cluster # 9180

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Anopheles gambiae
cluster # 9180 cluster # 9180 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9180#0 length = 1921 sequences # 12

consensus_9180#1 length = 715 sequences # 1
consensus_9180#2 length = 95 sequences # 1

consensusID : consensus_9180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1921
fasta sequence

                              [CCGAGCGTTCGGGCTGGTGTGCGATCTGACGTCCAAGAGCATCTCGCCGGACATGTGGAAGCTGTTGGAAATCATTTATGAGCTTTTCCAGAAGAATGGAGCAGAATACTTTGTAGACATGATGCCAGCACTGCACAACTACATTACCGTCGATACGCC-GCTTTCCTGTCGAACCAGAACCACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAGTCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATTGACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAAACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCTTCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACGGCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGTAAGCTG-TGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTG-AAGCGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAAGACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTGAAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA-TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAAAGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTG-CA--GAGCGACGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTA-C-A-CGCTGAACGCTAATTTA-CAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTAGAGGCAAAAGTGGCAACAAAATAAACCCAACCACCTCGCTCCCAATACACGAACACCACCACTCTCTGGTTCAGAAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTTCCCCTCCCGCTGCCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTGTTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTTAATATCTCCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTG--TGTGCGCGCGTAAAGAGTAAAAGGATAGAAAGAGATTA]

[+] EMBL BM641769             [CCGAGCGTTCGGGCTGGTGTGCGATCTGACGTCCAAGAGCATCTCGCCGGACATGTGGAAGCTGTTGGAAATCATTTATGAGCTTTTCCAGAAGAATGGAGCAGAATACTTTGTAGACATGATGCCAGCACTGCACAACTACATTACCGTCGATACGCCTGCTTTCCTGTCGAACCAGAACCACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAGTCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATTGACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAAACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCTTCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCTGTGCCCGATTCTTCGATTACGGCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGTAAGCTG TGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS09AP7             [                                                                                                                                                         TACGCC GCTTTCCTGTCGAACCAGAACCACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAGTCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATTGACGATTTCATACCGAGCTTCGTGGGGCTGGCACTGATGCGACTGACGAGGGAGGTGAAAACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCTTCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACGGCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGTAAGCTG TGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTG AAGCGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAAGACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTGAAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCACCCGAGCGAAAGAACCTGCAAGAGGTTCTCaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CNS099U9             [                                                                                                                                                                       TGTCGAA CAGAA CACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAGTCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATTGACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAAACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCTTCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACGGCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGTAAGCTGATGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAGCTGCCGGACAAAAACATTaac                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CNS09G17             [                                                                                                                                                                                           ATCGCGATGTACAACATGTGCAAGTAGGTCCTCACCAGCAACGCCACGGAGGAGTCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATTGACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAAACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCTTCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACGGCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGTAAGCTG TGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTG AAGCGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAAGACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTGAAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CNS09AP8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tTTG TGTCGCTGGGCGAACGCAAACCGACCGTGCTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTG AAGCGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAAGACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTGAAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTTTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCACCCGAGCGAAAGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTG CA  GAGCGACGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTTACACACAGTGCGCTTACC A CGCTGAACGCTAATTTA CAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AGA282502            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGCTGATGATTTTCGACGGCCTGAAAGCGTCCATATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAAGACCTCGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCATACTTGAAGAACATGCAGAAGATGGTGCAGGAACGGGAGGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGACGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGATACACAACGCCGCTGGACGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CNS09G18             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TGGATGAGATGAGCCCGTACTTGAAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCCTCGA TTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAAAGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTG CA  GAGCGACGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACGTCCTTTACACACAGTGCGCTTACC A CGCTGAACGCTAATTTA CAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTAGAGGCAAAAGTGACAACAAAATAAACCCAACCACCGCGCGCCCGAGACACGAAaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BM611020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ggTTGAAATTTCTGCCTCGATTTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGATGCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAAAACCCAAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAAAGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTGCCACTTCCCGCCGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTA C A CGCTGAACGCTAATTTA CAAAAAAAGCCCGCCTAACTACTACACACGTCCCACTTTCGCTAGAGGCAAAAGTGGCAACAAAATAAACCCAACCACCcgg                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CNS099UA             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAAAGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTG CA  GAGCGACGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTA CGAGCGCTGAACGCTAATTTA CAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BX466893             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACGGGGCAGAAGCAACAGTAATTG CA  GAGCGACGTTATACAGCAGAGCGACGACATGCAAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTA C A CGCTGAACGCTAATTTACCAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTAGAAGCAAAAGTGGCAACAAAATAAACCCAACCACtt                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX603573             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTA C A CGCTGAACGCTAATTTA CAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTAGAAGCAAAAGTGGCAACAAAATAAACCCAACCACTTCTCTCCCAATACACGAACACCACCACTCTCTGGTTCAGAAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTTCCCCTCCCGCTGCCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTGTTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTTAATATCTCCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTG  TGTGCGCG                              ]
[+] EMBL BM603775             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ccgCTTAACACACAGTGCGCTTA C A CGCTGAACGCTAATTTA CAAAAAAAGCCCGCCTAACTACTACACACGTCCCACTTTCGCTAGAGGCAAAAGTGGCAACAAAATAAACCCAACCACCTCTCTCCCAATACACGAGCACCACCACTCTCTGGTTCAGAAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTT   CTCCCGTCACCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTT TTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTGAATATCTTCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTGTATGTGTGCGCGTAAAGAGTAAAAGGATAGAAAGAGATTA]




>consensus_9180#0
CCGAGCGTTCGGGCTGGTGTGCGATCTGACGTCCAAGAGCATCTCGCCGGACATGTGGAA
GCTGTTGGAAATCATTTATGAGCTTTTCCAGAAGAATGGAGCAGAATACTTTGTAGACAT
GATGCCAGCACTGCACAACTACATTACCGTCGATACGCCGCTTTCCTGTCGAACCAGAAC
CACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAG
TCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATT
GACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAA
ACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCT
TCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACG
GCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGT
AAGCTGTGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTG
CTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTGAAG
CGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAA
GACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTG
AAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCC
TCGATTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGAT
GCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGAA
AACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATCTCCCCAAC
ACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAAAGAAC
CTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAGAGATT
GAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCTTTACG
GGGCAGAAGCAACAGTAATTGCAGAGCGACGTTATACAGCAGAGCGACGACATGCAAAAT
AGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATGGGACA
CCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCTTACAC
GCTGAACGCTAATTTACAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTTCGCTA
GAGGCAAAAGTGGCAACAAAATAAACCCAACCACCTCGCTCCCAATACACGAACACCACC
ACTCTCTGGTTCAGAAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTT
GTTCCCCTCCCGCTGCCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAAC
GTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCC
AAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCA
TATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTGTTTGTTTGTTTGTTT
CTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTTAATATCTCCTTAACACCGA
ATAAGTGTGCGTGTGTGTTTGTGTGTGCGCGCGTAAAGAGTAAAAGGATAGAAAGAGATT
A

consensusID : consensus_9180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 715
fasta sequence

                              [CCGGGAAGAACGATGGGTTTCGGTCTTCTGAACCAGAGAGTGGTGGTGCTCGTGTATTGGGAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTTCTCCCGTCACCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTTTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTGAATATCTTCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTGTATGTGTGCGCGTAAAGAGTAAAAGGATAGAAAGAGATTACAAGGAGAAAGAGAGTTTACAGGAGGAAAGGGAATAAAAGAGTTAGTGAAGGACTAGTTAGGTACGTTTACCCTAGCGGCAAAAGCGCATTTAAAGGCGAGTGCACTGGAACTCATCAACAATTAAAAACGAAACAAACGACTTTAGCGCGACATGTCGCCTAAAAACTACATACAAAAAAGCTCTATTATTATAACACAGCAGCAGCTAGCTCCCCGTAGCATATACGATGATGTACTAAAAGCGTAAC]

[+] EMBL BM593397             [CCGGGAAGAACGATGGGTTTCGGTCTTCTGAACCAGAGAGTGGTGGTGCTCGTGTATTGGGAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTTCTCCCGTCACCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTTTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTGAATATCTTCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTGTATGTGTGCGCGTAAAGAGTAAAAGGATAGAAAGAGATTACAAGGAGAAAGAGAGTTTACAGGAGGAAAGGGAATAAAAGAGTTAGTGAAGGACTAGTTAGGTACGTTTACCCTAGCGGCAAAAGCGCATTTAAAGGCGAGTGCACTGGAACTCATCAACAATTAAAAACGAAACAAACGACTTTAGCGCGACATGTCGCCTAAAAACTACATACAAAAAAGCTCTATTATTATAACACAGCAGCAGCTAGCTCCCCGTAGCATATACGATGATGTACTAAAAGCGTAAC]




>consensus_9180#1
CCGGGAAGAACGATGGGTTTCGGTCTTCTGAACCAGAGAGTGGTGGTGCTCGTGTATTGG
GAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCCGGTTTGTTCTCCCGTCACC
GAACACGCTTTTTGGTATGTAAACAACATTCTTTCGATAAAACGTTCACGTCCTTTACAC
GATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCG
ATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTT
CTTCATAATCAATCATCATAGTGGTTTTTTGTTTGTTTGTTTCTTCTATTACTATTACTG
TTCGCCCAGTGTTCGATTGCTTGAATATCTTCTTAACACCGAATAAGTGTGCGTGTGTGT
TTGTGTATGTGTGCGCGTAAAGAGTAAAAGGATAGAAAGAGATTACAAGGAGAAAGAGAG
TTTACAGGAGGAAAGGGAATAAAAGAGTTAGTGAAGGACTAGTTAGGTACGTTTACCCTA
GCGGCAAAAGCGCATTTAAAGGCGAGTGCACTGGAACTCATCAACAATTAAAAACGAAAC
AAACGACTTTAGCGCGACATGTCGCCTAAAAACTACATACAAAAAAGCTCTATTATTATA
ACACAGCAGCAGCTAGCTCCCCGTAGCATATACGATGATGTACTAAAAGCGTAAC

consensusID : consensus_9180#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 95
fasta sequence

                              [GCAGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATAAAAACAACACGGATCCGACCCGGTATA]

[+] EMBL CNS08Y33             [GCAGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTATGAACAATAAAAACAACACGGATCCGACCCGGTATA]




>consensus_9180#2
GCAGGACGATGAGGAAAACCCGAACGCGGTCGATGAGTACATTCTTTTCCAGGACGTTAT
GAACAATAAAAACAACACGGATCCGACCCGGTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9180#0      CCGAGCGTTCGGGCTGGTGTGCGATCTGACGTCCAAGAGCATCTCGCCGGACATGTGGAA 60
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      GCTGTTGGAAATCATTTATGAGCTTTTCCAGAAGAATGGAGCAGAATACTTTGTAGACAT 120
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      GATGCCAGCACTGCACAACTACATTACCGTCGATACGCCGCTTTCCTGTCGAACCAGAAC 180
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      CACGTGATCGCGATGTACAACATGTGCAAGTCGGTCCTCACCAGCAACGCCACGGAGGAG 240
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      TCGGAGTGTAGTGCAGCCAAATTGCTAGAAGTCATCATCCTACAGTGCAAGGGACACATT 300
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      GACGATTTCATACCGAGCTTCGTGGAGCTGGCACTGATGCGACTGACGAGGGAGGTGAAA 360
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      ACGTCCGAGCTGCGAACGATGTGCTTACAGGTGGTTATTGCAGCGATCTACTACAATCCT 420
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      TCCCTGTTGTTAGACATTTTGGAAAAGATCCCAATTCCGGTGCCCGATTCTTCGATTACG 480
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      GCTCACTTCATCCGACAGTGGCTGCACGATTACGATTGTTTCCTTGGCATTCACGATCGT 540
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      AAGCTGTGCATTATCGGGCTGTGCACGTTGCTGTCGCTGGGCGAACGCAAACCGACCGTG 600
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      CTGAGCGAGCTGCCGGACAAAATCATTCCCACGATGCTGATGATTTTCGACGGCCTGAAG 660
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      CGTGCCTATGCTGCCCGCGCCTCCGAGGGCGAGGAGGAGGAGAGCGAGGACGAAAGCGAA 720
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      GACCTGGAGGATGGGCTGTCGAGCGACGAGGACGATGTGGATGAGATGAGCCCGTACTTG 780
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      AAGAACATGCAGAAAATGGTGCAGGAACGGGGAGCCGAGGCCGGGTTTGAAATTTCTGCC 840
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      TCGATTCAGGATGCCGATTCGGACGAAGACGAGGACGACGATGACGATGATGATGACGAT 900
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      --------------------------------------CCGGGAAGAACGATGGGTTTCG 22
                                                                                  

consensus_9180#0      GCGGATGAAATCGATGAAACAGCGCTGGAAAGCTACACAACGCCGCTGGACGATGAGGA- 959
consensus_9180#2      --------------------------------------------GCAGGACGATGAGGA- 15
consensus_9180#1      GTCTTCTGAACCAGAGAGTGGTGGTGCTCGTGTATTGGGAGACGGAAGAACGATGGGTTT 82
                                                                  *  * ****** *   

consensus_9180#0      -AAACCCGAACGCGGT--CGATGAGTACATTCTTTTCCAGG-ACGTTATGAACAATCTCC 1015
consensus_9180#2      -AAACCCGAACGCGGT--CGATGAGTACATTCTTTTCCAGG-ACGTTATGAACAATAAAA 71
consensus_9180#1      CGGTTCTCGGTTCGGTTCCGGTTTGTTCTCCCGTCACCGAACACGCTTTTTGGTATGTAA 142
                           *      ****  ** *  ** *   * *  **    *** * *     **    

consensus_9180#0      CCAACACGGATCCGACCTGGTATACGATGCTTACCAGAAATTTGAACGCATCCGAGCGAA 1075
consensus_9180#2      ACAACACGGATCCGACCCGGTATA------------------------------------ 95
consensus_9180#1      ACAACATTCTTTCGATAAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGG 202
                       *****    * ***       *                                     

consensus_9180#0      AGAACCTGCAAGAGGTGCTCGTGCTGGCAAACCAGAAGAAGGAAACGAAGCGTTCGAAAG 1135
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      TGATCGCGTATAATGGACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCT 262
                                                                                  

consensus_9180#0      AGATTGAAAAGAGCGGTGGATATCAGTTCACGCAGCATCAGATACCGACCACCTTCAGCT 1195
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      GTATGTGTGTGTGTGCATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGT 322
                                                                                  

consensus_9180#0      TTACGGGGCAGAAGCAACAGTAATTGCAGAGCGACGTTATACAGCAGAGCGACGACATGC 1255
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      GGTTTTTTGTTTGTTTGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTT 382
                                                                                  

consensus_9180#0      AAAATAGCCAAATCGCCCCCGCGCCCCCCTTGCAGTGTGTAGCGGTGCGATGGCTCCATG 1315
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      GAATATCTTCTTAACACCGAATAAGTGTGCGTGTGTGTTTGTGTATGTGTGCGCGTAAAG 442
                                                                                  

consensus_9180#0      GGACACCCTTTGGTCTCTCGGTTGCTACACAACACGGACATCCTTAACACACAGTGCGCT 1375
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      AGTAAAAGGATAGAAAGAGATTACAAGGAGAAAGAGAGTTTACAGGAGGAAAGGGAATAA 502
                                                                                  

consensus_9180#0      TACACGCTGAACGCTAATTTACAAAAAAAGCTCGCCTAACTACTACCCACGTCCCACTTT 1435
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      AAGAGTTAGTGAAGGACTAGTTAGGTACGTTTACCCTAGCGGCAAAAGCGCATTTAAAGG 562
                                                                                  

consensus_9180#0      CGCTAGAGGCAAAAGTGGCAACAAAATAAACCCAACCACCTCGCTCCCAATACACGAACA 1495
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      CGAGTGCACTGGAACTCATCAACAATTAAAAACGAAACAAACGACTTTAGCGCGACATGT 622
                                                                                  

consensus_9180#0      CCACCACTCTCTGGTTCAGAAGACGGAAGAACGATGGGTTTCGGTTCTCGGTTCGGTTCC 1555
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      CGCCTAAAAACTACATACAAAAAAGCTCTATTATTATAACACAGCAGCAGCTAGCTCCCC 682
                                                                                  

consensus_9180#0      GGTTTGTTCCCCTCCCGCTGCCGAACACGCTTTTTGGTATGTAAACAACATTCTTTCGAT 1615
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      GTAGCATATACGATGATGTACTAAAAGCGTAAC--------------------------- 715
                                                                                  

consensus_9180#0      AAAACGTTCACGTCCTTTACACGATCAGCGGTGATCGGTTGTGGTGATCGCGTATAATGG 1675
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      ACCCCAAAAGCACTCGGGATCGATTCCGCAGCAGTTTCGTGTCTGTATGTGTGTGTGTGC 1735
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      ATGCATATTTTTACGCTTATTTCTTCATAATCAATCATCATAGTGGTTTGTTTGTTTGTT 1795
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      TGTTTCTTCTATTACTATTACTGTTCGCCCAGTGTTCGATTGCTTTAATATCTCCTTAAC 1855
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      ACCGAATAAGTGTGCGTGTGTGTTTGTGTGTGCGCGCGTAAAGAGTAAAAGGATAGAAAG 1915
consensus_9180#2      ------------------------------------------------------------
consensus_9180#1      ------------------------------------------------------------
                                                                                  

consensus_9180#0      AGATTA 1921
consensus_9180#2      ------
consensus_9180#1      ------