cluster # 8840

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Anopheles gambiae
cluster # 8840 cluster # 8840 Sequences # 12 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8840#0 length = 1313 sequences # 7
consensus_8840#1 length = 631 sequences # 1
consensus_8840#2 length = 630 sequences # 1

consensus_8840#3 length = 620 sequences # 1
consensus_8840#4 length = 557 sequences # 1
consensus_8840#5 length = 101 sequences # 1

consensusID : consensus_8840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1313
fasta sequence

                              [AGATCGCCCGAGGTGAGTTCACAGAAACAGCAACTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCAA-GAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCA-TTAAAGCAGA-GGGTAGTGTTATCGTGGATGCATTGGGGAGCA-TTTTAGATCTATCACCCGAACCA-GAGGACAGTTTAGGAGCGAAA-GTTCGAAAAGTTACTGCTGAAGCTACAACGCCAGAAATACTTG-ATGTGAAAGCA-GAATTGCTTGAGCCAGATCATCACCA-GGAATCCAAGGAACTGAAGCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACCAGAGGACAACTCTCATT-CTTCGGGAGAAAGTCAATATTC-GAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGAC-AAC-GGT-AAATATGAAAATAA-GGAAAGCCAACGCG-AATAC-GGAAGCTATGAGCAGAAAAAGTTCGTCGAAG-ATAGCAGTCATAAG-AAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAACAATGGTCGTTATTCAGATTCTTATATTTCAGCTGACGGTAGC---GATGATGATGATGATGATGATGAGGATGATCATTACAAAAAGAAATTCGACCAGCGTGAAACATTTAGCGATCACAATCATGACGGCAAGTCTTCTGAAACAAATCGGGCTAAGCAAACGGAGGCACTCGACGAACGGATACAACACATTCGCGAACCAGCTGGCGAAGGTTCGTATCTGGAGCAATACAAACGGGCAGAATCGAAAAAAGGAAAACGTCACCAGGAAGATGATTATTACCACGGTCAGAAGCATAATAAGCATGCGAATAAGCAGCAGCAACAGCGGAAAGACGGAGACTGGAACGAGAAAAGGTATAAGGGCAGAGATGAATACCGTCACAATGGCGGTAAACATGGTGAAAGAGGATCAGGTGATCAACATTGGCAGGAACGCACGAAGCATGGTCGGCAGGAAGCTAGGGATGAGCAAAGAAAACGGGTGGAAAATAATTGGTATCTAGAGCGAGGAAATCAGCGAGAGGAAGACCGAATTTTCCATTAGTCAAACCGTAGAGCGCGATAAGTGAGGATTTCATAGGCATCCCGCTGTAAAATTCATAAAACTCTTTTCTATTCAATTTTTCCTTTCACCCACACTAAACATTATAATTTT]

[+] EMBL AL930051             [AGATCGCCCGAGGTGAGTTCACAGAAACAGCAACTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCAA GAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCACTTAAAGCAGAGGGGTAGTGTTATCGTGGATGCATTGGGGAGCACTTTTAGATCTATCACCCGAACCA GAGGACAGTTTAGGAGCGAAACGTTCGAAAAGTTACTGCTGAAGCTACAACGCCAGAAATACTTG ATGTGAAAGCACGAATTGCTTGAGCCAGATCATCACCA GGAATCCAAGGAACTGAAGCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACCAGAGGACAACTCTCATT CTTCGGGAGAAAGTCAATATTC GAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGAC AAC GGTCAAATATGAAAATAA GGAAAGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX619866             [                                                           ATTAATCCAGCAACATTAGAACCATCTCAAGGAAAAGCGCTCTNNCCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCA TTAAAGCAGA GGGTAGTGTTATCGTGGATGCATTGGGGAGCA TTTTAGATCTATCACCCGAACCANNGGGACAGTTTAGGAGCGAAA GTTCGAAAAGTTACTGCTGAAGCTACAACGCCAGAAATACTTGNATGTGAAAGCA GAATTGCTTNNGCCANNTCATCACCAGGGAATCCAAGGAACTGAAGCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACCAGAGGACAACTCTCATTCCTTCGGGAGAAAGTCAATATTCNGAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGACNAACGGGT AAATATGAAAATAANGAAAAGCCAACGCGNAATACGGGAAGCTATGAGCAGAAAAAGNNCGTCGAAGNATAGCAGTCATAAGCAAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGACCGAACCAATGGTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX621381             [                                                                     CAACATTAGAACCATCTCAA GAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCA TTAAAGCAGA GGGTAGTGTTATCGTGGATGCATTGGGGAGCA TTTTAGATCTATCACCCGAACCA GAGGACAGTTTAGGAGCGAAA GTTCGAAAAGTTACTGCTGAAGCTACAACGCCAGAAATACTTG ATGTGAAAGCA GAATTGCTTGAGCCAGATCATCACCA GGAATCCAAGGAACTGAAGCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACCAGAGGACAACTCTCATT CTTCGGGAGAAAGTCAATATTC GAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGAC AAC GGT AAATATGAAAATAA GGAAAGCCAACGCG AATAC GGAAGCTATGAGCAGAAAAAGTTCGTCGAAG ATAGCAGTCATAAG AAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAACAATGGTCGTTATTCAGATTCTTATATTTCAGCTGACGGTAGC   GATGATGATGATGATGATGATGAGGATGATCATTACAAAAAGAAATTCGACCAGCGTGAAACATTTAGCGATCACNATCATGACGGCAAGTCTTCTGAAACAAATCGGGCTAAGCAAACGGANGCACTCGACGAACGGATACNACACATTCGCGAcc                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX616829             [                                                                                                                                                                                                                                                                                                          TGAAAGCA GAATTGCTTGAGCCAGATTATCACCA GAAATCCAAGGAACTGAATCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACAAGAGGACAACTCTCATT CTTCGGGAGAAAGTCAATATTC GAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGAC AAC GGT AAATATGAAAATAA GGAAAGCCAACGCG AATAC GGAAGCTATGAGCAGAAAAAGTTCGTCGAAG ATAGCAGTCATAAG AAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAACAATGGTCGTTATTCAGATTCTTATATTTCAGCTGACGGTAGC      GATGATGATGATGATGATGAGGATGATCATTACAAAAAGAAATTTGACCAGCGTGAAACATTTAGCGATCACAATCATGACGGCAAGTCTTTTGAAACAAATCGGGCAAAGCAAACGGAGGCACTCGACGAACGGATACAACACATTCGCGAACCAGCTGGCGAAGGTTCGTATCTGTAGCAATACAAACGGGCAGAATCGAAAAAAGGAAAACGTCACCAGGAATATGATTATTACCACGGTCAGAAGCATAATAAGCATGCAAATAAGCAGCAGCAACAGCGGAAAGACGGAGACTG                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BM587749             [                                                                                                                                                                                                                                                                                                                                                                                                                            ccgCAACTCTCATT CTTCGGGAGAAAGTCAATATTC GAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGAC AAC GGT AAATATGAAAATAA GGAAAGCCAACGCG AATAC GGAAGCTATGAGCAGAAAAAGTTCGTCGAAG ATAGCAGTCATAAG AAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAACAATGGTCGTTATTCAGATTCTTATATTTCAGCTGACGATAGCGATGATGATGATGATGATGATGATGAGGATGATCATTACAAAAAGAAATTCGACCAGCGTGAAACATTTAGCGATCACAATCATGACGGCAAGTCTTCTGAAACAAATCGGGCTAAGCAAACGGAGGCACTCGACGAACGGATACAGCACATTCGCGAACCAGCTGGCGAAGGTTCGTATCTGGAGCAATACAAACGGGCAGAATCGAAAAAAGGAAAACGTCACCAGGAAGATGATTATTACCACGGTCAGAAGCATAATAAGCATGCGAATAAGCAGCAGCAACAGCGGAAAGACGGAGACTGGAACGAGAAAAGGTATAAGGGCAGAGATGAATACCGTCACAATGGCGGTAAAC                                                                                                                                                                                                                                                                    ]
[+] EMBL BX612189             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGCCAACGCG AATAC GGAAGCTATGAGCAGAAAAAGTTCGTCGAAG ATAGCAGTCATAAG AAAAGTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM643257             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ccGCAAGTCTTCTGAAACAAATCGGGCTAAGCAAACGGAGGCACTCGACGAACGGATACAGCACATTCGCGAACCAGCTGGCGAAGGTTCGTATCTGGAGCAATACAAACGGGCAGAATCGAAAAAAGGAAAACGTCACCAGGAAGATGATTATTACCACGGTCAGAAGCATAATAAGCATGCGAATAAGCAGCAGCAACAGCGGAAAGACGGAGACTGGAACGAGAAAAGGTATAAGGGCAGAGATGAATACCGTCACAATGGCGGTAAACATGGTGAAAGAGGATCAGGTGATCAACATTGGCAGGAACGCACGAAGCATGGTCGGCAGGAAGCTAGGGATGAGCAAAGAAAACGGGTGGAAAATAATTGGTATCTAGAGCGAGGAAATCAGCGAGAGGAAGACCGAATTTTCCATTAGTCAAACCGTAGAGCGCGATAAGTGAGGATTTCATAGGCATCCCGCTGTAAAATTCATAAAACTCTTTTCTATTCAATTTTTCCTTTCACCCACACTAAACATTATAATTTT]




>consensus_8840#0
AGATCGCCCGAGGTGAGTTCACAGAAACAGCAACTAAACAGGAAAATTATAACAAATTTA
TTAATCCAGCAACATTAGAACCATCTCAAGAAAAGCGCTCTGACCCTAGTAAACCAGCAT
CACCATTTAATATCGATTATCAGAAAGCATTCGATGCCATTAAAGCAGAGGGTAGTGTTA
TCGTGGATGCATTGGGGAGCATTTTAGATCTATCACCCGAACCAGAGGACAGTTTAGGAG
CGAAAGTTCGAAAAGTTACTGCTGAAGCTACAACGCCAGAAATACTTGATGTGAAAGCAG
AATTGCTTGAGCCAGATCATCACCAGGAATCCAAGGAACTGAAGCACGACGATAGGAAAC
AAAGAAAGTACAGGCCGGAAGAAAAGAAAACACATAAACCAGAGGACAACTCTCATTCTT
CGGGAGAAAGTCAATATTCGAAACGTAAAGACGGCAGTAATCATTCGACGCACGAAAGTC
GTCATAAGAAGCAAAAGAATGGTCGTGCAGACAACGGTAAATATGAAAATAAGGAAAGCC
AACGCGAATACGGAAGCTATGAGCAGAAAAAGTTCGTCGAAGATAGCAGTCATAAGAAAA
GTCATAAAAAAAAGCATGACGACGATGGCAAACATAAATATGTTCCGGAACGAAACAATG
GTCGTTATTCAGATTCTTATATTTCAGCTGACGGTAGCGATGATGATGATGATGATGATG
AGGATGATCATTACAAAAAGAAATTCGACCAGCGTGAAACATTTAGCGATCACAATCATG
ACGGCAAGTCTTCTGAAACAAATCGGGCTAAGCAAACGGAGGCACTCGACGAACGGATAC
AACACATTCGCGAACCAGCTGGCGAAGGTTCGTATCTGGAGCAATACAAACGGGCAGAAT
CGAAAAAAGGAAAACGTCACCAGGAAGATGATTATTACCACGGTCAGAAGCATAATAAGC
ATGCGAATAAGCAGCAGCAACAGCGGAAAGACGGAGACTGGAACGAGAAAAGGTATAAGG
GCAGAGATGAATACCGTCACAATGGCGGTAAACATGGTGAAAGAGGATCAGGTGATCAAC
ATTGGCAGGAACGCACGAAGCATGGTCGGCAGGAAGCTAGGGATGAGCAAAGAAAACGGG
TGGAAAATAATTGGTATCTAGAGCGAGGAAATCAGCGAGAGGAAGACCGAATTTTCCATT
AGTCAAACCGTAGAGCGCGATAAGTGAGGATTTCATAGGCATCCCGCTGTAAAATTCATA
AAACTCTTTTCTATTCAATTTTTCCTTTCACCCACACTAAACATTATAATTTT

consensusID : consensus_8840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 631
fasta sequence

                              [CCGAACAATAACAAAGCGACACGTAAATGTTTCGGTATAAAAATTGAAACGCAATAGACATCGTTTTTATGAACACAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAAAGAACCGAGTGGAGTGCAAGAAGTTATAAAGCAAGAAGTGACTGTGGAGGAAGGAAAGGGCCAACCGTCTCGAAAGCAGCGTCATGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACACCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCC]

[+] EMBL BM655543             [CCGAACAATAACAAAGCGACACGTAAATGTTTCGGTATAAAAATTGAAACGCAATAGACATCGTTTTTATGAACACAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAAAGAACCGAGTGGAGTGCAAGAAGTTATAAAGCAAGAAGTGACTGTGGAGGAAGGAAAGGGCCAACCGTCTCGAAAGCAGCGTCATGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACACCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCC]




>consensus_8840#1
CCGAACAATAACAAAGCGACACGTAAATGTTTCGGTATAAAAATTGAAACGCAATAGACA
TCGTTTTTATGAACACAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATG
CAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTCAT
TTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCA
AAGAACCGAGTGGAGTGCAAGAAGTTATAAAGCAAGAAGTGACTGTGGAGGAAGGAAAGG
GCCAACCGTCTCGAAAGCAGCGTCATGACAGTCATCGCAGCACTGACTCGCAACTAGATG
AATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACACCAGCAGCTTGCCAATGGAAG
AGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTG
CTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAG
AAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTG
AGCCGGTACAATCGATGGTTGAACATTCCCC

consensusID : consensus_8840#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 630
fasta sequence

                              [CCGCTACCCCCTCTGATCCACTATTGTCCAGTTATTTTCGGCAGATTGAACTGCCCAGGTATCTTAATCCTTCTAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAGAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAATGAACCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAAGTGACTGTGGAGGAAGGAAAGGACCAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCT]

[+] EMBL BM586084             [CCGCTACCCCCTCTGATCCACTATTGTCCAGTTATTTTCGGCAGATTGAACTGCCCAGGTATCTTAATCCTTCTAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAGAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAATGAACCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAAGTGACTGTGGAGGAAGGAAAGGACCAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCT]




>consensus_8840#2
CCGCTACCCCCTCTGATCCACTATTGTCCAGTTATTTTCGGCAGATTGAACTGCCCAGGT
ATCTTAATCCTTCTAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCA
GCACATGTTGGTGCAGTTGGAAAAGTTGACACAAGAAACGATGCGCTAACGGTTTCATTT
AGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAAT
GAACCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAAGTGACTGTGGAGGAAGGAAAGGAC
CAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGCAGCACTGACTCGCAACTAGATGAA
TCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACGCCAGCAGCTTGCCAATGGAAGAG
GATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCT
GACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAA
GGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAG
CCGGTACAATCGATGGTTGAACATTCCCCT

consensusID : consensus_8840#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 620
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAAGTGACTGTGGAGGAAGGAAAGGACCAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCTGTCAGCAATGCCAACTGGATCATATTTAGCCTGATAGCCACAGGTATGGTAGCCGTTATACTTGGCAACTCAATGCGACTTCAGAATCGCGTTAATGAAATCAATTTTGAGCACGAGAAACGCATTTCGGAGCTTGAACTGGAAAAACAATATTTTGAAGAACGAGATGAACAAACTGCGTCATCTTTATACGCGCTCCGAATTAG]

[+] EMBL BM657529             [CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAAGTGACTGTGGAGGAAGGAAAGGACCAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGCAGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCTGTCAGCAATGCCAACTGGATCATATTTAGCCTGATAGCCACAGGTATGGTAGCCGTTATACTTGGCAACTCAATGCGACTTCAGAATCGCGTTAATGAAATCAATTTTGAGCACGAGAAACGCATTTCGGAGCTTGAACTGGAAAAACAATATTTTGAAGAACGAGATGAACAAACTGCGTCATCTTTATACGCGCTCCGAATTAG]




>consensus_8840#3
CCGCCCACGCGTCCGCCCACGCGTCCGCCGAGTGGAGTGCAAGAAGTTATAAAGGAAGAA
GTGACTGTGGAGGAAGGAAAGGACCAACCGTCTCGAAAGCAGCGTCACGACAGTCATCGC
AGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGTGAC
GCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCTCC
CGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCGGAT
GATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTGAAG
CATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCTGTCAGC
AATGCCAACTGGATCATATTTAGCCTGATAGCCACAGGTATGGTAGCCGTTATACTTGGC
AACTCAATGCGACTTCAGAATCGCGTTAATGAAATCAATTTTGAGCACGAGAAACGCATT
TCGGAGCTTGAACTGGAAAAACAATATTTTGAAGAACGAGATGAACAAACTGCGTCATCT
TTATACGCGCTCCGAATTAG

consensusID : consensus_8840#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 557
fasta sequence

                              [CACAGTTTCTTCATAGAAAATACGCCTACAAACTTAGGAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCATGAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCATTAAAGCAGAGGGTAGTGTTATCGTGGATGCATTGGGGAGCATTTTAGATCTATCACCCGAACCAGAGGACAGTTTAGGAGCGAAAGTTCGAAAAGTTACTCCTGAAGCTACAACGCCAGAGATACTTGATGTGAAAGCAGAATTGCTTGAGCCAGATCATCACCAGAAAT]

[+] EMBL BX609710             [CACAGTTTCTTCATAGAAAATACGCCTACAAACTTAGGAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAGCAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCATGAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCGATGCCATTAAAGCAGAGGGTAGTGTTATCGTGGATGCATTGGGGAGCATTTTAGATCTATCACCCGAACCAGAGGACAGTTTAGGAGCGAAAGTTCGAAAAGTTACTCCTGAAGCTACAACGCCAGAGATACTTGATGTGAAAGCAGAATTGCTTGAGCCAGATCATCACCAGAAAT]




>consensus_8840#4
CACAGTTTCTTCATAGAAAATACGCCTACAAACTTAGGAGTGTGACAAAGACCAGCGAAG
ATGGAAGAACCGGATCGTGATGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAA
AACGATGCGCTAACGGTTTCATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGA
AAGGAAAGCGATCGGCAGAGCAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGA
GTTTCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAAC
ATTAGAACCATCTCATGAAAAGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATAT
CGATTATCAGAAAGCATTCGATGCCATTAAAGCAGAGGGTAGTGTTATCGTGGATGCATT
GGGGAGCATTTTAGATCTATCACCCGAACCAGAGGACAGTTTAGGAGCGAAAGTTCGAAA
AGTTACTCCTGAAGCTACAACGCCAGAGATACTTGATGTGAAAGCAGAATTGCTTGAGCC
AGATCATCACCAGAAAT

consensusID : consensus_8840#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 101
fasta sequence

                              [CCGCAAATATTGTGATGTAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAAT]

[+] EMBL BM594524             [CCGCAAATATTGTGATGTAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAAT]




>consensus_8840#5
CCGCAAATATTGTGATGTAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTT
TCAACAGAAACAGCAAACTAAACAGGAAAATTATAACAAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8840#1      CCGAACAATAACAAAGC-GACACGTAAATGTTTCGGTATAAAAATTGAAACGCAATAGAC 59
consensus_8840#2      ----CCGCTACCCCCTCTGATCCACTATTGTCCAGTTATTTTCGGCAGATTGAACTGCCC 56
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ----------------------------------------CACAGTTTCTTCATAGAAAA 20
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ------------------------------------------------------------
                                                                                  

consensus_8840#1      AT-CGTTTTTATGAACACAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGA 118
consensus_8840#2      AGGTATCTTAATCCTTCTAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGA 116
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      TACGCCTACAAACTTAGGAGTGTGACAAAGACCAGCGAAGATGGAAGAACCGGATCGTGA 80
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ------------------------------------------------------------
                                                                                  

consensus_8840#1      TGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTC 178
consensus_8840#2      TGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAGAAACGATGCGCTAACGGTTTC 176
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      TGCAGCACATGTTGGTGCAGTTGGAAAAGTTGACACAAAAAACGATGCGCTAACGGTTTC 140
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ------------------------------------------------------------
                                                                                  

consensus_8840#1      ATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAG 238
consensus_8840#2      ATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAG 236
consensus_8840#3      ---------------------------------------CCGCCCACGCGTCCGCCCACG 21
consensus_8840#4      ATTTAGTTCCGAGGATTCCGACAGCTGGACTCTGCTGGGAAAGGAAAGCGATCGGCAGAG 200
consensus_8840#5      -----------------------------------------CCGCAAATATT--GTGATG 17
consensus_8840#0      ------------------------------------------------------------
                                                                                  

consensus_8840#1      CAAAGAACCG------------AGTGGAGTGCAAGA---AGTTATAAAGCAAGAAGTGA- 282
consensus_8840#2      CAATGAACCG------------AGTGGAGTGCAAGA---AGTTATAAAGGAAGAAGTGA- 280
consensus_8840#3      CG-TCCGCCG------------AGTGGAGTGCAAGA---AGTTATAAAGGAAGAAGTGA- 64
consensus_8840#4      CAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAA 260
consensus_8840#5      TAAAGAAGCGGAAGATCGAATCAAAACAGAAAAAGGCAGAGTTTCAACAGAAACAGCAAA 77
consensus_8840#0      -----------------------AGATCGCCCGAGGT-GAGTTC--ACAGAAACAGCAA- 33
                                                  *    **    ****   *   **  **  * 

consensus_8840#1      CTGTGGAGGAAGGAAAGGGCCAACCGTCTCGAA-AGCAGCGTCATGACAGTC---ATCGC 338
consensus_8840#2      CTGTGGAGGAAGGAAAGGACCAACCGTCTCGAA-AGCAGCGTCACGACAGTC---ATCGC 336
consensus_8840#3      CTGTGGAGGAAGGAAAGGACCAACCGTCTCGAA-AGCAGCGTCACGACAGTC---ATCGC 120
consensus_8840#4      CTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCATGAAA 320
consensus_8840#5      CTAAACAGGAAAATTATAACAAAT------------------------------------ 101
consensus_8840#0      CTAAACAGGAAAATTATAACAAATTTATTAATCCAGCAACATTAGAACCATCTCAAGAAA 93
                      **    *****    *   * **                                     

consensus_8840#1      AGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGT--G 396
consensus_8840#2      AGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGT--G 394
consensus_8840#3      AGCACTGACTCGCAACTAGATGAATCTTCCGATGGAATCAGCATCATCAGTGAGAGT--G 178
consensus_8840#4      AGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCG 380
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      AGCGCTCTGACCCTAGTAAACCAGCATCACCATTTAATATCGATTATCAGAAAGCATTCG 153
                                                                                  

consensus_8840#1      ACACCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCT 456
consensus_8840#2      ACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCT 454
consensus_8840#3      ACGCCAGCAGCTTGCCAATGGAAGAGGATTTGCATGATGATAGAGGTACACTTCATTTCT 238
consensus_8840#4      ATGCCATTAAA--GCAGAGGGTAGTGTTATCGTGGATGCATTGGGGAGCATTTTAGATCT 438
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ATGCCATTAAA--GCAGAGGGTAGTGTTATCGTGGATGCATTGGGGAGCATTTTAGATCT 211
                                                                                  

consensus_8840#1      CCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCG- 515
consensus_8840#2      CCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCG- 513
consensus_8840#3      CCCGAACCATCGATTTAAAGGCTGCTGACTATGAACCTTTAACGCCACCATTTACGCCG- 297
consensus_8840#4      ATCACCCGAACCAGAGGACAGTTTAGGAGCGAAAGTTCGAAAAGTTACTCCTGAAGCTAC 498
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ATCACCCGAACCAGAGGACAGTTTAGGAGCGAAAGTTCGAAAAGTTACTGCTGAAGCTAC 271
                                                                                  

consensus_8840#1      GATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTG 575
consensus_8840#2      GATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTG 573
consensus_8840#3      GATGATGTAAAAACAGTAAAAGAAGAAGGGAGCATTCAAAGGAAACGAGAAGTGCAGGTG 357
consensus_8840#4      AACGCCAGAGATACTTGATGTGAAAGCAGAATTGCTTGAGCCAGATCATCACCAGAAAT- 557
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      AACGCCAGAAATACTTGATGTGAAAGCAGAATTGCTTGAGCCAGATCATCACCAGGAATC 331
                                                                                  

consensus_8840#1      AAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCC---- 631
consensus_8840#2      AAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCT--- 630
consensus_8840#3      AAGCATGCAGATGAAAATTCAGTTGAGCCGGTACAATCGATGGTTGAACATTCCCCTGTC 417
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      CAAGGAACTGAAGCACGACGATAGGAAACAAAGAAAGTACAGGCCGGAAGAAAAGAAAAC 391
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      AGCAATGCCAACTGG--ATCATATTTAGCCTGATAGCCACAGGTATGGTAGCCGTTATAC 475
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ACATAAACCAGAGGACAACTCTCATTCTTCGGGAGAAAGTCAATATTCGAAACGTAAAGA 451
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      TTGGCAACTCAATGCGACTTCAGAATCGCGTTAATGAAATCAATTTTGAGCACGAGAAAC 535
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      CGGCAGTAATCATTCGACGCACGAAAGTCGTCATAAGAAGCAAAAGAATGGTCGTGCAGA 511
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      GCATTTCGGAGCTTGAACTGGAAAAACAATATTTTGAAGAACGAGATGAACAAACTGCGT 595
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      CAACGGTAAATATGAAAATAAGGAAAGCCAACGCGAATACGGAAGCTATGAGCAGAAAAA 571
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      CATCTTTATACGCGCTCCGAATTAG----------------------------------- 620
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      GTTCGTCGAAGATAGCAGTCATAAGAAAAGTCATAAAAAAAAGCATGACGACGATGGCAA 631
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ACATAAATATGTTCCGGAACGAAACAATGGTCGTTATTCAGATTCTTATATTTCAGCTGA 691
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      CGGTAGCGATGATGATGATGATGATGATGAGGATGATCATTACAAAAAGAAATTCGACCA 751
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      GCGTGAAACATTTAGCGATCACAATCATGACGGCAAGTCTTCTGAAACAAATCGGGCTAA 811
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      GCAAACGGAGGCACTCGACGAACGGATACAACACATTCGCGAACCAGCTGGCGAAGGTTC 871
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      GTATCTGGAGCAATACAAACGGGCAGAATCGAAAAAAGGAAAACGTCACCAGGAAGATGA 931
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      TTATTACCACGGTCAGAAGCATAATAAGCATGCGAATAAGCAGCAGCAACAGCGGAAAGA 991
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      CGGAGACTGGAACGAGAAAAGGTATAAGGGCAGAGATGAATACCGTCACAATGGCGGTAA 1051
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      ACATGGTGAAAGAGGATCAGGTGATCAACATTGGCAGGAACGCACGAAGCATGGTCGGCA 1111
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      GGAAGCTAGGGATGAGCAAAGAAAACGGGTGGAAAATAATTGGTATCTAGAGCGAGGAAA 1171
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      TCAGCGAGAGGAAGACCGAATTTTCCATTAGTCAAACCGTAGAGCGCGATAAGTGAGGAT 1231
                                                                                  

consensus_8840#1      ------------------------------------------------------------
consensus_8840#2      ------------------------------------------------------------
consensus_8840#3      ------------------------------------------------------------
consensus_8840#4      ------------------------------------------------------------
consensus_8840#5      ------------------------------------------------------------
consensus_8840#0      TTCATAGGCATCCCGCTGTAAAATTCATAAAACTCTTTTCTATTCAATTTTTCCTTTCAC 1291
                                                                                  

consensus_8840#1      ----------------------
consensus_8840#2      ----------------------
consensus_8840#3      ----------------------
consensus_8840#4      ----------------------
consensus_8840#5      ----------------------
consensus_8840#0      CCACACTAAACATTATAATTTT 1313