These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8902#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 467 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC] [+] EMBL BM607996 [CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCT ] [+] EMBL BM624919 [ ccgATAGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC] [+] EMBL BM640781 [ ccgGAGTGAGTGGCGAATGTTTTTAGCTGAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTTCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGATGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCA ACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGt ] consensusID : consensus_8902#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 384 fasta sequence [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT] [+] EMBL BM639448 [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT] [+] EMBL BM620762 [CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT] [+] EMBL BM596584 [ ccgGAAAAACACGATTACGTGAATAGAAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAA ] [+] EMBL BM593566 [ ccgaACCGATACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT] [+] EMBL BX614990 [ AGCCGTGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGg ] consensusID : consensus_8902#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 382 fasta sequence [CCGCCCACGCGTCCGCATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT-AAATGTGTTTACTGATGT] [+] EMBL BM640620 [CCGCCCACGCGTCCGCATCCTTCCAATTCCCACCAGAACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT AAATGTGTTTACTGATGT] [+] EMBL BM632087 [ ccGGCAGCGTCTTCTCAGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGTGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAAT AAATGTGTTTACTGATGT] [+] EMBL BX609024 [ AGGCTAGCCGCGGCCTGACGGCACTCTTCAAGCGCGGGTGGAACGAAATCCCCGAGGTGGTCGGCTCGTCAGTGATCGCTCTAATCGGAATCGGGCTCAGCGTGGTGGGACTGACCAACTACTACCGCAAGGACGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGCGGCGCGCATCCGCCAGGATTAGAACTGCAAACCAAACCAACCAACCAACACACACACA AAGCCATCCATCGGCTCGGTTAGATCTAAATAAAATGTGT ] consensusID : consensus_8902#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [CACAGCAGCCGGCACCACAGCAGCCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGACAGTGCCTTCGCCGACAACGGTAAGCGCTGGGGCGGCGGCCCACCAACCGGACCGTACCTACCCCGCTGGTCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT] [+] EMBL BM653502 [CACAGCAGCCGGCACCACAGCAGCCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGACAGTGCCTTCGCCGACAACGGTAAGCGCTGGGGCGGCGGCCCACCAACCGGACCGTACCTACCCCGCTGGTCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACATGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8902#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGTGAATAGAGTGAGTGGCGAATGTTTTTAGCT 60 consensus_8902#2 ------------------------------------------------------------ consensus_8902#1 ------------------------------------------------------------ consensus_8902#3 ------------------------------------------------------------ consensus_8902#0 GAAAATTGGGTGCAAAAATAGGCATTTCTGAATTCAACATCCTTCCAATTCCC--ACCAG 118 consensus_8902#2 ---------------------CCGCCCACGCGTCCG-CATCCTTCCAATTCCC--ACCAG 36 consensus_8902#1 ------------------CCGGAAATATCGAGCAAAGAAAAACACGATTACGTGAATAGA 42 consensus_8902#3 ------------------------------------------------------------ consensus_8902#0 AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 178 consensus_8902#2 AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 96 consensus_8902#1 AACGGCTCGTTTTCCACCGGAACGCAACAATGGCAGCGTCTTCTCAGGCTAGCCGCGGCC 102 consensus_8902#3 ------------------------------------------------------------ consensus_8902#0 TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 238 consensus_8902#2 TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 156 consensus_8902#1 TGACGGCACTCTTCAAGCGCGGGTGGAACGAAATTCCCGAGGTGGTCGGCTCGTCAGTGA 162 consensus_8902#3 -------------------------------------CACAGCAGCCGGCACCACAGCAG 23 * * * **** * *** consensus_8902#0 TCGCTCTAATCGGAATCGGGC-TCAGTGTGGTGG-GACTGACCAACTACTACCGCAAGGA 296 consensus_8902#2 TCGCTCTAATCGGAATCGGGC-TCAGTGTGGTGG-GACTGACCAACTACTACCGCAAGGA 214 consensus_8902#1 TCGCTCTAATCGGAATCGGGC-TCAGCGTGGTGG-GACTGACCAACTACTACCGCAAGGA 220 consensus_8902#3 CCAGAGCAATGACGACGCGTCATCAGTATTAAACCGGTCGTCCGAGGACGACTCGAACGA 83 * *** * * * **** * * * ** * ** ** ** ** consensus_8902#0 CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 356 consensus_8902#2 CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 274 consensus_8902#1 CGCTGATAACCGCCGGTACAAGCTGACGTACGTTGTGATGCGTCCGGATGATCCCCGAGC 280 consensus_8902#3 CAGTGCCT-TCGCCGACAACGGTAAGCGC------TGGGGCGGCGGCCCACCAACCGGAC 136 * ** ***** * * ** ** *** * * *** * consensus_8902#0 GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACA 416 consensus_8902#2 GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACACACACA 334 consensus_8902#1 GGCGCGCATCCGCCAGGATTAGAACCGCAAACCAACCCAACCAACCAACACACAC----A 336 consensus_8902#3 CGTACCTACCCCGCTGG-TCTTAGTGGCAAACCAACCCAACCAACCAACACACACACACA 195 * * * ** * ** * * ***************************** * consensus_8902#0 TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGCTGC 467 consensus_8902#2 TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT--- 382 consensus_8902#1 TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACTGATGT--- 384 consensus_8902#3 TGCCATCCATCGGCTCGGTTAGATCTAAATAAATGTGTTTACT-------- 238 ******************************************* |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||