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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 855 fasta sequence
[GCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCAACATGTCGGATCGGTCCACGCTGCCCCGGCTATCTACCAGCATTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCATCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTTTGTACGATCTAGATTAAAACTTGTTAGTAAAAATAAATTGCATT]
[+] EMBL AF043436 [GCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCAACATGTCGGATCGGTCCACGCTGCCCCGGCTATCTACCAGCATTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCATCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTTTGTACGATCTAGATTAAAACTTGTTAGTAAAAATAAATTGCATT]
consensusID : consensus_9154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 831 fasta sequence
[GGCTCGAGCAGATCGCCCCGACGGTTAATCTCAACCAGTAAACAATCCTGCTCCAATAATGGC-GTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCCCATCATGGATCGATCGCTACGTCTCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCATGCCGCTCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCA-GCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGT-CCATGACGAGCACACCGGAGACA-TCAAGAGCCAGCACGAAACTCGC-CACGGAGACGAAGTCCACGGACAGTACTCGCTG-TTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGG-C-TGTGA-AGATCGCTCA-GCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGCGTTAATTTAAAACTAGATTAATGTGTTGTTTAGGTTGAATGTTAATAAAATAAGTGCAAACATTTCAATTTC]
[+] EMBL AL696854 [GGCTCGAGCAGATCGCCCCGACGGTTAATCTCAACCAGTAAACAATCCTGCTCCAATAATGGCTGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCTCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCACGCCGC CCGGCTATCTA CAG ACTCGG CCCGGCTATCTACCAGGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTACCATGACGAGCACAACGGAGACACTCAAGAGCCAGAACGAAACTCGCNCACGGAGACGAAGTCCACGGACAGTACTCGCTGNTGGGACTCCGACGGTCACCAGGGCATCGTCGACTACCATGCTGATCATCA ACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGACGTGTGACAGATCGCTCAGGGCCGTG ]
[+] EMBL AF043443 [ TGCTCCAATAATGGC GTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCCCATCATGGATCGATCGCTACGTCTCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCATGCCGCTCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCA GCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGT CCATGACGAGCACACCGGAGACA TCAAGAGCCAGCACGAAACTCGC CACGGAGACGAAGTCCACGGACAGTACTCGCTG TTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGG C TGTGA AGATCGCTCA GCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGCGTTAATTTAAAACTAGATTAATGTGTTGTTTAGGTTGAATGTTAATAAAATAAGTGCAAACATTTCA ]
[+] EMBL AF043434 [ TCCAATAATGGC GTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCCCATCATGGATCGATCGCTACGTCTCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCATGCCGCTCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCA GCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGT CCATGACGAGCACACCGGAGACA TCAAGAGCCAGCACGAAACTCGC CACGGAGACGAAGTCCACGGACAGTACTCGCTG TTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGG C TGTGA AGATCGCTCA TCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATTGTCCATGGACCGAGCCATCTGAGTCATCATCATTACTAAGCGTTAATTTAAAACTAGATTAATGTGTTGTTTAGGTTGAATGTTAATAAAATAAGTGCAAACATTTCAATTTC]
consensusID : consensus_9154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 801 fasta sequence
[TGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCATCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATTGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCACGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAATAAGGACTTCAGTTACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGC]
[+] EMBL AF043439 [TGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCATCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATTGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCACGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAATAAGGACTTCAGTTACAAAA ]
[+] EMBL AF043437 [ CGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCTCCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCACGCCGCCCCGGCTATCTACCAGCACTCTGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGATCGCGCACTATGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAGTAAAGACTTCAGTTACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGC]
consensusID : consensus_9154#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 798 fasta sequence
[CAGATCGGCCNGAGGTTTGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCACGCCGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAACAAGGTCTTCAGCAACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGCGATT]
[+] EMBL AL697054 [CAGATCGGCCNGAGGTTANCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCG ]
[+] EMBL AF043441 [ TGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCTGTCAGCGCTGGTCTGCTTCCTGTGGCCAATCATGGATCGATCGCTACGTCTCACTCCTCCATCCAGCACCATGCTGCTCCCGCCATCCATCATGTCGGATCGATCCACGCCGCCCCGGCTATCTACCAGCACTCGGCCCCGACTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTTCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAACAAGGTCTTCAGCAACAAACCAGATAGTTTATAAAAGCATAAATAAAAAACGATT]
[+] EMBL AF043438 [ TGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCACGCCGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGATGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCCTCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAACAAGGTCTTCAGCAACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGCGA ]
[+] EMBL BX619119 [ TGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAAGTGATTGCCCAGCNCGTGCATGTGTNCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCANC NNATGCTG CCCGATCGCGCACTACTCCG CACGATCGCGCACC CGCTGCT CGATCGCGCACTACGCTGGCCNGATCGCGCANCACGCTGCTTCGAat ]
[+] EMBL AF043435 [ AAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATCGGTCCACGCCGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGATGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCCTCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGTCCAGCTATGCCCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAACAAGGTCTTCAGCAACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGCGA ]
consensusID : consensus_9154#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 791 fasta sequence
[AATTGCCGAGGTTAAC-ATCCTGCT-CAATAATGGCGTTC-AATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATACCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCTGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACTGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCTACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCTGCTCAGCCCTGTGCACAAGGTGATTGCCCAGCCCGNGCATGTGNTCCACGACTATAGCCCATAGCTACCAGTAGCTCACGCCACCTGTCCAGCACCACCATG-TCCCCCGATACGCGCACTAATCCGCACCGATCGCGCACCACGCTGCTCCGATACGCGCCACTANGCTG-CCCGATCGCGCA-CACGCTGCTCCGCATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTTTGTACGATCTAGATTAAAACTTGTTAGTAAAAATAAATTACATT]
[+] EMBL AL931818 [AATTGCCGAGGTTAAC ATCCTGCT CAATAATGGCGTTC AATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATACCAGCACCATGCTGCTCCCACTATCCAACATGTCGGATCTGGTCCACGCTGCCCCAGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGACTGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCTACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCTGCTCAGCCCTGTGCACAAGGTGATTGCCCAGCCCGNGCATGTGNTCCACGACTATAGCCCATAGCTACCAGTAGCTCACGCCACCTGTCCAGCACCACCATG TCCCCCGATACGCGCACTAATCCGCACCGATCGCGCACCACGCTGCTCCGATACGCGCCACTANGCTG CCCGATCGCGCA CACGCTGCTCCGCATCGCGCACTCAACCTCCAGCATCGTCCAT ]
[+] EMBL AF043442 [ taAACAATCCTCCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCATCATGGATCGATCGCTACGTCTCACTCCACCAT CCAGCACCATGCTGCTCCCGCTATCCATCATGTCGGATC GGTCCACGCCGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGAC GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATC GCTCAGCCC GTGCACAAGGTGATCGCCCAGAACGTGCATGTG TCCA G CTAT GCCCAT GCT CCAGTAGCTCACGCCA CTGTCCAGCACCACCATGCTGCCCCGAT CGCGCACTACTCCGCACCGATCGCGCACCACGCTGCTCCGAT CGCG CACTACGCTGCCCCGATCGCGCACCACGCTGCTCCG ATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTTTGTACGATCTAGATTAAAACTTGTTAGTAAAAATAAATTACATT]
consensusID : consensus_9154#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 779 fasta sequence
[CGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCAACATGTCGGATCGGTCCACGCGCTCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGATGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCACCATTACTAAGCGTTAATTCAAAGCTAGTTTAATGTGCTGTTTAGGTTGAATGTTAATAAAATAAGTGCAAACA]
[+] EMBL AF043440 [CGCTCCAATAATGGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCCTGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATCCAGCACCATGCTGCTCCCGCTATCCAACATGTCGGATCGGTCCACGCGCTCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCTCAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTACTCCGTCCATGATGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGACGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTACCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAAGATCGCTCAGCCCGTGCACAAGGTGATCGCCCAGCCCGTGCATGTGCATGCTCCAGTAGCTCACGCCACTGTCCAGCACCACCATGCTGCCCCGATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGATCGCGCACCACGCTGCTCCGATCGCGCACCACGCTGCTCCGATCGCGCACTCAACCTCCAGCATCGTCCATGGACCGAGCCATCTGAGCCATCACCATTACTAAGCGTTAATTCAAAGCTAGTTTAATGTGCTGTTTAGGTTGAATGTTAATAAAATAAGTGCAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9154#1 GGCTCGAGCAGATCGCCCCGACGGTTAATCTCAACCAGTAAACAATCCTGCTCCAATAAT 60
consensus_9154#5 ------------------------------------------------CGCTCCAATAAT 12
consensus_9154#0 -------------------------------------------------GCTCCAATAAT 11
consensus_9154#4 ----------------------------AATTGCCGAGGTTAACATCCTGCTC-AATAAT 31
consensus_9154#2 ------------------------------------------------TGCTCCAATAAT 12
consensus_9154#3 -------------------------------CAGATCGGCCNGAGGTTTGCTCCAATAAT 29
**** ******
consensus_9154#1 GGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 120
consensus_9154#5 GGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 72
consensus_9154#0 GGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 71
consensus_9154#4 GGCGTTCAA-TTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 90
consensus_9154#2 GGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 72
consensus_9154#3 GGCGTTCAAATTCGTTCTGCTCGCTACTCTGGTAGCTGCCGCCAGCGCTGGTCTGCTTCC 89
********* **************************************************
consensus_9154#1 TGTGGCCCATCATGGATCGATCGCTACGTCTCACTCCACCAT-CCAGCACCATGCTGCTC 179
consensus_9154#5 TGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCAT-CCAGCACCATGCTGCTC 131
consensus_9154#0 TGTGGCTCACCATGGATCGATCGCCACGTCGCACTCCACCAT-CCAGCACCATGCTGCTC 130
consensus_9154#4 TGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCATACCAGCACCATGCTGCTC 150
consensus_9154#2 TGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCAT-CCAGCACCATGCTGCTC 131
consensus_9154#3 TGTGGCTCACCATGGATCGATCGCTACGTCGCACTCCACCAT-CCAGCACCATGCTGCTC 148
****** ** ************** ***** *********** *****************
consensus_9154#1 CCGCTATCCATCATGTCGGATC-GGTCCATGCCGCTCCGGCTATCTACCAGCA------- 231
consensus_9154#5 CCGCTATCCAACATGTCGGATC-GGTCCACG----------------------------- 161
consensus_9154#0 CCGCTATCCAACATGTCGGATC-GGTCCACGCTGCCCCGGCTATCTACCAGCATTCGGCC 189
consensus_9154#4 CCACTATCCAACATGTCGGATCTGGTCCACGCTGCCCCAGCTATCTACCAGCA------- 203
consensus_9154#2 CCACTATCCAACATGTCGGATC-GGTCCACGCTGCCCCAGCTATCTACCAGCA------- 183
consensus_9154#3 CCGCTATCCATCATGTCGGATC-GGTCCACGCCGCCCC---------------------- 185
** ******* *********** ****** *
consensus_9154#1 ------------------------------------------------------------
consensus_9154#5 ------------------------------------------------------------
consensus_9154#0 CCGGCTATCTACCAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCTAC 249
consensus_9154#4 ------------------------------------------------------------
consensus_9154#2 ------------------------------------------------------------
consensus_9154#3 ------------------------------------------------------------
consensus_9154#1 -----CTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCT 286
consensus_9154#5 -------CGCTCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCT 214
consensus_9154#0 CAGCACTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCT 309
consensus_9154#4 -----------------------------CTCGGCCCCGGCTATCGTCAAGACCATTGCT 234
consensus_9154#2 -----CTCGGCCCCGGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCT 238
consensus_9154#3 --------------GGCTATCTACCAGCACTCGGCCCCGGCTATCGTCAAGACCATTGCT 231
*******************************
consensus_9154#1 CAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 346
consensus_9154#5 CAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 274
consensus_9154#0 CAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 369
consensus_9154#4 CAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 294
consensus_9154#2 CAGCCCACGATCATCAAGTCGGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 298
consensus_9154#3 CAGCCCACGATCATCAAGTCTGTAGAGCACCACGCTCCGGCCAACTACGAGTTCTCGTAC 291
******************** ***************************************
consensus_9154#1 TCCGTCCATGAC-GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 405
consensus_9154#5 TCCGTCCATGAT-GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 333
consensus_9154#0 TCCGTCCATGAC-GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 428
consensus_9154#4 TCCGTCCATGACTGAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 354
consensus_9154#2 TCCGTCCATGAC-GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 357
consensus_9154#3 TCCGTCCATGAC-GAGCACACCGGAGACATCAAGAGCCAGCACGAAACTCGCCACGGAGA 350
*********** ***********************************************
consensus_9154#1 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTA 465
consensus_9154#5 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTA 393
consensus_9154#0 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCATCAGCGCATCGTCGACTA 488
consensus_9154#4 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCTACTA 414
consensus_9154#2 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCATCGCATCGTCGACTA 417
consensus_9154#3 CGAAGTCCACGGACAGTACTCGCTGTTGGACTCCGACGGTCACCAGCGCATCGTCGACTA 410
****************************************** ** ********* ****
consensus_9154#1 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 525
consensus_9154#5 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 453
consensus_9154#0 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 548
consensus_9154#4 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 474
consensus_9154#2 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 477
consensus_9154#3 CCATGCTGATCATCACACCGGATTCAACGCCGTCGTGCGCCGTGAGCCATCGGCTGTGAA 470
************************************************************
consensus_9154#1 GATC-GCTCAGCCC-GTGCACAAGGTGATCGCCCAGCCCGTGCATGTG-----TCCAGCT 578
consensus_9154#5 GATC-GCTCAGCCC-GTGCACAAGGTGATCGCCCAGCCCGTGCATGTGCATGCTCCAGTA 511
consensus_9154#0 GATC-GCTCAGCCC-GTGCACAAGGTGATCGCCCAGCCCGTGCATGTGT----CC---AG 599
consensus_9154#4 GATCTGCTCAGCCCTGTGCACAAGGTGATTGCCCAGCCCGNGCATGTGN----TCCACGA 530
consensus_9154#2 GATC-GCTCAGCCC-GTGCACAAGGTGATTGCCCAGCCCGTGCATGTG-----TCCAGCT 530
consensus_9154#3 GATC-GCTCAGCCC-GTGCACAAGGTGATCGCCCAGCCCGTGCATGTG-----TCCAGCT 523
**** ********* ************** ********** ******* *
consensus_9154#1 ATGC---CCAT-GCT-CCAGTAGC-TCACGC--------------CACTGTCCAGCACC- 617
consensus_9154#5 GCTCACGCCAC-TGT-CCAGCACCACCATGCTGC-CCCGATCGCGCACTACTCCGCACCG 568
consensus_9154#0 CTAT-GCCCAT-GCT-CCAGTAGC-TCACGCCAC-TGTCCAGCACCACCATGCTGCCCCG 654
consensus_9154#4 CTATAGCCCATAGCTACCAGTAGC-TCACGCCACCTGTCCAGCACCACCATGTCCCCCGA 589
consensus_9154#2 ATGC---CCAT-GCT-CCAGTAGC-TCACGCCAC-TGTCCAGCACCACCATGCTGCCCCG 583
consensus_9154#3 ATGC---CCAT-GCT-CCAGTAGC-TCACGCCAC-TGTCCAGCACCACCATGCTGCCCCG 576
*** * **** * * ** ** *** * *
consensus_9154#1 -------ACCATGCTGCCCCGATCGCGCACTACGCTGCCCCGAT-CGCGC-ACCATGCTG 668
consensus_9154#5 ATCGCGCACCATGCTGCTCCGATCGCGCACTACGCTGCCCCGAT-CGCGC-ACCACGCTG 626
consensus_9154#0 ATCGCGCACTACTCCGCACCGATCGCGCACCATGCTGCTCCGAT-CGCGC-ACTACGCTG 712
consensus_9154#4 TACGCGCACTAATCCGCACCGATCGCGCACCACGCTGCTCCGATACGCGCCACTANGCTG 649
consensus_9154#2 ATCGCGCACTACTCCGCACCGATCGCGCACCACGCTGCTCCGAT-CGCGC-ACTACGCTG 641
consensus_9154#3 ATCGCGCACTACGCTGCCCCGATCGCGCACCATGCTGCTCCGAT-CGCGC-ACTACGCTG 634
** * * ** ************ * ***** ***** ***** ** * ****
consensus_9154#1 CTCCGATCGCGCACCACGCTGCTCCG-ATCGCGCACTCAACCTCCAGCATCGTCCATGGA 727
consensus_9154#5 CTCCGATCGCGCACCACGCTGCTCCG-ATCGCGCACTCAACCTCCAGCATCGTCCATGGA 685
consensus_9154#0 CCCCGATCGCGCACCACGCTGCTCCG-ATCGCGCACTCAACCTCCAGCATCGTCCATGGA 771
consensus_9154#4 CCC-GATCGCGCAC-ACGCTGCTCCGCATCGCGCACTCAACCTCCAGCATCGTCCATGGA 707
consensus_9154#2 CCCCGATCGCGCACCACGCTGCTCCG-ATCGCGCACTCAACCTCCAGCATCGTCCATGGA 700
consensus_9154#3 CCCCGATCGCGCACCACGCTGCTCCG-ATCGCGCACTCAACCTCCAGCATCGTCCATGGA 693
* * ********** *********** *********************************
consensus_9154#1 CCGAGCCATCTGAGCCATCATCATTACTAAGCGTTAATTTAAAACTAGATTAA----TGT 783
consensus_9154#5 CCGAGCCATCTGAGCCATCACCATTACTAAGCGTTAATTCAAAGCTAGTTTAA----TGT 741
consensus_9154#0 CCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTT-----------------TGT 814
consensus_9154#4 CCGAGCCATCTGAGCCATCATCATTACTAAACGCCAGTTT-----------------TGT 750
consensus_9154#2 CCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAATAAGGACTTC 760
consensus_9154#3 CCGAGCCATCTGAGCCATCATCATTACTAAGAATCATTCTAGTGGTGTAACAAGGTCTTC 753
******************** ********* * * *
consensus_9154#1 GTTGTTTAGGTTGAATGTTAATAAAA---TAAGTGCAA-ACATTTCAATTTC 831
consensus_9154#5 GCTGTTTAGGTTGAATGTTAATAAAA---TAAGTGCAA-ACA---------- 779
consensus_9154#0 ACGATCTAGATTAAAACTTGTTAGTA---AAAATAAATTGCATT-------- 855
consensus_9154#4 ACGATCTAGATTAAAACTTGTTAGTA---AAAATAAATTACATT-------- 791
consensus_9154#2 AGTTACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGC----------- 801
consensus_9154#3 AGCAACAAAACAGATAGTTTATAAAAGCATAAATAAAAAGCGATT------- 798
* * ** ** * ** * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||