cluster # 8949

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Anopheles gambiae
cluster # 8949 cluster # 8949 Sequences # 13 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8949#0 length = 1756 sequences # 7
consensus_8949#1 length = 1431 sequences # 4

consensus_8949#2 length = 549 sequences # 1
consensus_8949#3 length = 247 sequences # 1

consensusID : consensus_8949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 1756
fasta sequence

                              [GTGCAAAAACAAAAGGAAGCAACAAAACACACAAAAACATTTGCTACAGAGACATTGCTTTAGAAAAGTATTATGTCGCAAAAAAAGAAG-AAAAAAAAACACAAAAGACTGGTCTTAACACAAAAGCAGGAGAGAAAGCTACGAGAGAAATGTGAGAGAGGAAGATAAAAATGGTGTTACAAAAATCATAAC----AAAAAAAAACT-AC---CGATGAAGAGGAAGGTGTGTGGCCCCGTAAATATTTCATGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAAAGAAATAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTGCTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAAGAGAAAAGGA--AAAG---ACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTG-GTCAAAGAAACGAAAGTAACGATAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGAAGCGAAATGCAGAAGAAAAACGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGAAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACTTATGTCGTGTAGAAGGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGAGGGTAATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAAGAAAGAAAAAAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGAGAAAATACGTACACTCACACACACACACACGCAAAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATAC-AAAAAAATGTGAAAAACATAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACACACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACAAACGAGAAAAAAGAAGAAGATACAAACAAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAACAAACTCCCCCCTAAACTTGCGCTTCTACTTCAAACAACACGGATACTTGTACCATACCAACAAAATGGCTCTTTGGT]

[+] EMBL BX628996             [GTGCAAAAACAAAAGGAAGCAACAAAACACACAAAAACATTTGCTACAGAGACATTGCTTTAGAAAAGTATTATGTCGCAAAAAAAGAAGAAAAAAAAAACACAAAAGACTGGTCTTAACACAAAAGCAGGAGAGAAAGCTACGAGAGAAATGTGAGAGAGGAAGATAAAAATGGTGTTACAAAAATCATAAC    AAAAAAAAACT AC   CGATGAAGAGGAAGGTGTGTGGCCCCGTAAATATTTCGTGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAAAGAAATAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTGCTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAAGAGAAAAGGACGACGGCTTTCGATGAGTAGCTAAAACAGTAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM605383             [                  ccgACAAAACACACAAAAACATTTGCTACAGAGACATTGCTTTAGAAAAGTATTATGTCGCAAAAAAAGAAG AAAAAAAAACACAAAAGACTGGTCTTAACACAAAAGCAGGAGAGAAAGCTACGAGAGAAATGTGAGAGAGGAAGATAAAAATGGTGTTACAAAAATCACAACAACAAAAAAAAAACTAACTAACGATGAAGAGGAAGGTGTGTGGCCCCGTAAATATTTCATGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAATGAAGTAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTACTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATAATTTGGAAATTAGAAAGAGAAAAGGA  AAAG   ACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGAGTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM634424             [                                                                                                                                                                                                                            ccgGGAAGGTGTGTGGCCCCGTAAATATTTCATGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAATGAAGTAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTACTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATAATTTGGAAATTAGAAAGAGAAAAGGA  AAAG   ACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTG GTCAAAGAAACGAAAGTAACGATAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAATAACAACAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM575415             [                                                                                                                                                                                                                                                                                                       ccgAAAAGAAATAGAACGGGCGGGGGCGTATACAAAATACAGAAAATTGATAGGGTTTTGCTTTGGTTTTTATTTTGCTAGTAAAAAAACACATAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAACTAGAAAGAGAAAAGGA  AAAG   ACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTG GTCAAAGAAACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGAAGCGAAATGCAGAAGAAAAACGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGAAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACTTATGTCGTGTAGAAGGGGTTCAGGAATACAGGAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM587183             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ccgCATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGAAGCGAAATGCAGAAGAAAAACGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGAAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACTTATGTCGTGTAGAAGGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGAGGGTAATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAAGAAAGAAAAAAAGAAACGAGAGAAGTATATATTTTTATGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM631401             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ccgCTCAAGTATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAAGAAAGAAAAAAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGAGAAAATACGTACACTCACACACACACACACGCAAAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATAC AAAAAAATGTGAAAAACATAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACACACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACAAACGAGAAAAAAGAAGAAGATACAAACAAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAACAAACTCCCCCCTAAACTTGCGCTTCTACTTCAAACAACACGGATACTTGTACCATACCAACAAAATGGCTCTTTGGT]
[+] EMBL BM623321             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAAGAAAGAAAAAAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGAGAAAATACGTACACTCACACACACACACACGCAAAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAAATGTGAAAAACATAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACACACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACAAACGAGAAAAAAGAAGAAGATACAAACAAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAGCAgcg                                                                         ]




>consensus_8949#0
GTGCAAAAACAAAAGGAAGCAACAAAACACACAAAAACATTTGCTACAGAGACATTGCTT
TAGAAAAGTATTATGTCGCAAAAAAAGAAGAAAAAAAAACACAAAAGACTGGTCTTAACA
CAAAAGCAGGAGAGAAAGCTACGAGAGAAATGTGAGAGAGGAAGATAAAAATGGTGTTAC
AAAAATCATAACAAAAAAAAACTACCGATGAAGAGGAAGGTGTGTGGCCCCGTAAATATT
TCATGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAAAGAAATAG
AACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTGCTTTGGTTTTTATT
TTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAA
GAGAAAAGGAAAAGACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAA
TTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAA
TTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGATAAATTATACATGCACAAG
GAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCA
CATGACCCACAAACACAAGTTGGCGAACAATGAAGCGAAATGCAGAAGAAAAACGCTCAA
CAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGAAAGGTGGTACGCAAGAACACA
ACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAA
GAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACTTATGTCGTG
TAGAAGGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGT
ACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAA
AAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGAG
GGTAATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAGA
GAAGAAGAAAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAA
AGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAAGAAAGAAAAAAAGAAA
CGAGAGAAGTATATATTTTTATGAATTATAAAAAAACACAACACAAGAAAACAATTTGAA
AAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAA
GAGGGTGGCGTGATGTTTTTGTAGGGAGAAAATACGTACACTCACACACACACACACGCA
AAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAA
AAACATAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACAC
ACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACAAACGAGAAAAAAGAAG
AAGATACAAACAAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAACA
AACTCCCCCCTAAACTTGCGCTTCTACTTCAAACAACACGGATACTTGTACCATACCAAC
AAAATGGCTCTTTGGT

consensusID : consensus_8949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1431
fasta sequence

                              [CCGGTAAATGAAGTAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTACTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATAATTTGGAAATTAGAAAGAGAAAAGGAAAAGACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAATAACAACAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCCGAAGAGGAGCGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACCTTTGATTACTTATGTCGTGTAGGGGG--GGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGGGGGCGATCACTATTAGGATTTCCCCCCTGCCTAACGCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGACAAAAAAAAGAAAGAAAAAAATAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAACAAAAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGCGAAAATACGTACACTCACACACACACACACACACACACACACGCAAAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAAAAACTTAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACATACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACCAACGAAAAAAAAGAAGAAGATACCAACCAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAGCA]

[+] EMBL BM586562             [CCGGTAAATGAAGTAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTACTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATAATTTGGAAATTAGAAAGAGAAAAGGAAAAGACGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAATAACAACAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCCGAAGAGGAGCGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACCTTTGATTACTTATGTCGTGTAGGGGGGAGGGGTTCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM656190             [                                                                                                                                                                                                                                                                                                                                  ccgATTTGGAGATCGTACTCAAATAACAACAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCCGAAGAGGAGCGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACCTTTGATTACTTATGTCGTGTAGGGGG  GGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGGGGGCGATCACTATTAGGATTTCCCCCCTGCCTAACGCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BM613312             [                                                                                                                                                                                                                                                                                                                                                   ccgAAATAACAACAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCCGAAGAGGAGCGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACCTTTGATTACTTATGTCGTGTAGGGGG  GGGGTTCAGGAATACAGGAAAGGCCAAACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGGGGGCGATCACTATTAGGATTTCCCCCCTGCCTAACGCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BM640839             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATTGAACATTTAATGTTAAGGGGGGGCAATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAG   AGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAATGAAAATGAAAAGGAAAGATACACA AAAAAAAGAAACAAAACCACTAGAAGACAAAAAAAAGAAAGAAAAAAATAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAACAAAAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGCGAAAATACGTACACTCACACACACACACACACACACACACACGCAAAAAGGAGAAAAAACACACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAAAAACTTAAAGTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACATACAAACACAAAGAATCACAATGGAAAGGAATAAATCCACATACCAACGAAAAAAAAGAAGAAGATACCAACCAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAGCA]




>consensus_8949#1
CCGGTAAATGAAGTAGAACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTT
TACTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATA
ATTTGGAAATTAGAAAGAGAAAAGGAAAAGACGATGAGTAGCTAAAACAATAGAAAATGA
TTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCG
GTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAA
ATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAATAACAACAACAACGA
AAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCC
GAAGAGGAGCGCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGT
GGTACGCAAGAACACAACAAGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGAT
TTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCC
CAAAACCTTTGATTACTTATGTCGTGTAGGGGGGGGGTTCAGGAATACAGGAAAGGCCAA
ACGCAAAGCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAG
TAAAAACAAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAA
AAGCATTGAACATTTAATGTTAAGGGGGGGCGATCACTATTAGGATTTCCCCCCTGCCTA
ACGCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAAC
AGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGA
AGACAAAAAAAAGAAAGAAAAAAATAAGAAACGAGAGAAGTATATATTTTTATGAATTAT
AAAACAAAAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTT
TCCCAAACGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTG
TAGGGCGAAAATACGTACACTCACACACACACACACACACACACACACGCAAAAAGGAGA
AAAAACACACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAAAAACTTAAA
GTGATGAATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACATACAAACACA
AAGAATCACAATGGAAAGGAATAAATCCACATACCAACGAAAAAAAAGAAGAAGATACCA
ACCAAGGAAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAGCA

consensusID : consensus_8949#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 549
fasta sequence

                              [CCGCCCACGCGTCCGTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAAGAGAAAAGGACGACGGCTTTCGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGAAATGTCGAAGAAGCGCGGTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAACATGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAA]

[+] EMBL BM620786             [CCGCCCACGCGTCCGTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAAGAGAAAAGGACGACGGCTTTCGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTGGCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGAAATGTCGAAGAAGCGCGGTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAACATGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAA]




>consensus_8949#2
CCGCCCACGCGTCCGTTTGGTTTTTATTTTGCTAGTAAAAAAACACACAAGGTTACAAGA
AGTGTTGCAAAAATTTGGAAATTAGAAAGAGAAAAGGACGACGGCTTTCGATGAGTAGCT
AAAACAATAGAAAATGATTAGCAGAAATAATAATTGGTAGCAAAGTTAAAACTATTTTTG
GCGTAATATTAGTGCGGTAATACACATTAAAATTATGTTTGTTTTAGTTTGGTCAAAGAA
ACGAAAGTAACGAGAAATTATACATGCACAAGGAAAACACCATTTGGAGATCGTACTCAA
ACAACAATAACAACGAAAAGCTACAAAAATCACATGACCCACAAACACAAGTTGGCGAAC
AATGCAGCGAAATGTCGAAGAAGCGCGGTCAACAGCCACACAGCCAAGATGAGTGAGATA
TGGAGAAAGGGAAGGTGGTACGCAAGAACACAACAACATGTATGTTTTGCGAGCATTTGT
TTATTTTTGTTGGTTTGATTTTTTGTTTAAATCAAGAGTGATAAGTGACAAGCAAGACGG
AAGGAGAAA

consensusID : consensus_8949#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [GGATACGACAACCTCTTCTCCTATCCCCACTGTCTCCTATTTCATCTTCTCCCATTGGATAATAATAGTATAAGCAAACAAACAAGGCGATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAA]

[-] EMBL AGA280246            [GGATACGACAACCTCTTCTCCTATCCCCACTGTCTCCTATTTCATCTTCTCCCATTGGATAATAATAGTATAAGCAAACAAACAAGGCGATCACTATTAGGATTTCCCCCCTGCCTAACCCTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAA]




>consensus_8949#3
GGATACGACAACCTCTTCTCCTATCCCCACTGTCTCCTATTTCATCTTCTCCCATTGGAT
AATAATAGTATAAGCAAACAAACAAGGCGATCACTATTAGGATTTCCCCCCTGCCTAACC
CTCCAAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGG
AAGAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGA
GAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8949#1      ------------------------------------------------------------
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      GTGCAAAAACAAAAGGAAGCAACAAAACACACAAAAACATTTGCTACAGAGACATTGCTT 60
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ------------------------------------------------------------
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      TAGAAAAGTATTATGTCGCAAAAAAAGAAGAAAAAAAAACACAAAAGACTGGTCTTAACA 120
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ------------------------------------------------------------
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      CAAAAGCAGGAGAGAAAGCTACGAGAGAAATGTGAGAGAGGAAGATAAAAATGGTGTTAC 180
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ------------------------------------------------------------
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAAAATCATAACAAAAAAAAACTACCGATGAAGAGGAAGGTGTGTGGCCCCGTAAATATT 240
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      --------------------------------------------CCGGTAAATGAAGTAG 16
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      TCATGATGCGTGATAAGGGTGATTGGCAGCGATTCGTTTGGGGGAAAGTAAAAGAAATAG 300
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTACTTTGGTTTTTATT 76
consensus_8949#2      --------------------------------CCGCCCACGCGTCCGTTTGGTTTTTATT 28
consensus_8949#0      AACGGGCGGGGGCGTATACAAAATACACAAAATTGATAGGGTTTTGCTTTGGTTTTTATT 360
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      TTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAATAATTTGGAAATTAGAAA 136
consensus_8949#2      TTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAA 88
consensus_8949#0      TTGCTAGTAAAAAAACACACAAGGTTACAAGAAGTGTTGCAAAAATTTGGAAATTAGAAA 420
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      GAGAAAAGGAAAAGA-----CGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAAT 191
consensus_8949#2      GAGAAAAGGACGACGGCTTTCGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAAT 148
consensus_8949#0      GAGAAAAGGAAAAGA-----CGATGAGTAGCTAAAACAATAGAAAATGATTAGCAGAAAT 475
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACAT 251
consensus_8949#2      AATAATTGGTAGCAAAGTTAAAACTATTTTT-GGCGTAATATTAGTGCGGTAATACACAT 207
consensus_8949#0      AATAATTGGTAGCAAAGTTAAAACTATTTTTTGGCGTAATATTAGTGCGGTAATACACAT 535
consensus_8949#3      ------------------------------------GGATACGACAACCTCTTCTCCTAT 24
                                                            ***  *   *       *  **

consensus_8949#1      TAAAATTATGTT-TGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATG 310
consensus_8949#2      TAAAATTATGTT-TGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGAGAAATTATACATG 266
consensus_8949#0      TAAAATTATGTT-TGTTTTAGTTTGGTCAAAGAAACGAAAGTAACGATAAATTATACATG 594
consensus_8949#3      CCCCACTGTCTCCTATTTCATCTTCTCCCATTGGATAATAATAGTATAAG----CAAACA 80
                          * * * *  * *** *  **   * *    *  * * **     *      * *  

consensus_8949#1      CACAAGGAAAACACCATTTGGAGATCGTACTCAAATAACAACAACAACGAAAAGCTACAA 370
consensus_8949#2      CACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAA 326
consensus_8949#0      CACAAGGAAAACACCATTTGGAGATCGTACTCAAACAACAATAACAACGAAAAGCTACAA 654
consensus_8949#3      AACAAGGCGATCACTATTAGGATTTCCCCCCTGCCTAACCCT--CCAAGAAAGTTAATCG 138
                       ******  * *** *** ***  **   *      ***     * * ****    *   

consensus_8949#1      AAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGATATGCCGAAGAGGAGC 430
consensus_8949#2      AAATCACATGACCCACAAACACAAGTTGGCGAACAATGCAGCGAAATGTCGAAGAAGCGC 386
consensus_8949#0      AAATCACATGACCCACAAACACAAGTTGGCGAACAATGAAGCGAAATGCAGAAGAAAAAC 714
consensus_8949#3      AAG--AAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGAAAAAGAAAATGA 196
                      **   *   **   * *** * *   *   *** **   *  *  *     *  *     

consensus_8949#1      GCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAG 490
consensus_8949#2      GGTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGGAAGGTGGTACGCAAG 446
consensus_8949#0      GCTCAACAGCCACACAGCCAAGATGAGTGAGATATGGAGAAAGGAAAGGTGGTACGCAAG 774
consensus_8949#3      AAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGAAAAAA--------- 247
                           * **  *****   ** * **   * *        ***  **             

consensus_8949#1      AACACAACAA---GTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGT 547
consensus_8949#2      AACACAACAACATGTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGT 506
consensus_8949#0      AACACAACAA---GTATGTTTTGCGAGCATTTGTTTATTTTTGTTGGTTTGATTTTTTGT 831
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      TTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACC 607
consensus_8949#2      TTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAA----------------- 549
consensus_8949#0      TTAAATCAAGAGTGATAAGTGACAAGCAAGACGGAAGGAGAAAAAAAGCCCCCCAAAACT 891
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      TTTGATTACTTATGTCGTGTAGGGGGGGGGTTCAGGAATACAGGAAAGGCCAAACGCAAA 667
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      TATGTC------------GTGTAGAAGGGGTTCAGGAATACAGGAAAGGCCAAACGCAAA 939
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      GCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAAC 727
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      GCAAAGAACTAACGCAATGGTACAATACACAAACACAAACCCAGTAAGTGGAGTAAAAAC 999
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATT 787
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAAAACAAAAACAAAAAACAAAAACAAACAAAAAAATACACGAAAGACGTGAAAAGCATT 1059
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      GAACATTTAATGTTAAGGGGGGGCGATCACTATTAGGATTTCCCCCCTGCCTAACGCTCC 847
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      GAACATTTAATGTTAAGGGAGGGTAATCACTATTAGGATTTCCCCCCTGCCTAACCCTCC 1119
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAACACTCAAGAATAACAAACAGGAAGA 907
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAGAAAGTTAATCGAAGAAGAGAAGAAGAAAAAAAAACACTCAAGAATAACAAACAGGAA 1179
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGACAAA 967
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      GAAAAAGAAAATGAAAAGGAAAGATACACACAAAAAAAGAAACAAAACCACTAGAAGAGA 1239
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAAAAGAAAGAAAAAAATAAGAAACGAGAGAAGTATATATTTTTATGAATTATAAAACAA 1027
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAAAAGAAAGAAAAAAAGAAACGAGAGAAGTA-----------TATATTTTTATGAATTA 1288
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAA 1087
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      TAAAAAAACACAACACAAGAAAACAATTTGAAAAGAAACAGCACACTAAACTTTCCCAAA 1348
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      CGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGCG 1147
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      CGGTACCCCACAGTATAAGTAAGGGAGTGAAAGAGGGTGGCGTGATGTTTTTGTAGGGAG 1408
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAAATACGTACACTCACACACACACACACACACACACACACGCAAAAAGGAGAAAAAACA 1207
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAAATACGTACACTCACACACACA------------CACACGCAAAAAGGAGAAAAAACA 1456
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      CACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAAAAACTTAAAGTGATGA 1267
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      CACCAAAACAAAAAGAGGAGAAAATAAATACAAAAAAATGTGAAAAACATAAAGTGATGA 1516
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACATACAAACACAAAGAATC 1327
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      ATCTATCAATCTACTAAACACAAAGAAAAACATCCATAAAACACACAAACACAAAGAATC 1576
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ACAATGGAAAGGAATAAATCCACATACCAACGAAAAAAAAGAAGAAGATACCAACCAAGG 1387
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      ACAATGGAAAGGAATAAATCCACATACAAACGAGAAAAAAGAAGAAGATACAAACAAAGG 1636
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      AAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAGCA---------------- 1431
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      AAGCAAAAAGCACTATTTACTTATACTCTAATAAGGCGAAAACAAACTCCCCCCTAAACT 1696
consensus_8949#3      ------------------------------------------------------------
                                                                                  

consensus_8949#1      ------------------------------------------------------------
consensus_8949#2      ------------------------------------------------------------
consensus_8949#0      TGCGCTTCTACTTCAAACAACACGGATACTTGTACCATACCAACAAAATGGCTCTTTGGT 1756
consensus_8949#3      ------------------------------------------------------------