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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1016 fasta sequence
[CCCAAAACCGGGCACATGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGACATTATTCCATCGCTTGGCTGTATTTACAGGATGATTTTATCAACTTCTAGCGCCTAAAAGATCAACACTTTAAATG-AGGCGTAGTTTTAACGCGCATAATAATCACCGGACCTTTCTATCTAGCAAAAAACAGGTCAGGTGTAAGGATAAATGATGATGGCTTTGCCGGAGACCAGCCCGTGGTGGGTAACACGGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCGGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGACTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG-GGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCAACAACACAACGGCCGTAAAACCCAGTGGGCCAACAGTTCTCGAGGGATTCCGCAGTTTTTTT]
[-] EMBL CNS09K3T [CCCAAAACCGGGCACATGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGACATTATTCCATCGCTTGGCTGTATTTACAGGATGATTTTATCAACTTCTAGCGCCTAAAAGATCAACACTTTAAATG AGGCGTAGTTTTAACGCGCATAATAATCACCGGACCTTTCTATCTAGCAAAAAACAGGTCAGGTGTAAGGATAAATGATGATGGCTTTGCCGGAGACCAGCCCGTGGTGGGTAACACGGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCGGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGACTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTGGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG GGGGATGCACCGATTTCTGTGGAA CTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCAACAACACAACG ]
[+] EMBL CNS09K3U [ ATTATTCCATCGCTTGGCTGTATTTACAGGATGATTTTATCAACTTCTAGCGCCTAAAAGATCAACACTTTAAATG AGGCGTAGTTTTAACGCGCATAAAAATCACCGGACCTTTCTATCTAGCAAAAAACAGGTCAGGTGTAAGGATAAATGATGATGGCTTTGCCGGAGACCAGCCCGTGGTGGGTAACACGGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCGGCACGTGCCTCCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGACTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTGGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTTTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTTCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGA CTGCGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAAAAATACCAATCGCTCGCGGATCGCTTCCCCCACCAACAACACAACGGCCGTAAAACCCAGTGGGCCAACAGTTCTCGAGGGATTCCGCAGTTTTTTT]
[-] EMBL BX612358 [ TCAACACTTTAAATGAAAGCGTAGTTTTAACGCGGACAATAATCACTGGACCTTTCTATCTAGCAAAAAACAGGTCTAGTGTAAGGATAATTGATGATGGCTTTACCGGAGACCAGCCCGTGGTGGATAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCGGCACGGGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCAACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAGCCGATCGCCGTCGCAATCATCATGTAATTGGCGATCTTGATTCGCACCT ATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGAATTTGTACCGCTTCATGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG GGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGAAATTGCAATTTACGGCCCAAATT ]
[-] EMBL BM603357 [ GGATAATTGATGATGGCTTTGCCGGAGACCAGCCTGTGGTGGGTAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTAACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG GGGGATGTACCGATTTCTGTGGAAGCTACGCACGCAAATATATAATGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACcgg ]
[-] EMBL BM650582 [ CAGGTTCATCTGGGCGACGGACTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGGATTTGTATCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG GGGGATGCACCGATTTCTGTGGAAGCAGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCcgg ]
[-] EMBL BM595891 [ TGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGGATTTGTATCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTG GGGGATGCACCGATTTCTGTGGAAGCAGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCAACAACcgg ]
consensusID : consensus_9115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 696 fasta sequence
[GGCCTTTCTTGTTGTAATTCCTTGGTCGCCAAGTTCAAGGGTTCAATCTGGGCCACCGGANTTTCGCCACCGTTCTGCCGCCTTTCTTCCCCACTGAATCACCCAATTGACCGAATGCAAGCCCGATTCGCCGGTCGGCAAATCAATCCAATGGTAAATTGGGCGGATCTTGGATTCGCAACCCGTGATTNCCCGGACCCCGTTTCCAATCTTTCCTCCCTGGCTGACAAAGTTTAGGAACTTCCTCGATGGATTTGTACCGCCTTCATGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGTAACCTCGG]
[-] EMBL AL932760 [GGCCTTTCTTGTTGTAATTCCTTGGTCGCCAAGTTCAAGGGTTCAATCTGGGCCACCGGANTTTCGCCACCGTTCTGCCGCCTTTCTTCCCCACTGAATCACCCAATTGACCGAATGCAAGCCCGATTCGCCGGTCGGCAAATCAATCCAATGGTAAATTGGGCGGATCTTGGATTCGCAACCCGTGATTNCCCGGACCCCGTTTCCAATCTTTCCTCCCTGGCTGACAAAGTTTAGGAACTTCCTCGATGGATTTGTACCGCCTTCATGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCC AATTGCTATTTA TTACTTTTGTAAGAGAAATACCAATCGCTCGCGGTAACCTCGG]
[-] EMBL AL933598 [ GTACCG CTTCATGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACC ATCGCTtnngcct ]
[-] EMBL BX614065 [ TCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCT ]
[-] EMBL BX614066 [ TCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAA ]
consensusID : consensus_9115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence
[CACTTTAAAATGAGGCGTAGTTTTAACGCGCACAATAATCACCGGACCTTTCTTTCTAGCAAAAAACAGGTCAGGTGTAAGGATAATTGATGATGGCTTTGCCGGAGACCAGCCTGTGGTGGGTAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTAACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCGG]
[-] EMBL BM653189 [CACTTTAAAATGAGGCGTAGTTTTAACGCGCACAATAATCACCGGACCTTTCTTTCTAGCAAAAAACAGGTCAGGTGTAAGGATAATTGATGATGGCTTTGCCGGAGACCAGCCTGTGGTGGGTAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTAACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCCCCCACCGG]
consensusID : consensus_9115#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[GCCGTCAGCGACGCTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGATTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTAATTCGCACTTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCTCCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGTCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCGGACGCGTGGGCGG]
[-] EMBL BM578555 [GCCGTCAGCGACGCTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGATTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTAATTCGCACTTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCTCCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCAATTTACGTCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGATCGCTTCGGACGCGTGGGCGG]
consensusID : consensus_9115#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 614 fasta sequence
[CTTTGCCGGAGACCAGCCTGTGGTGGGTAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTAACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGTACCGATTTCTGTGGAAGCTCGGACGCGTGGGCGGACGCGTGGGCGG]
[-] EMBL BM584347 [CTTTGCCGGAGACCAGCCTGTGGTGGGTAACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTTCGTAGTCAGCACGTGCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGCTCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATCATCATGTAGTTGGCGATCTTGATTCGCACCTGATTCCGGACCCGTTCCATCTTCTCCTGGCTAACAAAGTTAGGAACTTCCTCGATGGATTTGTACCGCTTCATAAAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACTTGGTTCGAGCTGAAGCTTCGACCGGCTGCGGCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGTACCGATTTCTGTGGAAGCTCGGACGCGTGGGCGGACGCGTGGGCGG]
consensusID : consensus_9115#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[CGCCGGTCGCAATCATCATGTAATTGGCGATCTTGATTCGCACCNTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTGCCTCGATGGATTTGTACCGCGTTCAGTGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGNNCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCAGGATCGCTTCCCCCACCAACAACACAACAGTCGTGAAACAACACCTCGGG]
[-] EMBL AL930169 [CGCCGGTCGCAATCATCATGTAATTGGCGATCTTGATTCGCACCNTGATTCCGGACCCGTTCCATCTTCTCCTGGCTGACAAAGTTAGGAACTTGCCTCGATGGATTTGTACCGCGTTCAGTGAAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGATCCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACCTGGTTGGAACTGAAGCTTCGACCGGCTGCGNNCAGTGCTACGTGATCGTAGCAGCGTCGACGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCATCGCGGAGCTGGGGGATGCACCGATTTCTGTGGAAGCTGCGCACGCAAATATATAAAGCTTTCGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCAATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCAGGATCGCTTCCCCCACCAACAACACAACAGTCGTGAAACAACACCTCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9115#1 ------------------------------------------------------------
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 ------------------------------------------------------------
consensus_9115#0 CCCAAAACCGGGCACATGTGCCTTTTTTTTTTTTTTTTTTTTTTTTTTGACATTATTCCA 60
consensus_9115#2 ------------------------------------------------------------
consensus_9115#4 ------------------------------------------------------------
consensus_9115#1 ------------------------------------------------------------
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 ------------------------------------------------------------
consensus_9115#0 TCGCTTGGCTGTATTTACAGGATGATTTTATCAACTTCTAGCGCCTAAAAGATCAACACT 120
consensus_9115#2 -------------------------------------------------------CACTT 5
consensus_9115#4 ------------------------------------------------------------
consensus_9115#1 ------------------------------------------------------------
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 ------------------------------------------------------------
consensus_9115#0 TTAAATGAGGCGTAGTTTTAACGCGCATAATAATCACCGGACCTTTCTATCTAGCAAAAA 180
consensus_9115#2 TAAAATGAGGCGTAGTTTTAACGCGCACAATAATCACCGGACCTTTCTTTCTAGCAAAAA 65
consensus_9115#4 ------------------------------------------------------------
consensus_9115#1 ------------------------------------------------------------
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 ------------------------------------------------------------
consensus_9115#0 ACAGGTCAGGTGTAAGGATAAATGATGATGGCTTTGCCGGAGACCAGCCCGTGGTGGGTA 240
consensus_9115#2 ACAGGTCAGGTGTAAGGATAATTGATGATGGCTTTGCCGGAGACCAGCCTGTGGTGGGTA 125
consensus_9115#4 -------------------------------CTTTGCCGGAGACCAGCCTGTGGTGGGTA 29
consensus_9115#1 -------------------------GGCCTTTCTTGTTGTAATTC-CTTGGTCGCCAAGT 34
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 -----------------------------GCCGTCAGCGACGCTT-CGTAGTCAGCACGT 30
consensus_9115#0 ACACGGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTT-CGTAGTCGGCACGT 299
consensus_9115#2 ACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTT-CGTAGTCAGCACGT 184
consensus_9115#4 ACACAGCATTTTACTTCTTCTTCGCTTCCGCCGCCAGCGACGCTTTCGTAGTCAGCACGT 89
consensus_9115#1 TCAAGGGTTCAATCTGGGCCACCGGANTTTCGCCACCGTTCTGCCGCCTTTCTTCCCCAC 94
consensus_9115#5 ------------------------------------------------------------
consensus_9115#3 GCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGATTCATCTGGGCGACGGATTCGCCCCGC 90
consensus_9115#0 GCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGACTCGCCCCGC 359
consensus_9115#2 GCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGC 244
consensus_9115#4 GCCTTCTCGTTGTACTCCTTGTGCCAGTCCAGGTTCATCTGGGCGACGGATTCGCCCCGC 149
consensus_9115#1 TGAATCACCCAATTG--ACCGAATGCAAGCCCGATTCG-CCGGTCGGCAAATCAATCCAA 151
consensus_9115#5 ------------------------------------CG-CCGGTCG------CAATC--A 15
consensus_9115#3 TCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATC--A 148
consensus_9115#0 TCCTGCGCCTTCTTGCCACTGATCACCATGACGATGCAACCGATCGCGGTCGCAATC--A 417
consensus_9115#2 TCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATC--A 302
consensus_9115#4 TCCTGCGCCTTCTTGCCACTGATCACCATGACGATACAACCGATCGCGGTCGCAATC--A 207
* *** *** ***** *
consensus_9115#1 TGGTAAATTGGGCGGATCTTGGATTCGCAACCCGTGATTNCCCGGACCCCGTTTCCAATC 211
consensus_9115#5 TCATGTAATTGGCG-ATCTTG-ATTCGCA--CCNTGATTCC---GGACCCGTTCC--ATC 66
consensus_9115#3 TCATGTAGTTGGCG-ATCTTA-ATTCGCA---CTTGATTCC---GGACCCGTTCC--ATC 198
consensus_9115#0 TCATGTAGTTGGCG-ATCTTG-ATTCGCA---CCTGATTCC---GGACCCGTTCC--ATC 467
consensus_9115#2 TCATGTAGTTGGCG-ATCTTG-ATTCGCA---CCTGATTCC---GGACCCGTTCC--ATC 352
consensus_9115#4 TCATGTAGTTGGCG-ATCTTG-ATTCGCA---CCTGATTCC---GGACCCGTTCC--ATC 257
* * * * **** ***** ******* * ***** * * ****** * ***
consensus_9115#1 TTTCCTCCCTGGCTGACAAAGTTTAGGAACTTCCTCGATGGATTTGTACCGCCTTCA-TG 270
consensus_9115#5 TTCTC---CTGGCTGACAAAGTTAGGAACTTGCCTCGATGGATTTGTACCGCGTTCAGTG 123
consensus_9115#3 TTCTC---CTGGCTGACAAAGTT-AGGAACTTCCTCGATGGATTTGTACCGC-TTCA-TA 252
consensus_9115#0 TTCTC---CTGGCTGACAAAGTT-AGGAACTTCCTCGATGGATTTGTACCGC-TTCA-TA 521
consensus_9115#2 TTCTC---CTGGCTAACAAAGTT-AGGAACTTCCTCGATGGATTTGTACCGC-TTCA-TA 406
consensus_9115#4 TTCTC---CTGGCTAACAAAGTT-AGGAACTTCCTCGATGGATTTGTACCGC-TTCA-TA 311
** * ****** ******** * * * ******************** **** *
consensus_9115#1 AAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 330
consensus_9115#5 AAGACCAGCATACGCTTCTCCAGCCCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 183
consensus_9115#3 AAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 312
consensus_9115#0 AAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 581
consensus_9115#2 AAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 466
consensus_9115#4 AAGACCAGCATACGCTTCTCCAGCGCGTTCGGTGTGTGGGTGTGCGTGTTGATGCTCGAT 371
************************ ***********************************
consensus_9115#1 CCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACC 390
consensus_9115#5 CCATTGCTTCCACCGGCGGACGGTGTTGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACC 243
consensus_9115#3 CCATTGCTTCCTCCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACT 372
consensus_9115#0 CCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACC 641
consensus_9115#2 CCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACT 526
consensus_9115#4 CCATTGCTTCCACCGGCGGACGGAGTCGATTTCGGTGGCTGCTGGGGCTTTGGTTCGACT 431
*********** *********** ** ********************************
consensus_9115#1 TGGTTGGAACTGAAGCTTCGACCGGCTGCGGC-AGTGCTACGTGATCGTAGCAGCGTCGA 449
consensus_9115#5 TGGTTGGAACTGAAGCTTCGACCGGCTGCGNNCAGTGCTACGTGATCGTAGCAGCGTCGA 303
consensus_9115#3 TGGTTCGAGCTGAAGCTTCGACCGGCTGCGGC-AGTGCTACGTGATCGTAGCAGCGTCGA 431
consensus_9115#0 TGGTTCGAGCTGAAGCTTCGACCGGCTGCGGC-AGTGCTACGTGATCGTAGCAGCGTCGA 700
consensus_9115#2 TGGTTCGAGCTGAAGCTTCGACCGGCTGCGGC-AGTGCTACGTGATCGTAGCAGCGTCGA 585
consensus_9115#4 TGGTTCGAGCTGAAGCTTCGACCGGCTGCGGC-AGTGCTACGTGATCGTAGCAGCGTCGA 490
***** ** ********************* ***************************
consensus_9115#1 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 509
consensus_9115#5 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 363
consensus_9115#3 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 491
consensus_9115#0 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 760
consensus_9115#2 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 645
consensus_9115#4 CGTTCGAGCCACGCCGGATGATGTACGTGCGATTTCGCATGCTGTGCGCAAAAAATTCAT 550
************************************************************
consensus_9115#1 CGCGGAGCTGGGGGATGCACCGATTTCT-GTGGAAGCTGCGCACGCAAATATATAAAGCT 568
consensus_9115#5 CGCGGAGCTGGGGGATGCACCGATTTCT-GTGGAAGCTGCGCACGCAAATATATAAAGCT 422
consensus_9115#3 CGCGGAGCTGGGGGATGCACCGATTTCT-GTGGAAGCTGCGCACGCAAATATATAAAGCT 550
consensus_9115#0 CGCGGAGCTGGGGGATGCACCGATTTCT-GTGGAAGCTGCGCACGCAAATATATAAAGCT 819
consensus_9115#2 CTTTTG--TAAGAGAAATACCAATCGCTCGCGGA--TCGCTTCCCCCACCGG-------- 693
consensus_9115#4 CGCGGAGCTGGGGGATGTACCGATTTCTGTGGAAGCTCGGACGCGTGGGCGGACGCGTGG 610
* * * ** *** ** ** * * * *
consensus_9115#1 TTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCA 628
consensus_9115#5 TTCG-TTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTAAAGTAATTGCA 481
consensus_9115#3 TTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCA 610
consensus_9115#0 TTCGGTTGCGTTTAGTGGAAGCGTTTATGCGCTTCACTTAGTGAACTTGAAGTAATTGCA 879
consensus_9115#2 ------------------------------------------------------------
consensus_9115#4 GCGG-------------------------------------------------------- 614
consensus_9115#1 ATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGG- 687
consensus_9115#5 ATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCAG- 540
consensus_9115#3 ATTTACGTCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGGA 670
consensus_9115#0 ATTTACGGCCCAAATTGCTATTTATTTACTTTTGTAAGAGAAATACCAATCGCTCGCGG- 938
consensus_9115#2 ------------------------------------------------------------
consensus_9115#4 ------------------------------------------------------------
consensus_9115#1 TAACCTCGG--------------------------------------------------- 696
consensus_9115#5 GATCGCTTCCCCCACCAACAACACAACAGTCGTGAAACAACACCTCGGG----------- 589
consensus_9115#3 TCGCTTCGGACGCGTGGGCGG--------------------------------------- 691
consensus_9115#0 -ATCGCTTCCCCCACCAACAACACAACGGCCGTAAAACCCAGTGGGCCAACAGTTCTCGA 997
consensus_9115#2 ------------------------------------------------------------
consensus_9115#4 ------------------------------------------------------------
consensus_9115#1 -------------------
consensus_9115#5 -------------------
consensus_9115#3 -------------------
consensus_9115#0 GGGATTCCGCAGTTTTTTT 1016
consensus_9115#2 -------------------
consensus_9115#4 -------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||