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Anopheles gambiae
cluster # 8890 cluster # 8890       Sequences # 12       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8890#0 length = 1491 sequences # 10  
consensus_8890#1 length = 765 sequences # 1  
consensus_8890#2 length = 172 sequences # 1  

consensusID : consensus_8890#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1491
fasta sequence
                              [CAGAATTCGGCACGAGGTGTCACATTTCTATTGTGAGGATCCCTCTTTTTATATTAATTGGAAATCCCTTTGTTTGCTCTGTTATTTGCTTAGAATGAATTATTTTGACCATCGAAATTAACACCCAATCTCACCTTGCATCCTCCCAAAGGCAAAACATCAACAGTGCAATAAAAACAACCCGTAAGTTTGTGCGTGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCC-GCCACCCGCAGTCCCC-GCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTACAAAAACCA-GGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGA-CTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCAAACTGTTCGCCAACAAGGTGCAGCTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCCCGGTAGGG-AG-CGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACG-GGAAGGAAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGTCCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGTTCGATCGGATGCAGGCTAACCGGAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACACGACGGGCGAATTGGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGATGGAAGCGGCACCGCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATGCAATGCGGGCACTCGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTTAATAACACAATCCAATTGGATGATCTTTTGTGTATGATTGTAAATATAGTAACACGTGATAAAAAAAAAAAAAAAA]

[+] EMBL BX469577             [CAGAATTCGGCACGAGGTGTCACATTTCTATTGTGAGGATCCCTCTTTTTATATTAATTGGAAATCCCTTTGTTTGCTCTGTTATTTGCTTAGAATGAATTATTTTGACCATCGAAATTAACACCCAATCTCACCTTGCATCCTCCCAAAGGCAAAACATCAACAGTGCAATAAAAACAACCCGTAAGTTTGTGCGTGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGGNCACCCGCAGTCCCCGGNCAAAAATGTCCGACACTGAGGAACCGGGCTCCCGCTTCATTGACCAGTACAAAAACCAGGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGANCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGAGCTCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS09FJ0             [                                                                                                                                                                          ATAAAAACAACCCGTAAGTTTGTGCGTGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCC GCCACCCGCAGTCCCC GCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTACAAAAACCA GGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGA CTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCAAACTGTTCGCCAACAAGGTGCAGCTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCCCGGTAGGG AGTCGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACG GGAAGGAAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCGGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGTCCGTTACACCGGAAA                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CNS08T8F             [                                                                                                                                                                      ctccccAAAAACAACCCGTAAGTTTGTGCGTGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCC GCCACCCGCAGTCCCC GCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTACAAAAACCA GGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGA CTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCAAACTGCTCGCCAACAAGGTGCAGCTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTG CCGGTA GG AGCCGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTTCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX620389             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AAACGGCCCCGACACGCGCCAAAAAACGGGTGCGCATCATCACCTCCAAACTGTTCGCCAACAAGGTGCAGCTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTAGTTCGGCCGTGCCCGGTAGGGCAG CGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGGGCTCGCGGAACTGCTCGACAAGAAGACGGCGAACG GGAAGGAAGGGTTCCGGTTAGGCTTACTCCCATCGTACGATCTGGCCGATCCGACGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CNS08GRT             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCACCTCCAAACTGTTCGCCAACAAGGTGCAGCTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCCCGGTAGGGCAG CGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACATTTAACATACTTGACGAACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGAGCTGGCGGAACTGCTCGACAAGAAGACAGCGAACG GGAAGGAAGGGTTTCGGTTAGCCAAACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCAAACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGTTCTACAACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGTCCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGATCGATCGGATGCAGGCTAACCGGAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACACAACGGGCGAATTGGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGATGGAAGCGGCACCGCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATGCAATGCGGGCACTCGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTT                                                                            ]
[-] EMBL CNS096V4             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCCCGGTAGGGCAG CGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGTGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACG GGAAGGAAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTAATAATGC                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CNS096V3             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCCCGGTAGGG AGACGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCGCGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACG GGAAGGAAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCGGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGTCCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGTTC                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CNS08GRS             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CGCGGCCGCTCGATTGCTTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTTCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTTTTAGTTCCGGTTCGCCTGGTTCGAGTCGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACGCGGAAGGAAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGT CCCGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCTTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGC                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CNS09FJ1             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GGAAGGGTTTCGGTTAGCCAAACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCAAACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGTTCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGTCCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGTTCGATCGGATGCAGGCTAACCGGAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACACGACGGGCGAATTGGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGATGGAAGCGGCACCGCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATGCAATGCGGGCACTCGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTTAATAACACAATCCAATTGGATGATCTTTTGTGTATGATTGTAAATATAGTAACACGTGATAAAAAAAAAAAAAAAA]
[-] EMBL CNS08T8G             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CACCGGAAACTATGC GCGTACATTGAAGAGTTCGATCGGATGCAGGCTAACCGGAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACACGACGGGCGAATTGGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGATGGAAGCGGCACCGCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATGCAATGCGGGCACTCGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTTAATAACACAATCCAATTGGATGATCTTTTGTGTATGATTGTAAATATAGTAACACGTGAcgggaa           ]


>consensus_8890#0 CAGAATTCGGCACGAGGTGTCACATTTCTATTGTGAGGATCCCTCTTTTTATATTAATTG GAAATCCCTTTGTTTGCTCTGTTATTTGCTTAGAATGAATTATTTTGACCATCGAAATTA ACACCCAATCTCACCTTGCATCCTCCCAAAGGCAAAACATCAACAGTGCAATAAAAACAA CCCGTAAGTTTGTGCGTGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGCCACCCG CAGTCCCCGCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTAC AAAAACCAGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAA AAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGAC TCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCCCCGA CACGCGCCAAGAAACGGGTGCGCATCATCACCTCCAAACTGTTCGCCAACAAGGTGCAGC TGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAGCTGGCTGGTTCGGCCGTGCC CGGTAGGGAGCGCTGCCTGCTAGTCTTCCGGCAGCGGATCGCGATCGCGTTCAGCAAGCG CGGCCGCTCGATTGCGTCCGTCCGCACCAAGCTGAACCTGCGCGATGCGATCGTGCTCGA CTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGTGCTGGCCCAGGT AGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGCCTGGATCGAGTCGAAGTACCACGA GAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACGGGAAGGAAGGGTTTCGGTT AGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGCGCTGCTGGTCACA CTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGTTCTACCACAAACA GTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTGCGTTCATGCTGCA GGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGGCGGACAAACCGGT CCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGTTCGATCGGATGCAGGCTAACCG GAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACACGACGGGCGAATT GGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGATGGAAGCGGCACC GCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATGCAATGCGGGCACT CGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTTAATAACACAATCCAATTGGATGATC TTTTGTGTATGATTGTAAATATAGTAACACGTGATAAAAAAAAAAAAAAAA



consensusID : consensus_8890#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [AGGCAAGAATCGGCACGAGNTACACCCGTAAGTTTGTGCGTCGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGCCACCCGCAGTCCCCGCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTACAAAAACCAGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGAGCTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCGCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCGAAACTGTTCGCCAACAAGGTGCAGACTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAAGCTGGCTGGTTCGGCCGTGCCCGGATAGGGACAGCGCTGCCTGCGTAGTCTTCCGGCAGCGGATCGCGGGAAGTCGGCGGGTGTCAGGCAAAGCGCGGGGCAGGAGTACGAGTATGCGGTCCGGGTGCCGGGACCGAACGNCTGGAAAGCCATGGNGCGGAATGCGGAATCAGGTGCTCGGAGCGTTGCAATTCCTTTGGCCAAAGGGAAATCGGGAACCTATNGTANCAATTAACATTGAAACAGGCCANCNTAGGGGTAGCAGTGGGGACCCAAGCGGGTAGGAACGCGTAGGGNTCACGAAGGCGTGGCAGAANGGTTCGTCCAGGATCNCCG]

[+] EMBL BX468452             [AGGCAAGAATCGGCACGAGNTACACCCGTAAGTTTGTGCGTCGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGCCACCCGCAGTCCCCGCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTACAAAAACCAGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGAGCTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCGCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCGAAACTGTTCGCCAACAAGGTGCAGACTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAAGCTGGCTGGTTCGGCCGTGCCCGGATAGGGACAGCGCTGCCTGCGTAGTCTTCCGGCAGCGGATCGCGGGAAGTCGGCGGGTGTCAGGCAAAGCGCGGGGCAGGAGTACGAGTATGCGGTCCGGGTGCCGGGACCGAACGNCTGGAAAGCCATGGNGCGGAATGCGGAATCAGGTGCTCGGAGCGTTGCAATTCCTTTGGCCAAAGGGAAATCGGGAACCTATNGTANCAATTAACATTGAAACAGGCCANCNTAGGGGTAGCAGTGGGGACCCAAGCGGGTAGGAACGCGTAGGGNTCACGAAGGCGTGGCAGAANGGTTCGTCCAGGATCNCCG]


>consensus_8890#1 AGGCAAGAATCGGCACGAGNTACACCCGTAAGTTTGTGCGTCGTTTTTTTCGTGTCGTGA ATTTCGTTCCTCCACCCGCCACCCGCAGTCCCCGCCAAAAATGTCCGACACTGAGGAACC GGCCTCCCGCTTCATTGACCAGTACAAAAACCAGGGCCGAACGGATGCCATCCTACAAGC GGAACGGAGGCAGCGGCTGCTCGAAAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGC CGGTCGGCCCGGTTTACTCGAAGAGCTCGCCGCGGAACCGGAACCACCATCCGGCGACGA TTCGATGGAATGCCAATCGGCGCCCGACACGCGCCAAGAAACGGGTGCGCATCATCACCT CCGAAACTGTTCGCCAACAAGGTGCAGACTGTCCGAGTGGATGCACGAACGGCCGGACGA TCTCGACAAGCTGGCTGGTTCGGCCGTGCCCGGATAGGGACAGCGCTGCCTGCGTAGTCT TCCGGCAGCGGATCGCGGGAAGTCGGCGGGTGTCAGGCAAAGCGCGGGGCAGGAGTACGA GTATGCGGTCCGGGTGCCGGGACCGAACGNCTGGAAAGCCATGGNGCGGAATGCGGAATC AGGTGCTCGGAGCGTTGCAATTCCTTTGGCCAAAGGGAAATCGGGAACCTATNGTANCAA TTAACATTGAAACAGGCCANCNTAGGGGTAGCAGTGGGGACCCAAGCGGGTAGGAACGCG TAGGGNTCACGAAGGCGTGGCAGAANGGTTCGTCCAGGATCNCCG



consensusID : consensus_8890#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 172
fasta sequence
                              [GAACCGGCCTCCCGCTTCATGGACCAAGACAAAAACCAGGGCCGAACGGAGGCCACCCAACAGGCGGAACGGAGGCAGCGGCGGCCCGAAAAGCAGAAGCGCTCCCGCGACCGGGAGCGGGAGGCCGGCCGGCCCGGTTAACACGAAGAGCTCGCCGCGGAACCGGAACCAC]

[+] EMBL BX613804             [GAACCGGCCTCCCGCTTCATGGACCAAGACAAAAACCAGGGCCGAACGGAGGCCACCCAACAGGCGGAACGGAGGCAGCGGCGGCCCGAAAAGCAGAAGCGCTCCCGCGACCGGGAGCGGGAGGCCGGCCGGCCCGGTTAACACGAAGAGCTCGCCGCGGAACCGGAACCAC]


>consensus_8890#2 GAACCGGCCTCCCGCTTCATGGACCAAGACAAAAACCAGGGCCGAACGGAGGCCACCCAA CAGGCGGAACGGAGGCAGCGGCGGCCCGAAAAGCAGAAGCGCTCCCGCGACCGGGAGCGG GAGGCCGGCCGGCCCGGTTAACACGAAGAGCTCGCCGCGGAACCGGAACCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CAGAATTCGGCACGAGGTGTCACATTTCTATTGTGAGGATCCCTCTTTTTATATTAATTG 60
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      GAAATCCCTTTGTTTGCTCTGTTATTTGCTTAGAATGAATTATTTTGACCATCGAAATTA 120
                                                                                  

consensus_8890#1      -----------------------------AGGCAAGA-ATCGGCA------CGAGNTACA 24
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      ACACCCAATCTCACCTTGCATCCTCCCAAAGGCAAAACATCAACAGTGCAATAAAAACAA 180
                                                                                  

consensus_8890#1      CCCGTAAGTTTGTGCGTCGTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGCCACCC 84
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CCCGTAAGTTTGTGCGT-GTTTTTTTCGTGTCGTGAATTTCGTTCCTCCACCCGCCACCC 239
                                                                                  

consensus_8890#1      GCAGTCCCCGCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTA 144
consensus_8890#2      -------------------------------GAACCGGCCTCCCGCTTCATGGACCAAGA 29
consensus_8890#0      GCAGTCCCCGCCAAAAATGTCCGACACTGAGGAACCGGCCTCCCGCTTCATTGACCAGTA 299
                                                     ******************** *****  *

consensus_8890#1      CAAAAACCAGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGA 204
consensus_8890#2      CAAAAACCAGGGCCGAACGGAGGCCACCCAACAGGCGGAACGGAGGCAGCGGCGGCCCGA 89
consensus_8890#0      CAAAAACCAGGGCCGAACGGATGCCATCCTACAAGCGGAACGGAGGCAGCGGCTGCTCGA 359
                      ********************* **** ** *** ******************* ** ***

consensus_8890#1      AAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGA 264
consensus_8890#2      AAAGCAGAAGCGCTCCCGCGACCGGGAGCGGGAGGCCGGCCGGCCCGGTTAACACGAAGA 149
consensus_8890#0      AAAGCAGAAGCGTTCCCGCGACCTGGAGCTGGATGCCGGTCGGCCCGGTTTACTCGAAGA 419
                      ************ ********** ***** *** ***** ********** ** ******

consensus_8890#1      GCTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGCGCC 324
consensus_8890#2      GCTCGCCGCGGAACCGGAACCAC------------------------------------- 172
consensus_8890#0      -CTCGCCGCGGAACCGGAACCACCATCCGGCGACGATTCGATGGAATGCCAATCGGC-CC 477
                       **********************                                     

consensus_8890#1      CGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCCGAAACTGTTCGCCAACAAGGTG 384
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGACACGCGCCAAGAAACGGGTGCGCATCATCACCTCC-AAACTGTTCGCCAACAAGGTG 536
                                                                                  

consensus_8890#1      CAGACTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACAAGCTGGCTGGTTCGGC 444
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CAG-CTGTCCGAGTGGATGCACGAACGGCCGGACGATCTCGACA-GCTGGCTGGTTCGGC 594
                                                                                  

consensus_8890#1      CGTGCCCGGATAGGGACAGCGCTGCCTGCGTAGTCTTCCGGCAGCGGATCGCGG--GAAG 502
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGTGCCCGG-TAGGGA--GCGCTGCCTGC-TAGTCTTCCGGCAGCGGATCGCGATCGCGT 650
                                                                                  

consensus_8890#1      TCGGCGGGTGT--CAGGCAAAGCGCGGGGCAGGAGTACGAGTATGCGGTCCGGGTGCCGG 560
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      TCAGCAAGCGCGGCCGCTCGATTGCGTC-CGTCCGCACCAAGCTG-AACCTGCGCGATGC 708
                                                                                  

consensus_8890#1      GACCGAACGNCTGGAAAGCCATGGNGCGGAATGCGGAATC-AGGTGCTCGGAGCGTTGCA 619
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      GATCGTGCTCGACTGCATCCTTGCCAAGGATCGCACCTTTTACATACTTGACGCACTGGT 768
                                                                                  

consensus_8890#1      ATTCCTTTGGCCAAAG--GGAAATCGGGAACCTATNGTANCAATTAACATTGAAACAGGC 677
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      GCTGGCCCAGGTAGAGCTGGTCAGCTGCGAGTGTCAGTTCCGGTTCGC-CTGGATCGAGT 827
                                                                                  

consensus_8890#1      CANCNTAGGGGTAGCAGTGGGGACCCAAGCGGGTAGGAACGCGTAGGGNTCACGAAGGCG 737
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGAAGTACCACGAGAACGGGCTGGCGGAACTGCTCGACAAGAAGACGGCGAACGGGAAGG 887
                                                                                  

consensus_8890#1      TGGCAGAANGGTTCGTC-CAGGATCNCCG------------------------------- 765
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      AAGGGTTTCGGTTAGCCATACTGCCATCGTACGATCTGGCCGATCCGGCGGCGATGGAGC 947
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      GCTGCTGGTCACACTATCCCGCCTTCCCGGACGATAGTCCCCGGCTCGACGGCTACCTGT 1007
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      TCTACCACAAACAGTCCCAGTACGTGTACGGCAAGACACCGCTCGTTGTGTGGCTGTTTG 1067
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGTTCATGCTGCAGGATGTACTGCGGCTACCCTCGGGGGTGGTCAACGGTCGGCACCTGG 1127
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGGACAAACCGGTCCGTTACACCGGAAACTATGCGGCGTACATTGAAGAGTTCGATCGGA 1187
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      TGCAGGCTAACCGGAGGCGAAAGCCGCGCAACAAGGGGATGAAACCACAGCAGATGGACA 1247
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CGACGGGCGAATTGGGGGGCCAGGATGATGTGACGCCGGACGCAACGCTGTGGGAGGCGA 1307
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      TGGAAGCGGCACCGCTCGATTCGGATGATGACGATTTGTGCCCCACCCGGGAGGAGGATG 1367
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CAATGCGGGCACTCGAAATGGAGTAGAGGACGTAGAGTGGCCTAATTTAATAACACAATC 1427
                                                                                  

consensus_8890#1      ------------------------------------------------------------
consensus_8890#2      ------------------------------------------------------------
consensus_8890#0      CAATTGGATGATCTTTTGTGTATGATTGTAAATATAGTAACACGTGATAAAAAAAAAAAA 1487
                                                                                  

consensus_8890#1      ----
consensus_8890#2      ----
consensus_8890#0      AAAA 1491
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)