These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 610 fasta sequence [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG] [+] EMBL BM596339 [CCGCTCCGCACGAAAACGTGGTTTCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGTGCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATAAGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTTGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAATTTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTTTGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTGGGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTTACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGTCACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAAAATAATTG] consensusID : consensus_914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG] [+] EMBL AGA281865 [GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTTGTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTGTAGTATCCCTTTTCGAACTGACACCCAGTGCCCGCAGCGTGAAGCAACGTGCTCTCGGATTTGGACAAATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGACGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCTTTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_914#0 -------------------------------------------------------CCGCT 5 consensus_914#1 GCTGCTGCGGTGTGGTCAAATTTTGGGTGTGTATGTGTGCGTGTGTGTATGTGTTGTGTT 60 * * consensus_914#0 CCGCACGAAAACGTGGTT--TCGTGAAGGAAACAAAATATTTATCCGTGCTAAAATCCGT 63 consensus_914#1 GTGCACGGTCCTTCGCCCAGCAGTGTCGGGGTCGGTTTGGTGGTCGGTG-TAGTATCCCT 119 ***** * *** ** * * * ** *** ** **** * consensus_914#0 GCTCACCAGCTTCGACCAGCTCTATTAGCCGCGTGGCACGCAGTTTTACGATACACGATA 123 consensus_914#1 TTTCGA-ACTGACACCCAGTGCCCGCAGC-GTGAAGCAACGTGCTCTCGGATTTG-GACA 176 ** * * **** * *** * * *** * * * *** ** * consensus_914#0 AGCGCCAGCCTGCGACCGAACATGGAATACGGTGCATTAGCCTAGCGCCCGGCTT-GTGA 182 consensus_914#1 AATGGAATGCCTTTTTCTCACACGCTTTTTATGATTTTTGCTTCTCCATCTACACAGTGA 236 * * * * * *** * * ** ** * * * * **** consensus_914#0 CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 242 consensus_914#1 CGGCGAAGAAGTGGCAGGGGTGAACGGCGCCGGGGGTGTTGGCCGGTAAAGTTGTTTTCT 296 ************************************************************ consensus_914#0 TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTGTGATTGTGACCACCCGAAT 302 consensus_914#1 TTGTGAACATTTTGGTTTTTATTTTTTGGGCAATTATTTTG------------------- 337 ***************************************** consensus_914#0 TTGCGGTGTGCGAAGAAGAAGAAGAAGCAGAACGGCGTGCTAACCGGAAGCTGAGCTTTT 362 consensus_914#1 ------------------------------------------------------------ consensus_914#0 TGTGAAAGGAAGCGCAAGTTTTACACACACAGACACGGCAGCGCGCGCTTGGGGCACTTG 422 consensus_914#1 ------------------------------------------------------------ consensus_914#0 GGTCGCGTTGCGCCGAGCGGGTTTGTTCAAAGTTTTGTGTGTTGTGTGTGCGTTATTTTT 482 consensus_914#1 ------------------------------------------------------------ consensus_914#0 ACTCATTTACAAATTAACTGAGAGTTTTGGTGTGGAAGCAAAACATACGCGAAAACTCGT 542 consensus_914#1 ------------------------------------------------------------ consensus_914#0 CACGTCAAACCTCGAAGCTTGCGCGATCCACCTAAAGAGAGCCGTTTCCGCTAATCGGAA 602 consensus_914#1 ------------------------------------------------------------ consensus_914#0 AATAATTG 610 consensus_914#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||