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Anopheles gambiae
cluster # 8956 cluster # 8956       Sequences # 13       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8956#0 length = 1889 sequences # 9  
consensus_8956#1 length = 717 sequences # 2  
consensus_8956#2 length = 650 sequences # 1  
consensus_8956#3 length = 260 sequences # 1  

consensusID : consensus_8956#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1889
fasta sequence
                              [TGCGAGGCGCGCGTATCTTTCGCGCTTTCTCACACCGAAGAGTGGCGCTCTCTCCCTCGGACCCGACGCAGCAGCAGCAGCAGTGGAGAAGGGCGCGGCGGAATGTGATCGATCAACAGTGTGTGTGTATGCCCTGTTGTAATATGGCGGGGGCCGAAAGTGGTTCAAGTTGTAAATTGATTTTGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACAAAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAG---GATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTTGAAAAGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTAC--------GAGAGAGAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGTAAAGAAGAGCAAACACAGCAGGCAGAAAC--------AACAACAAAACCACCA-CCCCGTTAAACGATACTAC--TTTTTTTTGGATATACTTTACTCCTTTTTTT-TCGCGCGCGATATGTGTTTGTATGAGTTTTTAAAAGATTGTTTAAATTAAAGAAAAGAAGCTAAAGTAACTTCGCATGCGCGTGGGGCGACACATGCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCAGTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACAAACGAAACAAAAACAAAACAACTGATGCCAGATTTCTGTTCTTTTGTGTATTACACTTTT-AATATATCCTATCCGGGTTTTGCATTTCCCGAACCGCCCGCTAAA-CCCCTCTCCTTTTGTCGGTACGTGGAAGATGTTTTTTTTTCCGGGTGTTAGTGTGATTTTCGGTCGATGCGAGACAGTGTTTGTCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATTTTGTAAGTCGCTCAAAAACTGACGATTTTTGCTGATTTGCGTGTCACTATTTTTGGGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTC-GAAGGAATCGCATTATGGGCGGGATTCCCNATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGTTGTGTGTTAGAAAAGTAGGTTTGATGGAAGCCACCGTGGCCACACACGCACACCCATACACAAAGAGACTCAACAAACGGGCGACGATGCTCTGATAATGATGATGATGATGTGCTAACATAAACAAAAACGAACGAATTTCTGAAGTTTTCCTCTTCTCTAACTCACGATGCAAACAAACAAATAAACAAACAAACTGGAATGTTGTATACACAGACACACAAACAAACAAACAAACATGAACGAGCAAGTGAGAGATGCATTATATACATAATAATAGTGGAAATGAAATGACAAA]

[+] EMBL BX610280             [TGCGAGGCGCGCGTATCTTTCGCGCTTTCTCACACCGAAGAGTGGCGCTCTCTCCCTCGGACCCGACGCAGCAGCAGCAGCAGTGGAGAAGGGCGCGGCGGAATGTGATCGATCAACAGTGTGTGTGTATGCCCTGTTGTAATATGGCGGGGGCCGAAAGTGGTTCAAGTTGTAAATTGATTTTGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACAAAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAG   GATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTTGAAAAGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTAC        GAGAGAGAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGTAAAGAAGAGCAAACACAGCAGGCAGAAAC        AACAACAAAACCACCACCCCCGTT AACGATACTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX602279             [                                                                                                                                                                                                                                                                                                                                            aAAAAAC   TGCAACAAAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAGGATGATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTTGAAAAGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTACGAGAGAGAGAGAGAGAGAGAGAAGGAGAGAAAGGAAGCGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGTAAAGAAGAGCAAACACAGCAGGCAGAAACAACATCAAAACAACAAAACCACCA CCCCGTTAAACGATACTACT TTTTTTTTGGATATACTTTATTCCTTTTTCT TCGCGCGCGATATGTGTTTGTATGAGTTTTTAAAAGATTGTTTAAATTAAAGAAAAGAAGCTAAAGTAACTTCGCATGCGCGTGGGGCGACACATGCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCATTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL BX615200             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTTGAAAAGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTAC        GAGAGAGAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGTAAAGAAGAGCAAACACAGCAGGCAGAAAC        AACAACAAAACCACCA CCCCGTTAAACGATACTAC  TTTTTTTTGGATATACTTTACTCCTTTTTTT TCGCGCGCGATATGTGTTTGTATGAGTTTTTAAAAGATTGTTTAAATTAAAGAAAAGAAGCTAAAGTAACTTCGCATGCGCGTGGGGCGACACATGCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCAGTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM592208             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ccgGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGTAAAGAAGAGCAAACACAGCAGGCAGAAACAACAACAAAACAACAAAACCACCA CCCCGTTAAACGATACTACTTTTTTTTTTGGATATACTTTACTCCTTTTTTTCTCGGGCGCGATATGTGTTTGTATGAGTTTTTAAAAGATTGTTTAAATTAAAGAAAAGAAGCTAAAGTAACTTCGCATGCGCGTGGGGCGACACATGCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCAGTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTAT  AAAAAACAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AGA285715            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCAGTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACATAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA284409            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGTAGAGATAGAGAGATAGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACAAACGAAACAAAATCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX618730             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GCCCTCCATTTTCCCGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACAAACGAAACAAAAACAAAACAACTGATGCCAGATTTCTGTTCTTTTGTGTATTACACTTTT AATATATCCTATCCGGGTTTTGCATTTCCCGAACCGCCCGCTAAA CCCCTCTCCTTTTGTCGGTACGTGGAAGATGTTTTTTTTTCCGGGTGTTAGTGTGATTTTCGGTCGATGCGAGACAGTGTTTGTCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AL932924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             atccccagtTAAACTC CC ACCAGTC  AANCAATTAC TTAGTAAGAGAGCGTGTGTGT ATAGTGATTTGCAA  TTTGTGTAT AAAAAAACCAACGAAACAAAAACAAAACAACTGATGCCAGATTTCTG TC TTTGTGTATTACACTTTTAAATATATCCTATCCGGGTTTTGCATTTCCCGAACCGCCCGCTAAACCCCCTCTCC TTTGTCGGTACGTGGAAGATG TTTTTTTTCCGGGTGTTAGTGTGATTTTCGGTCGATGCGAGACAG G TTGTCGAGTC   TTTG TTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATTTTGTAAGTCGCTCAAAAACTGACGATTTTTGCTGATTTGCGTGTCACTATTTTTGGGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTC GAAGGAATCGCATTATGGGCGGGATTCCCNATTTT                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX614777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCGGTCGATGCGAGACAGTGTTTTTCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATTTTGTAAGTCGCTCAAAAACTGACGATTTTTGCTGATTTGCGTGTCACTATTTTTGGGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGTTGTGTGTTAGAAAAGTAGGTTTGATGGAAGCCACCGTGGCCACACACGCACACCCATACACAAAGAGACTCAACAAACGGGCGACGATGCTCTGATAATGATGATGATGATGTGCTAACATAAACAAAAACGAACGAATTTCTGAAGTTTTCCTCTTCTCTAACTCACGATGCAAACAAACAAATAAACAAACAAACTGGAATGTTGTATACACAGACACACAAACAAACAAACAAACATGAACGAGCAAGTGAGAGATGCATTATATACATAATAATAGTGGAAATGAAATGACAAA]


>consensus_8956#0 TGCGAGGCGCGCGTATCTTTCGCGCTTTCTCACACCGAAGAGTGGCGCTCTCTCCCTCGG ACCCGACGCAGCAGCAGCAGCAGTGGAGAAGGGCGCGGCGGAATGTGATCGATCAACAGT GTGTGTGTATGCCCTGTTGTAATATGGCGGGGGCCGAAAGTGGTTCAAGTTGTAAATTGA TTTTGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAA AAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTC CCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACAAAACAACAAGA AACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAGGATGATGC GTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTTGAAAAGTATA AGGCAAAAGTCATATGGTGTATGTGTATGTGTACGAGAGAGAGAGAGAAGGAGAGAAAGG AAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAAAATATAGTTTGT AAAGAAGAGCAAACACAGCAGGCAGAAACAACAACAAAACCACCACCCCGTTAAACGATA CTACTTTTTTTTGGATATACTTTACTCCTTTTTTTTCGCGCGCGATATGTGTTTGTATGA GTTTTTAAAAGATTGTTTAAATTAAAGAAAAGAAGCTAAAGTAACTTCGCATGCGCGTGG GGCGACACATGCTACACGGAGTTGTGTCGTGCCGTAGTGAAGCAGTAGAGATAGAGAGAT AGAGGGAGGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGGAACAAAAC AAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGTAAGAGAGCGTGTG TGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACAAACGAAACAAAAACAAAACAA CTGATGCCAGATTTCTGTTCTTTTGTGTATTACACTTTTAATATATCCTATCCGGGTTTT GCATTTCCCGAACCGCCCGCTAAACCCCTCTCCTTTTGTCGGTACGTGGAAGATGTTTTT TTTTCCGGGTGTTAGTGTGATTTTCGGTCGATGCGAGACAGTGTTTGTCGAGTCTTTTTT GTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGA AAATGGGAAACAAAAATCATTTTGTAAGTCGCTCAAAAACTGACGATTTTTGCTGATTTG CGTGTCACTATTTTTGGGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTC CACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGAAGGAATCGCATTA TGGGCGGGATTCCCNATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAAC GAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAG AGAGAGAGAGAGATGATGGAGAGACGAATGTTGTGTGTTAGAAAAGTAGGTTTGATGGAA GCCACCGTGGCCACACACGCACACCCATACACAAAGAGACTCAACAAACGGGCGACGATG CTCTGATAATGATGATGATGATGTGCTAACATAAACAAAAACGAACGAATTTCTGAAGTT TTCCTCTTCTCTAACTCACGATGCAAACAAACAAATAAACAAACAAACTGGAATGTTGTA TACACAGACACACAAACAAACAAACAAACATGAACGAGCAAGTGAGAGATGCATTATATA CATAATAATAGTGGAAATGAAATGACAAA



consensusID : consensus_8956#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 717
fasta sequence
                              [GAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGATGATTTTTCCCCCTTGATAGCGAGTAAGCTGTGCGAGAAGCGAGTGAATCCAGGGCGGGAAAGTGAGCAGTAGAGGGACGATTAGTTTAGATTAAACGTTTGTGTTTTCCTTAG-TTTTTTTCC-TTTTTTTTTAAAGTGTAAGGTCCCATTTCTTCCACCCTCTTCTAATTGTCCACCCACACGACACGAAAGACCCATCCGACCCGACTCGACCGGCCGCCTGCTACTGTTGTCCCCTTATCTGTGAAAGAGTTTCCCCATTTTCGTGGGAACCGATTTGAGTATAAGAGTGTGTGTTTGTGTGTGGGGGGTGTGAAAGGAGGTAGGGAGGGTGGGAGTTTCTATGGGGTCGGGAAGGAGAAAGAGCAGGGTAGAGAAGGGGGGGTGATAAGGCGCGCATTCAACAGCCACCAGCAGCAGCAGCAGCGCTGGGGTGGCATTGAGGGAAAATTGGCGACGAACTACATATTAGGGTGTAAGAAGCGAA]

[+] EMBL BX612899             [GAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAAGGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGATGATTTTTCCCCCTTGATAGCGAGTAAGCTGTGCGAGAAGCGAGTGAATCCAGGGCGGGAAAGTGAGCAGTAGAGGGACGATTAGTTTAGATTAAACGTTTGTGTTTTCCTTAG TTTTTTTCC TTTTTTTTTAAAGTGTAAGGTCCCATTTCTTCCACCCTCTTCTAATTGTCCACCCACACGACACGAAAGACCCATCCGACCCGACTCGACCGGCCGCCTGCTACTGTTGTCCCCTTATCTGTGAAAGAGTTTCCCCATTTTCGTGGGAACCGATTTGAGTATAAGAGTGTGTGTTTGTGTGTGGGGGGTGTGAAAGGAGGTAGGGAGGGTGGGAGTTTCTATGGGGTCGGGAAGGAGAAAGAGCAGGGTAGAGAAGGGGGGGTGATAAGGCGCGCATTCAACAGCCACCAGCAGCAGCAGCAGCGCTGGGGTGGCATTGAGGGAAAATTGGCGACGAACTACATATTAGGGTGTAAGAAGC   ]
[+] EMBL BX609169             [                                                                                                                          AGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGATGATTTTTCCCCCTTGATAGCGAGTAAGCTGTGCGAGAAGCGAGTGAATCCAGGGCGGGAAAGTGAGCAGGAGAGGGACGATTAGTTTAGATTAAACGTTTGTGTTTTCCTTAGTTTTTTTTCCTTTTTTTTTTAAAGTGTAAGGTCCCATTTCTTCCACCCTCTTCTAATTGTCCACCCACACGACACGAAAGACCCACCCGACCCGACCCGACCGGCCGCCTGCTACTGTTGTCCCCTTATCTGTGAAAGAGTTTCCCCATTTTCGTGGGAACCGATTTGAGTATAAGAGTGTGTGTTTGTGTGTGGGGGGTGTGAAAGGAGGTAGGGAGGGTGGGAGTTTCTATGGGGTCGGGAAGGAGAAAGAGCAGGGTAGAGAAGGGGGGGTGATAAGGCGCGCATTCAACAGCCACCAGCAGCAGCAGCAGCGCTGGGGTGGCATTGAGGGAAAATTGGCGACGAACTACATATTAGGGTGTAAGAAGCGAA]


>consensus_8956#1 GAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGC CTCGGAAGGAATCGCATTATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAAA GGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGA AGAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGATGATTTTTCC CCCTTGATAGCGAGTAAGCTGTGCGAGAAGCGAGTGAATCCAGGGCGGGAAAGTGAGCAG TAGAGGGACGATTAGTTTAGATTAAACGTTTGTGTTTTCCTTAGTTTTTTTCCTTTTTTT TTAAAGTGTAAGGTCCCATTTCTTCCACCCTCTTCTAATTGTCCACCCACACGACACGAA AGACCCATCCGACCCGACTCGACCGGCCGCCTGCTACTGTTGTCCCCTTATCTGTGAAAG AGTTTCCCCATTTTCGTGGGAACCGATTTGAGTATAAGAGTGTGTGTTTGTGTGTGGGGG GTGTGAAAGGAGGTAGGGAGGGTGGGAGTTTCTATGGGGTCGGGAAGGAGAAAGAGCAGG GTAGAGAAGGGGGGGTGATAAGGCGCGCATTCAACAGCCACCAGCAGCAGCAGCAGCGCT GGGGTGGCATTGAGGGAAAATTGGCGACGAACTACATATTAGGGTGTAAGAAGCGAA



consensusID : consensus_8956#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 650
fasta sequence
                              [GCAGAATTGCCCGAGGTTAAAAGAAAACACAACTACAAACAAAACAAAAAAACTGCAACAAAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAGGATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTCTGAAAACGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTACGAGAGAGCAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAACACTATACNCTCCNCGTANACACGACACGAGCAAACACNGCAGGCAGAAACAACAACAAAAGCCACCACCCCGCTTAACACGAATACTACCTGTTCNGTCCAGGAGTATACCTTTACATCCCTTTNCTTTTCGCGCGCGATATGGTGATCCNGTNNTGAGTCCTCTNTAACAAGATTGTATTCAAATTNAAGAAAAGGAAGCTNANCGTACACTTCGCCATGCGCGTGCGGGCGACACATGCGTACACGGAGTTCGTAGTCGTGCCGTAGTGAAGCCAGTAGAGATAGAGAGACTAGAGGGAGCGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGG]

[+] EMBL AL934591             [GCAGAATTGCCCGAGGTTAAAAGAAAACACAACTACAAACAAAACAAAAAAACTGCAACAAAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGATGAGGATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTTCTGAAAACGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTACGAGAGAGCAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTATAACACTATACNCTCCNCGTANACACGACACGAGCAAACACNGCAGGCAGAAACAACAACAAAAGCCACCACCCCGCTTAACACGAATACTACCTGTTCNGTCCAGGAGTATACCTTTACATCCCTTTNCTTTTCGCGCGCGATATGGTGATCCNGTNNTGAGTCCTCTNTAACAAGATTGTATTCAAATTNAAGAAAAGGAAGCTNANCGTACACTTCGCCATGCGCGTGCGGGCGACACATGCGTACACGGAGTTCGTAGTCGTGCCGTAGTGAAGCCAGTAGAGATAGAGAGACTAGAGGGAGCGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGG]


>consensus_8956#2 GCAGAATTGCCCGAGGTTAAAAGAAAACACAACTACAAACAAAACAAAAAAACTGCAACA AAACAACAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATTATGATGATGAT GAGGATGATGCGTGTGTGATTCGCTCGTGACTGCATGAAAGCTACATTTGTAAGAGCGTT CTGAAAACGTATAAGGCAAAAGTCATATGGTGTATGTGTATGTGTACGAGAGAGCAGAGA GAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAACCCGGCTAAAGTAT AACACTATACNCTCCNCGTANACACGACACGAGCAAACACNGCAGGCAGAAACAACAACA AAAGCCACCACCCCGCTTAACACGAATACTACCTGTTCNGTCCAGGAGTATACCTTTACA TCCCTTTNCTTTTCGCGCGCGATATGGTGATCCNGTNNTGAGTCCTCTNTAACAAGATTG TATTCAAATTNAAGAAAAGGAAGCTNANCGTACACTTCGCCATGCGCGTGCGGGCGACAC ATGCGTACACGGAGTTCGTAGTCGTGCCGTAGTGAAGCCAGTAGAGATAGAGAGACTAGA GGGAGCGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCCCGGGG



consensusID : consensus_8956#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 260
fasta sequence
                              [AATGCAAGTGTAGATGTTATTTTCTTTTCTTCTTTGATTCGAAAATTGTTACAGCAAAATAATTATAAGCAAATATATATATATAAAGTAGTGTTCATTTTTTTCATCGTATGTATACATATATAGTTTTTTTATAAACAATCGATTCCTTCCGAGACAGTGTTTGTCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATT]

[-] EMBL BX626375             [AATGCAAGTGTAGATGTTATTTTCTTTTCTTCTTTGATTCGAAAATTGTTACAGCAAAATAATTATAAGCAAATATATATATATAAAGTAGTGTTCATTTTTTTCATCGTATGTATACATATATAGTTTTTTTATAAACAATCGATTCCTTCCGAGACAGTGTTTGTCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATT]


>consensus_8956#3 AATGCAAGTGTAGATGTTATTTTCTTTTCTTCTTTGATTCGAAAATTGTTACAGCAAAAT AATTATAAGCAAATATATATATATAAAGTAGTGTTCATTTTTTTCATCGTATGTATACAT ATATAGTTTTTTTATAAACAATCGATTCCTTCCGAGACAGTGTTTGTCGAGTCTTTTTTG TTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTTCGCAGCATCTTGAA AATGGGAAACAAAAATCATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8956#0      TGCGAGGCGCGCGTATCTTTCGCGCTTTCTCACACCGAAGAGTGGCGCTCTCTCCCTCGG 60
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      ACCCGACGCAGCAGCAGCAGCAGTGGAGAAGGGCGCGGCGGAATGTGATCGATCAACAGT 120
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      GTGTGTGTATGCCCTGTTGTAATATGGCGGGGGCCGAAAGTGGTTCAAGTTGTAAATTGA 180
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      TTTTGCGGTACGAGAGAGAGAGAGAGAGAGAGAGAGTCCTTTAATTCCACTGCCGCGGAA 240
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AAGAATGATAAACTGTAGTACAAAAACGCCTCGGAAGGAATCGCATTATGGGCGGCATT- 299
consensus_8956#2      ---------------------------------------------------GCAGAATTG 9
consensus_8956#3      -------------------------------------------------------AATG- 4
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      CCCGATTTTATACAACAACA--ACAAAGAAAAGGAGAAAAACGCTTT--CAACAAAACAA 355
consensus_8956#2      CCCGAGGTTAAAAGAAAACACAACTACAAACAAAACAAAAAAACTG---CAACAAAACAA 66
consensus_8956#3      --CAAGTGTAGATGTTATTTTCTTTTCTTCTTTGATTCGAAAATTGTTACAGCAAAATAA 62
consensus_8956#1      GAGAGAGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGC 60
                                                        *     *   *     *  ****   

consensus_8956#0      CAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATT-----ATGATGATGATG 410
consensus_8956#2      CAAGAAACGAAACGTAAAAATGTAAAATCCCCCTCCCAATATT-----ATGATGATGATG 121
consensus_8956#3      TTATAAGC-AAATATATATATATAAAGTAGTGTTCATTTTTTTC----ATCGTATGTATA 117
consensus_8956#1      CTCGGAAGGAATCGCAT-TATGGGCGGCATTCCCGATTTTATACAACAACAACAAAGAAA 119
                           *   **    *   **                  * *      *        *  

consensus_8956#0      AGGATG-ATGCGTGTGTGATTCGCTCGTGA---------CTGCATGAAAGCTA-CATTTG 459
consensus_8956#2      AGGATG-ATGCGTGTGTGATTCGCTCGTGA---------CTGCATGAAAGCTA-CATTTG 170
consensus_8956#3      CATAT--ATAGTTTTTTTATAAACAATCGA---------TTCCTTCCGAGACAGTGTTTG 166
consensus_8956#1      AGGAGAAAAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCG 179
                         *   *      *   *    *     *              *    *       * *

consensus_8956#0      TAAGAGCGTT---TGAAAA-GTATAAGGCAAAAGTCATATGGTGTATGTGTA--TGTGTA 513
consensus_8956#2      TAAGAGCGTTC--TGAAAACGTATAAGGCAAAAGTCATATGGTGTATGTGTA--TGTGTA 226
consensus_8956#3      TC-GAGTCTTT--TTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTC 223
consensus_8956#1      AA-GAGTGATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAG-ACGAATGATGATTTT 237
                         ***   *   *      *     *    *    *    * * * *  *       * 

consensus_8956#0      CGAGAGAG-AGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAA 572
consensus_8956#2      CGAGAGAGCAGAGAGAAGGAGAGAAAGGAAGAGGAATGTGAAGACCAACTCTCGCCCTAA 286
consensus_8956#3      TTTCGCAGCATCTTGAAAATGGGAAACAAAAATCATT----------------------- 260
consensus_8956#1      TCCCCCTTGATAGCGAGTAAGCTGTGCGAGAAGCGA-GTGAATCCAGGGCGGGAAAGTGA 296
                               *    **    *       *  *                            

consensus_8956#0      CCCGGCTAAAGTATAAAA-TATAGTTT----GTAAAGAAGA-----GCAAACACAGCAGG 622
consensus_8956#2      CCCGGCTAAAGTATAACACTATACNCTCCNCGTANACACGACACGAGCAAACACNGCAGG 346
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      GCAGTAGAGGGACGATTAGTTTAGATTAAACGTTTGTGTTTTCC--TTAGTTTTTTTCCT 354
                                                                                  

consensus_8956#0      CAGAAACAACAACAAAA-CCACCACCCCGTTAAACG---ATACTACTTTTTTTT-----G 673
consensus_8956#2      CAGAAACAACAACAAAAGCCACCACCCCGCTTAACACGAATACTACCTGTTCNGTCCAGG 406
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      TTTTTTTTAAAGTGTAAGGTCCCATTTCTTCCACCCT--CTTCTAATTGTCCACCC--AC 410
                                                                                  

consensus_8956#0      GATATACTTTA----CTCCTTTTTTTTCGCGCGCGATATG----TGTTTGTATGAGT--- 722
consensus_8956#2      AGTATACCTTTACATCCCTTTNCTTTTCGCGCGCGATATGGTGATCCNGTNNTGAGTCCT 466
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ACGACACGAAAGACCCATCCGACCCGACTCGACCGGCCGCCTGCTACTGTTGTCCCCTTA 470
                                                                                  

consensus_8956#0      -TTTTAAAAGATTGT--TTAAATTAAAGAAAAG-AAGCTAAA-GTA-ACTTCGC-ATGCG 775
consensus_8956#2      CTNTAACAAGATTGTATTCAAATTNAAGAAAAGGAAGCTNANCGTACACTTCGCCATGCG 526
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      TCTGTGAAAGAGTTTCCCCATTTTCGTGGGAACCGATTTGAGTATAAGAGTGTGTGTTTG 530
                                                                                  

consensus_8956#0      CGTG-GGGCGACACATGC-TACACGGAGTT-GT-GTCGTGCCGTAGTGAAGC-AGTAGAG 830
consensus_8956#2      CGTGCGGGCGACACATGCGTACACGGAGTTCGTAGTCGTGCCGTAGTGAAGCCAGTAGAG 586
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      TGTGTGGGGGGTGTGAAAGGAGGTAGGGAGGGTGGGAGTTTCTATGGGGTCGGGAAGGAG 590
                                                                                  

consensus_8956#0      ATAGAG-AGA-TAGAGGGAG-GAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCC 887
consensus_8956#2      ATAGAG-AGACTAGAGGGAGCGAAGGAGGGGAGCCCATAGAAGGAGGCCCTCCATTTTCC 645
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      AAAGAGCAGGGTAGAGAAGGGGGGGTGATAAGGCGCGCATTCAACAGCCACCAGCAGCAG 650
                                                                                  

consensus_8956#0      CGGGGAACAAAACAAACAAACACCTAAACTCACCAACCAGTCCAAAATAATTACTTTAGT 947
consensus_8956#2      CGGGG------------------------------------------------------- 650
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      CAGCAGCGCTGGGGTGGCATTGAGGGAAAATTGGCGACGAACTACATATTAGGGTGTAAG 710
                                                                                  

consensus_8956#0      AAGAGAGCGTGTGTGTAATAGTGATTTGCAATTTTTGTGTATAAAAAAAACAAACGAAAC 1007
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      AAGCGAA----------------------------------------------------- 717
                                                                                  

consensus_8956#0      AAAAACAAAACAACTGATGCCAGATTTCTGTTCTTTTGTGTATTACACTTTTAATATATC 1067
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      CTATCCGGGTTTTGCATTTCCCGAACCGCCCGCTAAACCCCTCTCCTTTTGTCGGTACGT 1127
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      GGAAGATGTTTTTTTTTCCGGGTGTTAGTGTGATTTTCGGTCGATGCGAGACAGTGTTTG 1187
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      TCGAGTCTTTTTTGTTTGTGTTGGCTTGAGAGGAGGACGAGGACGTCTTGTTACTTCTTT 1247
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      CGCAGCATCTTGAAAATGGGAAACAAAAATCATTTTGTAAGTCGCTCAAAAACTGACGAT 1307
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      TTTTGCTGATTTGCGTGTCACTATTTTTGGGCGGTACGAGAGAGAGAGAGAGAGAGAGAG 1367
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AGTCCTTTAATTCCACTGCCGCGGAAAAGAATGATAAACTGTAGTACAAAAACGCCTCGA 1427
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AGGAATCGCATTATGGGCGGGATTCCCNATTTTATACAACAACAACAAAGAAAAGGAGAA 1487
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AAACGCTTTCAACGAACGGCCAAAAGGAGAAGCCAAGTGGGCGGCGGAGATCGAAGAGTG 1547
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      ATAGATGTGATAGAGAGAGAGAGAGATGATGGAGAGACGAATGTTGTGTGTTAGAAAAGT 1607
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AGGTTTGATGGAAGCCACCGTGGCCACACACGCACACCCATACACAAAGAGACTCAACAA 1667
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      ACGGGCGACGATGCTCTGATAATGATGATGATGATGTGCTAACATAAACAAAAACGAACG 1727
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      AATTTCTGAAGTTTTCCTCTTCTCTAACTCACGATGCAAACAAACAAATAAACAAACAAA 1787
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      CTGGAATGTTGTATACACAGACACACAAACAAACAAACAAACATGAACGAGCAAGTGAGA 1847
consensus_8956#2      ------------------------------------------------------------
consensus_8956#3      ------------------------------------------------------------
consensus_8956#1      ------------------------------------------------------------
                                                                                  

consensus_8956#0      GATGCATTATATACATAATAATAGTGGAAATGAAATGACAAA 1889
consensus_8956#2      ------------------------------------------
consensus_8956#3      ------------------------------------------
consensus_8956#1      ------------------------------------------
                                                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)