cluster # 906

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Anopheles gambiae
cluster # 906 cluster # 906 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_906#0 length = 693 sequences # 1

consensus_906#1 length = 495 sequences # 1

consensusID : consensus_906#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [CAGAATCGGCACGATGGCAGCAGCGAGGCAAACACACGCTAGCAAGCCAGCTTTCCGATTCATCAATCAATTCTACTGCCCAAACATGAAATCGTTTCAAATCGCCACCCTAACCGTGCTGCTGGTGCTGTTGGCCGGTACCGCATCGGCCAAGAAAGCGTCCACCATCTTCGGCATGCCGCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTTCCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCTCTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTCCGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCAGTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGCTAACACTTCGCCGTGCAACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCCTCGACGAGTTCCGCAAGTACGTCGACTCGAACATGAACTCGCTCATCGCGGCCGTCGCTGTGGAAAAGGCCGAACAGAACCCGGTATACTACAACATGCTGGCTCANATCNNCTCANGTGACGCACTGTCGGAACACAGGAAAATAAACTATAG]

[+] EMBL BX468191             [CAGAATCGGCACGATGGCAGCAGCGAGGCAAACACACGCTAGCAAGCCAGCTTTCCGATTCATCAATCAATTCTACTGCCCAAACATGAAATCGTTTCAAATCGCCACCCTAACCGTGCTGCTGGTGCTGTTGGCCGGTACCGCATCGGCCAAGAAAGCGTCCACCATCTTCGGCATGCCGCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTTCCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCTCTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTCCGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCAGTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGCTAACACTTCGCCGTGCAACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCCTCGACGAGTTCCGCAAGTACGTCGACTCGAACATGAACTCGCTCATCGCGGCCGTCGCTGTGGAAAAGGCCGAACAGAACCCGGTATACTACAACATGCTGGCTCANATCNNCTCANGTGACGCACTGTCGGAACACAGGAAAATAAACTATAG]




>consensus_906#0
CAGAATCGGCACGATGGCAGCAGCGAGGCAAACACACGCTAGCAAGCCAGCTTTCCGATT
CATCAATCAATTCTACTGCCCAAACATGAAATCGTTTCAAATCGCCACCCTAACCGTGCT
GCTGGTGCTGTTGGCCGGTACCGCATCGGCCAAGAAAGCGTCCACCATCTTCGGCATGCC
GCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTT
CCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCT
CTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTC
CGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCA
GTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGC
TAACACTTCGCCGTGCAACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCCT
CGACGAGTTCCGCAAGTACGTCGACTCGAACATGAACTCGCTCATCGCGGCCGTCGCTGT
GGAAAAGGCCGAACAGAACCCGGTATACTACAACATGCTGGCTCANATCNNCTCANGTGA
CGCACTGTCGGAACACAGGAAAATAAACTATAG

consensusID : consensus_906#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence

                              [GTCCACCATCTTCGGCATGCCGCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTTCCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCTCTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTCCGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCAGTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGCTAACACTTTCGCCGTGCCACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCCTCGACGAGTCCCGCAAGTACGTTGACTCGAACATGAACTCGCTCANCGCGGCCGTCGCTGTGGAAAAGGCCGAACAGANNCCGGTATACTACACATGCTGCTCACAACTAAGGT]

[+] EMBL BX619388             [GTCCACCATCTTCGGCATGCCGCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTTCCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCTCTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTCCGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCAGTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGCTAACACTTTCGCCGTGCCACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCCTCGACGAGTCCCGCAAGTACGTTGACTCGAACATGAACTCGCTCANCGCGGCCGTCGCTGTGGAAAAGGCCGAACAGANNCCGGTATACTACACATGCTGCTCACAACTAAGGT]




>consensus_906#1
GTCCACCATCTTCGGCATGCCGCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCAT
CGTGTCCGACTTTCTGCAGTTCCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAAT
CCCAGAGGAACGGTTCCCGCTCTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCA
ATGCTTCGTGCGCTGCCTGTCCGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGA
TATCGACCGGCACTACCTGCAGTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAA
GGCCGAGCAGTGTCTGGCCGCTAACACTTTCGCCGTGCCACGATCCGTGCGAGGCTGCGT
ACAAGCAGGAGCTCTGCTTCCTCGACGAGTCCCGCAAGTACGTTGACTCGAACATGAACT
CGCTCANCGCGGCCGTCGCTGTGGAAAAGGCCGAACAGANNCCGGTATACTACACATGCT
GCTCACAACTAAGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_906#0      CAGAATCGGCACGATGGCAGCAGCGAGGCAAACACACGCTAGCAAGCCAGCTTTCCGATT 60
consensus_906#1      ------------------------------------------------------------
                                                                                 

consensus_906#0      CATCAATCAATTCTACTGCCCAAACATGAAATCGTTTCAAATCGCCACCCTAACCGTGCT 120
consensus_906#1      ------------------------------------------------------------
                                                                                 

consensus_906#0      GCTGGTGCTGTTGGCCGGTACCGCATCGGCCAAGAAAGCGTCCACCATCTTCGGCATGCC 180
consensus_906#1      ---------------------------------------GTCCACCATCTTCGGCATGCC 21
                                                            *********************

consensus_906#0      GCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTT 240
consensus_906#1      GCTGCAGCAGGATCCAGTGCCCGCCACCTCCACCTTCATCGTGTCCGACTTTCTGCAGTT 81
                     ************************************************************

consensus_906#0      CCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCT 300
consensus_906#1      CCTGCAAACGGCCGTGACCTGCTTCAACAAGCTGCGAATCCCAGAGGAACGGTTCCCGCT 141
                     ************************************************************

consensus_906#0      CTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTC 360
consensus_906#1      CTACCTGGCCGGCGTGTTCCCGAACTGTCCGGAAACGCAATGCTTCGTGCGCTGCCTGTC 201
                     ************************************************************

consensus_906#0      CGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCA 420
consensus_906#1      CGCCAACCTGAACCTGTACTGTGACGAAACGGGCTCGGATATCGACCGGCACTACCTGCA 261
                     ************************************************************

consensus_906#0      GTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGC 480
consensus_906#1      GTACGGGCTGGGCCAGGACTACAACTGCTTCCGCCAGAAGGCCGAGCAGTGTCTGGCCGC 321
                     ************************************************************

consensus_906#0      TAACACTT-CGCCGTGCAACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCC 539
consensus_906#1      TAACACTTTCGCCGTGCCACGATCCGTGCGAGGCTGCGTACAAGCAGGAGCTCTGCTTCC 381
                     ******** ******** ******************************************

consensus_906#0      TCGACGAGTTCCGCAAGTACGTCGACTCGAACATGAACTCGCTCATCGCGGCCGTCGCTG 599
consensus_906#1      TCGACGAGTCCCGCAAGTACGTTGACTCGAACATGAACTCGCTCANCGCGGCCGTCGCTG 441
                     ********* ************ ********************** **************

consensus_906#0      TGGAAAAGGCCGAACAGAACCCGGTATACTACAACATGCTGGCTCANATCNNCTCANGTG 659
consensus_906#1      TGGAAAAGGCCGAACAGANNCCGGTATACTACA-CATGCTG-CTCAC---AACTAAGGT- 495
                     ******************  ************* ******* ****      ** * ** 

consensus_906#0      ACGCACTGTCGGAACACAGGAAAATAAACTATAG 693
consensus_906#1      ----------------------------------