These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_90#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCAGTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTACGAGGCGCCCGCCAAAGCGTACCACGCCCCGGGCCCGGGCTATCACGCTCCGGNTCACCACGCCCCGGGCCCGGGGCTAACACGCACCGGCTTCCCACACACGGGCGGATACGCTCAACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGCGCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCCACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATACGCCGGAACCGGCCACGGATACCGCTNCGTATCGTCCGAGGCTGACCAGGGCGTTCGGCNGGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGANCAACAGCTGGATCAACGACTGGAATAGAT] [+] EMBL BX467675 [AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCAGTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTACGAGGCGCCCGCCAAAGCGTACCACGCCCCGGGCCCGGGCTATCACGCTCCGGNTCACCACGCCCCGGGCCCGGGGCTAACACGCACCGGCTTCCCACACACGGGCGGATACGCTCAACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGCGCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCCACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATACGCCGGAACCGGCCACGGATACCGCTNCGTATCGTCCGAGGCTGACCAGGGCGTTCGGCNGGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGANCAACAGCTGGATCAACGACTGGAATAGAT] consensusID : consensus_90#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence [ACATCATTTATTATGCATCATGTTTTCCCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCCTCGCCGTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAAATACTTTCGCACGATTACAGCACACACTTTTCTCATTTTAAACACATAAAACGGTCTCGCGAGACTCGTTTGCGTACGACAAAAACACAGACACGCACGCTTCAATGATGTTTAGTACAAATATATTGCTGTCTTTAAAGAAAAGCATCCATTAGCTGCATCGGTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTCTGTCTGCTTGCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATACAGACATTGCGTCTTGCTTTGGCTGCTCTTCT] [+] EMBL BX616607 [ACATCATTTATTATGCATCATGTTTTCCCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCCTCGCCGTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAAATACTTTCGCACGATTACAGCACACACTTTTCTCATTTTAAACACATAAAACGGTCTCGCGAGACTCGTTTGCGTACGACAAAAACACAGACACGCACGCTTCAATGATGTTTAGTACAAATATATTGCTGTCTTTAAAGAAAAGCATCCATTAGCTGCATCGGTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTCTGTCTGCTTGCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATACAGACATTGCGTCTTGCTTTGGCTGCTCTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_90#0 AGGCAGAATCTGCGCACGAGGGCACACCCAACTTATCATCATGAACACATCGTAGCAGCA 60 consensus_90#1 ------------------------------------------------------------ consensus_90#0 GTCATCCTCTCCATCGTCGTCGTCGGTGCCATGTGGCGATTACGCCGCCCCGGCCAAGTA 120 consensus_90#1 -----------------------------------------ACATCATTT--ATTATGCA 17 ** * * * * consensus_90#0 CGAGGCGCCCGCCAAAGCGTACCACGC-CCCGGGCCCGGGCTATCACGCTCCGGNTCACC 179 consensus_90#1 TCATGTTTTC-CCATTGCTAACTTCACGCTTCGGCTGGGGTCGTCGTGTGCC---TCGCC 73 * * * *** ** ** * * * *** *** ** * ** ** ** consensus_90#0 ACGCCCCGGGCCCGGGGCTAACA-CGCACCGGCTTCCCACACACGG-GCGGATACGCTCA 237 consensus_90#1 GTGTAAGGGGTCACGCGGAAGCATCATACAAGAACGAAACGAACGACAAGGGAAAGAAAA 133 * *** * * * * ** * ** * ** *** ** * * * consensus_90#0 ACACTCGGCTCCGAGGTTGTCACGCTTACGCCGCGAGGGCCCGCAATGGTCAAGTGCGGC 297 consensus_90#1 ATACTT--TCGCACGATTACAGCACACACTTTTC------TCATTTTAAACACATAAAAC 185 * *** * * ** * * ** * * * ** * * consensus_90#0 GCTTACCTGCTGGTCGGCTGCGCTCCCAACAGTTGNCCACGGTGCCGTGCGTTCCCGGCC 357 consensus_90#1 GGTCTCGCGAGACTCGTTTGCGTA--CGACAA--AAACACAGACACGCACGCTTC-AATG 240 * * * * *** **** * *** *** * ** ** * * consensus_90#0 ACGGNGGACACAGGTGGATACGCCGGCCCTGGCCANGNCCCGGGCATGGACCATGGATAC 417 consensus_90#1 ATGTTTAGTACAAATATAT-TGCTGTCTTTAAAGAAAAGC-ATCCATTAGC--TGCATCG 296 * * *** * ** ** * * * * * *** * ** ** consensus_90#0 GCCGGAACCGGCCACGGATACCGCTNCG-TATCGTCCGAGGCTGACCAGGGCGTTCGGCN 476 consensus_90#1 GTTTATGGCCGATTTGGTTCCCGATTTACTTTCCTCCTAATCTGTCCTTC-TGTCTGCTT 355 * * * ** * *** * * ** *** * *** ** ** * consensus_90#0 GGCTTTCGAGTTTCGAGGGAATAAGCGCGGNGACTGATCAACTGAGCNACTCTACNGGAN 536 consensus_90#1 GCTTCTCGCACTCCCAGGAGATTCCCATTTTATACCATTTTTTTACACACACTTACATAC 415 * * *** * * *** ** * ** * * ** ** * consensus_90#0 CAACAGCTGGATCAACGACTGGAATAGAT---- 565 consensus_90#1 AGACA-TTGCGTCT-TGCTTTGGCTGCTCTTCT 446 *** ** ** * * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||