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Anopheles gambiae
cluster # 8918 cluster # 8918       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8918#0 length = 880 sequences # 9  
consensus_8918#1 length = 786 sequences # 1  
consensus_8918#2 length = 615 sequences # 2  
consensus_8918#3 length = 375 sequences # 1  

consensusID : consensus_8918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 880
fasta sequence
                              [CCGCCCACGCGTCCGACCATTCAGTAATGGTCAAACCGTGCATCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA-TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGAT-GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT-CGGTAATGCGAGTGAAAAATAT-CGGCTCAAATCACTTGGTCTACACACA-GGCATAGT-GGGTGATTCGTTTAGCAGCCAGTTGAACTGTAACTTCACTACTTTTGACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAAAGTGGCGGGTGGCACTCCAACTGCTATCAAAGCAACCTGAACGGTATATACATGAAGGGTGGAAAGCAGGATTCAAATAAAGGAATACACTGGTATTACTTACC]

[+] EMBL BM630603             [CCGCCCACGCGTCCGACCATTCAGTAATGGTCAAACCGTGCATCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATT                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM645669             [                                   CCGTGCATCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT CGGTAATGCGAGTGAAAAATAT CGGCTCAAATCACTTGGTCTACACACAGGGCATAGTGGGGTGATTCGTTTAGCAGCCAGTTGAACTGTAACTTCACTACTTT                                                                                                                                                ]
[+] EMBL BM594830             [                                  ccgGTGCATCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGATTTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAG                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM613313             [                                        ccgCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAA                                                                                                                                                                                                                                                                           ]
[+] EMBL BM656536             [                                          cCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT CGGTAATGCGAGTGAAAAATAT CGGCTCAAATCACTTGGTCTACACACA GGCATAGT GGGTGATTCGTTTAGCAGCCAG                                                                                                                                                                       ]
[+] EMBL BM616379             [                                                ccGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT CGGTAATGCGAGTGAAAAATAT CGGCTCAAATCACTTGGCCTACACACA GGCATAGT GGGTGATTCGTTTAGCAGCCAGTTGAACTGTAACTTCAC                                                                                                                                                      ]
[+] EMBL BX620918             [                                                                                     AAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACNGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACCGCTTTCGCGAAATACGACAACTTTATGATCCGGTAATGCGAGTGAAAAATATCCGGCTCAAATCACT                                                                                                                                                                                                                    ]
[+] EMBL BM577943             [                                                                                                                                                                                                  ccgcggaCGC GTGGG  GCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGATCAGGAACGTCTGAAACAGGA AATTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGCTTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAATTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT CGGTAATGCGAGTGAAAAATAT CGGCTCAAATCGCTTGGCCTACACACA GGCATAGT GGGTGATTCGTTTAGCAGCCAGTTGAACTGTAACTTCACTACTTTTGACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAAAGTGGCGGGTGGCACTCCAACTGCTATCAAAGCAACCTGAACGGTATATACATGAAGGGTGGAAAGCAGGATTCAAATAAAGGAATACACTGGTATTACTTACC]
[+] EMBL BX601923             [                                                                                                                                                                                                                                                                CAGCGTGAAGCAAACTCAACTCGAGCAAAAACGTCTGAAACAGGA TTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGTCATGAGTTGCTCATAGTGAT GGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGAT CGGTAATGCGAGTGAAAAATAT CGGCTCAAATCACTTGGTCTACACACA GGCATAGT GGATGATTCGTTTAGCAGCCAGTTGAACTGTAACTTCACTACTTTTGACCAAGATACTACTACCTTATGTGCTGCAACTTTTAAAAGTGGCTGGTGGCACTCCAACTGCTATCAAAGCAACCTGAACGGTATATACATGAAAGGTGGAAAGC                                     ]


>consensus_8918#0 CCGCCCACGCGTCCGACCATTCAGTAATGGTCAAACCGTGCATCGCAACGGACCGAGTTA ATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAG TTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGAT TTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAAC TGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGG ATTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGAT TTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCA ATTGGACCGTCTTCCAGAGAAGATTTGATGGTACGGTTGATTTCAATCGCAACTGGACGG ATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCA AGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTG TAACGGCTTTCGCGAAATACGACAACTTTATGATCGGTAATGCGAGTGAAAAATATCGGC TCAAATCACTTGGTCTACACACAGGCATAGTGGGTGATTCGTTTAGCAGCCAGTTGAACT GTAACTTCACTACTTTTGACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAAAGTG GCGGGTGGCACTCCAACTGCTATCAAAGCAACCTGAACGGTATATACATGAAGGGTGGAA AGCAGGATTCAAATAAAGGAATACACTGGTATTACTTACC



consensusID : consensus_8918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 786
fasta sequence
                              [GCAGAATCGCGCACGAGNCGAGCAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGATCGGTAATGCGAGTGAAAAATATCGGCTCAAATCACTTGGTCTACACACAGGCATAGTGGGTGATTCGTTTAGCATCCAGTTGAACTGTAACTTCAGCTACTTTTGACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAACAGTGGCGGGTGGCCACTCCAACTGCTATCAANAGCAACCTGAACGGGTATATACNTGAAGGGTGGGAAAGCAGGGATTCCAAATAAAGGAAATACACTTGGTNATTACCTTTCCCGGAAGGCTTCATCGTTATTCCACTCTGGAAAGGCTAACCCAAACAGTCGATTGCATACGGGGCCGGTCATAAATCACCCGACGCTGAACAAAGAGTTAAGTTGNAGCCTGATTAACNTGCAGAGATCTGAACTGAAGTGAACACTCCGGAACG]

[+] EMBL BX468828             [GCAGAATCGCGCACGAGNCGAGCAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCACATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGAAGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGTAATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGATCGGTAATGCGAGTGAAAAATATCGGCTCAAATCACTTGGTCTACACACAGGCATAGTGGGTGATTCGTTTAGCATCCAGTTGAACTGTAACTTCAGCTACTTTTGACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAACAGTGGCGGGTGGCCACTCCAACTGCTATCAANAGCAACCTGAACGGGTATATACNTGAAGGGTGGGAAAGCAGGGATTCCAAATAAAGGAAATACACTTGGTNATTACCTTTCCCGGAAGGCTTCATCGTTATTCCACTCTGGAAAGGCTAACCCAAACAGTCGATTGCATACGGGGCCGGTCATAAATCACCCGACGCTGAACAAAGAGTTAAGTTGNAGCCTGATTAACNTGCAGAGATCTGAACTGAAGTGAACACTCCGGAACG]


>consensus_8918#1 GCAGAATCGCGCACGAGNCGAGCAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCA CATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAA GTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGA AGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGT AATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAA CGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATAC GACAACTTTATGATCGGTAATGCGAGTGAAAAATATCGGCTCAAATCACTTGGTCTACAC ACAGGCATAGTGGGTGATTCGTTTAGCATCCAGTTGAACTGTAACTTCAGCTACTTTTGA CCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAACAGTGGCGGGTGGCCACTCCAAC TGCTATCAANAGCAACCTGAACGGGTATATACNTGAAGGGTGGGAAAGCAGGGATTCCAA ATAAAGGAAATACACTTGGTNATTACCTTTCCCGGAAGGCTTCATCGTTATTCCACTCTG GAAAGGCTAACCCAAACAGTCGATTGCATACGGGGCCGGTCATAAATCACCCGACGCTGA ACAAAGAGTTAAGTTGNAGCCTGATTAACNTGCAGAGATCTGAACTGAAGTGAACACTCC GGAACG



consensusID : consensus_8918#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 615
fasta sequence
                              [GCAGAATCGCCGA-GGGTC--AACGTGCATCGCAACGGA-CGAGTT-ATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCACATCAAAGACTCTGGAGTATATTTTGGTGCAACTTTATCCGATTTTTCCAACGAATCG-TTGAAGGTGTTTCGCGATGGGTCCAACAAGCATGGCTACGGTAGCAATTGGACCGTCTTCCAGACGAACGATTTCGATGGTACGGTTGATTTCAACTCGCCAACTGGGACGGATTACAAAAAACGGGATTTCGGTAATTTCATGGGCGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTAACGGCTTTCGCGAAATAC]

[+] EMBL AL696488             [GCAGAATCGCCGA GGGTC  AACGTGCATCGCAACGGA CGAGTT ATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCACATCAAAGACTCTGGAGTATATTTTGGTGCAACTTTATCCGATTTTTCCAACGAATCG TTGAAGGTGTTTCGCGATGGGTCCAACAAGCATGGCTACGGTAGCAATTGGACCGTCTTCCAGACGAACGATTTCGATGGTACGGTTGATTTCAACTCGCCAACTGGGACGGATTACAAAAAACGGGATTTCGGTAATTTCATGGGCGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTAACGGCTTTCGCGAAATAC]
[+] EMBL BM602574             [      cCGCCCACGCGTCCGACCGTGCATCGCAACGGACCGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTCTGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGCAATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCAGCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCACATC AAGACTCTGGAGTATA TTTGGTGCAAC TTATCCGA TTTTCCAACGAATCGTTTGAA GTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGA GAA GATTT GATGGTACGGTTGATTTCAA TCG CAACT GGACGGATTAC AAAAAC GGA TTCGGTAATTT ATGGG GTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAG                                       ]


>consensus_8918#2 GCAGAATCGCCGAGGGTCAACGTGCATCGCAACGGACGAGTTATTTCGCTCGGTAAAATT GTGCAGCAAGTTACACGATGAAATCAATAAACATAATAAAAGTTGCAGTTATCTGTGCTC TGTGTATATCGCAACTGGAAGCAGCCACGACATTATCAGGATTTGGATTTGAGCTATTGC AATCGCAGTTGGTAGCATTTGAGTCACGTATGCAAACACAACTGGAACAACTGCAACTCA GCGTGAAGCAAACTCAACTCGAGCAAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCG CACATCAAAGACTCTGGAGTATATTTTGGTGCAACTTTATCCGATTTTTCCAACGAATCG TTGAAGGTGTTTCGCGATGGGTCCAACAAGCATGGCTACGGTAGCAATTGGACCGTCTTC CAGACGAACGATTTCGATGGTACGGTTGATTTCAACTCGCCAACTGGGACGGATTACAAA AAACGGGATTTCGGTAATTTCATGGGCGTGAACATTGGTTAGGCCTCGAGAAACTCAAGA AAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTAACG GCTTTCGCGAAATAC



consensusID : consensus_8918#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 375
fasta sequence
                              [TTAAAGATAATANCAGTTNGACGGGGTACTCTGTGCTCTGTGTATATANTCGAGCTGGAAGCAGCCACGACATNATCAGGATTATGGAGTTGGAGCTATTGGCACCGCGANTNGGGTAACATTANGAGTCACGGTATGNCAAACAGCAAACTGGGAAAACAACTGNAGACTCAGCGTGAAGCAAACTCGAACTCGAGCTAAGAACGTCTGAAACAGGATTCCTTCTCAACAAACTCGCACATCAAGACTCTGGAGTATATTTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCACTGGCCTACNGTAGCAATTGGACCGTCTTCCAGAGAAGATNTGATGGTA]

[+] EMBL AL933308             [TTAAAGATAATANCAGTTNGACGGGGTACTCTGTGCTCTGTGTATATANTCGAGCTGGAAGCAGCCACGACATNATCAGGATTATGGAGTTGGAGCTATTGGCACCGCGANTNGGGTAACATTANGAGTCACGGTATGNCAAACAGCAAACTGGGAAAACAACTGNAGACTCAGCGTGAAGCAAACTCGAACTCGAGCTAAGAACGTCTGAAACAGGATTCCTTCTCAACAAACTCGCACATCAAGACTCTGGAGTATATTTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCACTGGCCTACNGTAGCAATTGGACCGTCTTCCAGAGAAGATNTGATGGTA]


>consensus_8918#3 TTAAAGATAATANCAGTTNGACGGGGTACTCTGTGCTCTGTGTATATANTCGAGCTGGAA GCAGCCACGACATNATCAGGATTATGGAGTTGGAGCTATTGGCACCGCGANTNGGGTAAC ATTANGAGTCACGGTATGNCAAACAGCAAACTGGGAAAACAACTGNAGACTCAGCGTGAA GCAAACTCGAACTCGAGCTAAGAACGTCTGAAACAGGATTCCTTCTCAACAAACTCGCAC ATCAAGACTCTGGAGTATATTTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAA GTGTTTCGCGATGGGTCCAACAACCACTGGCCTACNGTAGCAATTGGACCGTCTTCCAGA GAAGATNTGATGGTA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8918#2      ------------------------------------------------------------
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      ------------------------------------------------------------
consensus_8918#1      GCAGAATCGCGCACGAGNCGAGCAGAACGTCTGAAACAGGATTTTTTTCAAAAACTCGCA 60
                                                                                  

consensus_8918#2      ---------------------GCAGAATCGCCGAGGGTCAA--CGTGCATCGCAACGGAC 37
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      -------CCGCCCACGCGTCCGACCATTCAGTAATGGTCAAACCGTGCATCGCAACGGAC 53
consensus_8918#1      CATCAAGACTCTGGAGTATATTTGGTGCAACTTATCCGATTTTCCAACGAATCGTTTGAA 120
                                                                                  

consensus_8918#2      GAGTT--ATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATA 95
consensus_8918#3      ---------------------------------------------------TTAAAGATA 9
consensus_8918#0      CGAGTTAATTTCGCTCGGTAAAATTGTGCAGCAAGTTACACGATGAAATCAATAAACATA 113
consensus_8918#1      GTGTTTCGCGATGGGTCCAACAACCATGGCTACGGTAGCAATTGGACCGTCTTCCAGAGA 180
                                                                          *  * * *

consensus_8918#2      ATAAAAGTTGCA----GTTATCTGTGCT----CTGTGTATATCGC--AACTGGAAGCAGC 145
consensus_8918#3      ATANCAGTTNGACGGGGTACTCTGTGCT----CTGTGTATATANTCGAGCTGGAAGCAGC 65
consensus_8918#0      ATAAAAGTTGCA----GTTATCTGTGCT----CTGTGTATATCGC--AACTGGAAGCAGC 163
consensus_8918#1      AGATTTGATGGCACGGTTGATTTCAATCGCAACTGGACGGATTACAAAAACGGATTCGGT 240
                      * *   * *        *  * *         ***     **     *   ***  * * 

consensus_8918#2      CACG-ACATTATCAGGATT---TGGA-TTTGAGCTATT---GCAATCGCAGTTGG--TAG 195
consensus_8918#3      CACG-ACATNATCAGGATTA--TGGAGTTGGAGCTATT---GGCACCGCGANTNGGGTAA 119
consensus_8918#0      CACG-ACATTATCAGGATT---TGGA-TTTGAGCTATT---GCAATCGCAGTTGG--TAG 213
consensus_8918#1      AATTTATGGGGTGAACATTGGTTAGGCCTCGAGAAACTCAAGAAAATACTGGACACAGAA 300
                       *   *     * *  ***   * *   * ***  * *   *  *   *         * 

consensus_8918#2      CATT-TGAGTCACG-TATGC-AAACAC--AACTGG---AACAACTGCA-ACTCAGCGTGA 246
consensus_8918#3      CATTANGAGTCACGGTATGNCAAACAGCAAACTGGGAAAACAACTGNAGACTCAGCGTGA 179
consensus_8918#0      CATT-TGAGTCACG-TATGC-AAACAC--AACTGG---AACAACTGCA-ACTCAGCGTGA 264
consensus_8918#1      CGCCATGAGTTGCTCATAGTGATGGAAGACTTTGAAGGTGTAACGGCTTTCGCGAAATAC 360
                      *     ****  *     *  *   *      **       *** *    * *    *  

consensus_8918#2      AGCAAACTC---------AACTCGAGC-AAGAACGTCTGAAACAGGATTT-TTTTCAA-A 294
consensus_8918#3      AGCAAACTCG--------AACTCGAGCTAAGAACGTCTGAAACAGGATTCCTTCTCAACA 231
consensus_8918#0      AGCAAACTC---------AACTCGAGC-AAGAACGTCTGAAACAGGATTT-TTTTCAA-A 312
consensus_8918#1      GACAACTTTATGATCGGTAATGCGAGTGAAAAATATC-GGCTCAAATCACTTGGTCTACA 419
                        ***  *          **  ****  ** **  ** *   **       *  ** * *

consensus_8918#2      AACTCGCACATCAAA-GACTC-TGGAGTAT---ATTTTGGTGCAACTTTATCCGATTTTT 349
consensus_8918#3      AACTCGCACATCAA--GACTC-TGGAGTAT---ATTTTGGTGCAACTT-ATCCGATTTT- 283
consensus_8918#0      AACTCGCACATCAA--GACTC-TGGAGTAT---ATTT-GGTGCAACTT-ATCCGATTTT- 363
consensus_8918#1      CACAGGCATAGTGGGTGATTCGTTTAGCATCCAGTTGAACTGTAACTTCAGCTACTTTTG 479
                       **  *** *      ** ** *  ** **    **    ** ***** * *   **** 

consensus_8918#2      CCAACGA----ATCGTTGAAGGTGTTTCGCGATGGGTCCAACAAGCATGG--CTACGGTA 403
consensus_8918#3      CCAACGA----ATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCACTGGCCTACNGTA 339
consensus_8918#0      CCAACGA----ATCGTTTGAAGTGTTTCGCGATGGGTCCAACAACCATGG--CTACGGTA 417
consensus_8918#1      ACCAAGATGCTACTACCTTATGTGCTGCAACTTTTAAACAGTGGCGGGTGG-CCACTCCA 538
                       * * **    *       * *** * *    *     **         *  * **   *

consensus_8918#2      GCAATTGG-ACCGTCTTCCAGACGAACGATTTCGATGGTACGGTTGATTTCAACTCGCCA 462
consensus_8918#3      GCAATTGG-ACCGTCTTCCAGAGAA--GATNT-GATGGTA-------------------- 375
consensus_8918#0      GCAATTGG-ACCGTCTTCCAGAGAA--GATTT-GATGGTACGGTTGATTTCAAT---CGC 470
consensus_8918#1      ACTGCTATCAANAGCAACCTGAACGGGTATATACNTGAAGGGTGGGAAAGCAGGGATTCC 598
                       *   *   *    *  ** **      ** *   **                       

consensus_8918#2      ACTGGGACGGATTACAAAAAACGGGATTTCGGTAATTTCATGGGCGTGAACATTGGTTAG 522
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      AACTGGACGGATTACAAAAA---CGGATTCGGTAATTTATGGG--GTGAACATTGGTTAG 525
consensus_8918#1      AAATAAAGGAAATACACTTG---GTNATTACCTTTCCCGGAAGGCTTCATCGTTATTCCA 655
                                                                                  

consensus_8918#2      GCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGG 582
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      GCCTCGAGAAACTCAAGAAAATACTGGACACAGAACGCCATGAGTTGCTCATAGTGATGG 585
consensus_8918#1      CTCTGGAAAGGCTAACCCAAACAGTCGATTGCATACGGGGCCGGTCATAAATCACCCGAC 715
                                                                                  

consensus_8918#2      AAGACTTTGAAGGT--AACGGCTTTCGCGAAATAC------------------------- 615
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      AAGACTTTGAAGGTGTAACGGCTTTCGCGAAATACGACAACTTTATGATCGGTAATGCGA 645
consensus_8918#1      GCTGAACAAAGAGTTAAGTTGNAGCCTGATTAACNTGCAGAGATCTGAACTGAAGTGAAC 775
                                                                                  

consensus_8918#2      ------------------------------------------------------------
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      GTGAAAAATATCGGCTCAAATCACTTGGTCTACACACAGGCATAGTGGGTGATTCGTTTA 705
consensus_8918#1      ACTCCGGAACG------------------------------------------------- 786
                                                                                  

consensus_8918#2      ------------------------------------------------------------
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      GCAGCCAGTTGAACTGTAACTTCACTACTTTTGACCAAGATGCTACTACCTTATGTGCTG 765
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#2      ------------------------------------------------------------
consensus_8918#3      ------------------------------------------------------------
consensus_8918#0      CAACTTTTAAAAGTGGCGGGTGGCACTCCAACTGCTATCAAAGCAACCTGAACGGTATAT 825
consensus_8918#1      ------------------------------------------------------------
                                                                                  

consensus_8918#2      -------------------------------------------------------
consensus_8918#3      -------------------------------------------------------
consensus_8918#0      ACATGAAGGGTGGAAAGCAGGATTCAAATAAAGGAATACACTGGTATTACTTACC 880
consensus_8918#1      -------------------------------------------------------
                                                                             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)