GAGG 274
consensus_8811#0      ACGGAT-ACGAAT-CGC--ACGGCTGGGACT-CGCACA-AGTCCCA--CGGCTGG-GAGG 280
consensus_8811#2      ACGGCTGGGAGCCTCATT-CCCACTCGTACT-----CGGAGTTCCACTCG--TGGTAAAT 287
consensus_8811#4      ACGGCTGGGAGCCTCATT-CCCACTCGTACT-----CGGAGTTCCACTCG--TGGTAAAT 233
                      **** *        *     *  ** * ***     *  *** **   **  ***  *  

consensus_8811#3      ATGCGCTCATGTGACAGACG--CCATTACCAAGGAATCGGTGCTAGCGTACCGTAACC-G 335
consensus_8811#5      A-GC-CTCATGTGACGA-----CCATTACCAAAAAAGTAGCAC----GTCCCNTACCCAG 325
consensus_8811#1      A-GC-CTCATGTGACGA-----CCATTACCAAGAAGGT-GCAC----GTCCCGTACCC-- 320
consensus_8811#0      A-GC-CTCATGTGACGA-----CCATTACCAAGAAGGT-GCAC----GTCCCGTACCC-- 326
consensus_8811#2      GCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTT---GCACCGTCTGAAT 344
consensus_8811#4      GCCAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTT---GCACCGTCTGAAT 290
                           * **  **         ****   *                 *  ** *      

consensus_8811#3      GGTCGAGGGTGGGTCAAGCACGGT-----TCCGGT-AACCCGG----TTAAGGGTATCCG 385
consensus_8811#5      NGTCGACGTNGAG--AAGCACG-------TACCAT-AACCCGNAC--TTAANNATACCAG 373
consensus_8811#1      GGTCGAGGTGGAG--AAGCACGTCCC--ACCCGGTTAAGGTACCG--TACCCGGTCACCG 374
consensus_8811#0      GGTCGAGGTGGAG--AAGCACGTCCCGTACCCGGTTAAGGTACCG--TACCCGGTCACCG 382
consensus_8811#2      GGT-GAACATGCGCCAAACATATCGT---CCCAAAACACTCACACCATTACACGCAGCAA 400
consensus_8811#4      GGT-GAACATGCGCCAAACATATCGT---CCCAAAACACTCACACCATTACACGCAGCAA 346
                       ** **    * *  ** **           *     *         *         *  

consensus_8811#3      TGATCCCGGCTCAAC---CGGTCAGCACGAAGCAGGTGGACC--AGGTCGGTGNNTTGGG 440
consensus_8811#5      TA--CCCGGATACAC---CGNTCG---CAAAGCCACATGACC--ATC------------- 410
consensus_8811#1      TCGAGAAGCACGTGC---CAGTCGTGGTGGAGAAGAAGGTCC--CGGT--GTACGTCGAG 427
consensus_8811#0      TCGAGAAGCACGTGC---CAGTCGTGGTGGAGAAGAAGGTCC--CGGT--GTACGTCGAG 435
consensus_8811#2      CACACTCTCTCACGCACACATACACACCAGTACCGTTTGATT-GTGATCCTCGTTTTGGC 459
consensus_8811#4      CACACTCTCTCACGCACACATACACACCAGTACCGTTTGATNTGTGATCCTCGGTTTGGC 406
                                    *   *   *               *                     

consensus_8811#3      ACGATAGACGNAGNGTCCGCGTGTGATACAGTCGAGTNACGCCATGGTTGCGCTGGGTGG 500
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      AAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCGATACCCAGTCAAGGTCCCGGTGAA 487
consensus_8811#0      AAGCATGTGCCGGTGCACGTTGACCGTCCGGTGCCG-TACCCAGTCAAGGTCCCGGTGAA 494
consensus_8811#2      AACAACGTTCCTCGCTGTGATGACTCTGTACTGCACATCCCCTATGCTCATCTTACACGC 519
consensus_8811#4      AACAACGTTCCT------------------------------------------------ 418
                                                                                  

consensus_8811#3      CACGTT------------------------------------------------------ 506
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      GGTGGTGCACAAGGACGTACGTCGAGGTGCCGAAGACGTACCCGGTGCACGTTGAGCAAG 547
consensus_8811#0      GGTGGTGCACAAGGA-GTACGTCGAGGTGCCGAAGCCGTACCCGGTGCACGTTGAGAAGC 553
consensus_8811#2      ATCTTCTCTCAACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTG 579
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      CATGTCCCGGTCGTCGTGAAGAAGCCGGATGTACGTCGAGGAAGCATGTTACCGGTGGTG 607
consensus_8811#0      ATGTCCCGGTCGTCGTGAAGAAGCCGGTGTACGTCGAGAAGCATGTTCCGGTGGTGGTCA 613
consensus_8811#2      ATCTACAACGCACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCC 639
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      GTCAAGTCGNACGGACTGGGAGCCTCATTACACCACTCGTACTCGGAGTTCCACATCGTG 667
consensus_8811#0      AGTCGCACGGCTGGGAGCCTCATTCCCACTCGTACTCGGAGTTCCACTCGTGGTAAATGC 673
consensus_8811#2      AACCAGCATGNCCNAAGCA----------------------------------------- 658
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      GTAAATGCCAGGACCAAGCTGGTAACTAAACCATCCAACTGGGTGAGATCGNTGCAACGG 727
consensus_8811#0      CAGCCCAACTGGTAACTAAACCATCCACCTGGGTGAGATGTTGCACCGTCTGAATGGTGA 733
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      NACTGAATGGTGANC--------------------------------------------- 742
consensus_8811#0      ACATGCGCCAAACATATCGTCCCAAAACACTCACACCATTACACGCAGCAACACACTCTC 793
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      TCACGCACACATACACACCAGTACCGTTTGATTGTGATCCTCGGTTTGGCAACAACGTTC 853
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      CTCGCTGTGATGACTCTGTACTGCACATNCCCTATGCTCATCTTACACGCATCTTCTCTC 913
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      AACGATCTCGACGATCATTGCTCATTCTATAGTGCAATTCTGTCCCCCTGATCTACAACG 973
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      CACCCGCTCAGCTGTCTCAATCTCGAGCTTCTAGGTGATCTCCAACCTCCAACCAGCATG 1033
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      CCCAAAGCAATCCCCGAGCTCTTACGGCCGAGAATGTCCAACGGACCGCGTCTTCCCTCA 1093
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      TCCAGTTTGCAGCGTGTTGTCGTCAGCTGTACATAAATTATTTTACCCTGTCTTACACGG 1153
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ------------------------------------------------------------
consensus_8811#5      ------------------------------------------------------------
consensus_8811#1      ------------------------------------------------------------
consensus_8811#0      TTGTGTAAGGGCACATGTAAAAAAAGAGAACTTTCCCAAGAAACAGATGAGACATGTTAA 1213
consensus_8811#2      ------------------------------------------------------------
consensus_8811#4      ------------------------------------------------------------
                                                                                  

consensus_8811#3      ----------------
consensus_8811#5      ----------------
consensus_8811#1      ----------------
consensus_8811#0      AAAAATGTAATAAAAA 1229
consensus_8811#2      ----------------
consensus_8811#4      ----------------