cluster # 92

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Anopheles gambiae
cluster # 92 cluster # 92 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_92#0 length = 322 sequences # 1

consensus_92#1 length = 257 sequences # 1

consensusID : consensus_92#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 322
fasta sequence

                              [AGGCAAGAATCGGCACGAGGGTGGAAGAACACTATAGATGCGGTACAGCTACAGAGAGCCACACAGAATGTGCAATATCCCCAGAGAAAGAGATTATTTGTGAGCGGGTGTTACTTCGTAGCGGAGAATCTGTGATCTCTTGCGGGAGAGTTAGTATTGTCGGTTCGGTTGAACGGGAAGCGTTTGCAAGCTAATCTGTTCGCTGGAAAGCTTTTTCACACTTCAAGTAATTCTTCCAACAAGAAAAGAATTGATAGAGTGTAAAACACTTAACTGGCGGATTGTTTACCCCGAGCAATCGTTTTCCTTCGATCCAGCCTTC]

[+] EMBL BX468930             [AGGCAAGAATCGGCACGAGGGTGGAAGAACACTATAGATGCGGTACAGCTACAGAGAGCCACACAGAATGTGCAATATCCCCAGAGAAAGAGATTATTTGTGAGCGGGTGTTACTTCGTAGCGGAGAATCTGTGATCTCTTGCGGGAGAGTTAGTATTGTCGGTTCGGTTGAACGGGAAGCGTTTGCAAGCTAATCTGTTCGCTGGAAAGCTTTTTCACACTTCAAGTAATTCTTCCAACAAGAAAAGAATTGATAGAGTGTAAAACACTTAACTGGCGGATTGTTTACCCCGAGCAATCGTTTTCCTTCGATCCAGCCTTC]




>consensus_92#0
AGGCAAGAATCGGCACGAGGGTGGAAGAACACTATAGATGCGGTACAGCTACAGAGAGCC
ACACAGAATGTGCAATATCCCCAGAGAAAGAGATTATTTGTGAGCGGGTGTTACTTCGTA
GCGGAGAATCTGTGATCTCTTGCGGGAGAGTTAGTATTGTCGGTTCGGTTGAACGGGAAG
CGTTTGCAAGCTAATCTGTTCGCTGGAAAGCTTTTTCACACTTCAAGTAATTCTTCCAAC
AAGAAAAGAATTGATAGAGTGTAAAACACTTAACTGGCGGATTGTTTACCCCGAGCAATC
GTTTTCCTTCGATCCAGCCTTC

consensusID : consensus_92#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence

                              [CCGCCCACGCGTCCGTCACACTTCAAGTAATTCTTCCAACAAGAAAAGAATTGATAGAGTGTAAAAAACTGAAACTGGCGGATTGTTTACTCCGAGCAATTGTTTTCCTTCGATCCAGCCTCGATCACAATAAATCATTCCCCTATCGATTCAGTTAGGCAGGCAAGGCTCACTAGCTTGTGAACGGAAAGGAAGGTAAATACACATATATATCAGAAACCGGCGAAGCGAAAGTAAGTTCGATGGGTCGACTGACT]

[+] EMBL BM628638             [CCGCCCACGCGTCCGTCACACTTCAAGTAATTCTTCCAACAAGAAAAGAATTGATAGAGTGTAAAAAACTGAAACTGGCGGATTGTTTACTCCGAGCAATTGTTTTCCTTCGATCCAGCCTCGATCACAATAAATCATTCCCCTATCGATTCAGTTAGGCAGGCAAGGCTCACTAGCTTGTGAACGGAAAGGAAGGTAAATACACATATATATCAGAAACCGGCGAAGCGAAAGTAAGTTCGATGGGTCGACTGACT]




>consensus_92#1
CCGCCCACGCGTCCGTCACACTTCAAGTAATTCTTCCAACAAGAAAAGAATTGATAGAGT
GTAAAAAACTGAAACTGGCGGATTGTTTACTCCGAGCAATTGTTTTCCTTCGATCCAGCC
TCGATCACAATAAATCATTCCCCTATCGATTCAGTTAGGCAGGCAAGGCTCACTAGCTTG
TGAACGGAAAGGAAGGTAAATACACATATATATCAGAAACCGGCGAAGCGAAAGTAAGTT
CGATGGGTCGACTGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_92#0      AGGCAAGAATCGGCACGAGGGTGGAAGAACACTATAGATG--CGGTACAGCTACAGAGAG 58
consensus_92#1      ----------CCGCCCACGCGTCCGTCA-CACTTCAAGTAATTCTTCCAACAAGAAAAGA 49
                              * ** *  * **     * ****  *  *      * ** * * * *   

consensus_92#0      CCACACAGAATGTGCAATATCCCCAGAGAAAGAGATTATTTGTGAGCGGGTGTTACTTCG 118
consensus_92#1      ATTGATAGAGTGTAAAAAA--CTGAAACTGGCGGATTGTTTACTCCGAGCAATTGTTTTC 107
                        * *** ***  ** *  *  * *      **** ***       *   **  **  

consensus_92#0      TAGCGGAGAATCTGTGATCTCTTGCGGGAGAGTTAGTATTGTCGGTTCGGTTGAACGGGA 178
consensus_92#1      CTTCGATCCAGCCTCGATCACA---ATAAATCATTCCCCTATCGATTCAGTTAGGCAGGC 164
                       **    * *   **** *       *    *     * *** *** ***   * ** 

consensus_92#0      AGCGTTTGCAAGCTAATCTGTTCGCTGGAAAGCTTTTTCACACTTCAAGTAATTCTTCCA 238
consensus_92#1      AAGGCTCACTAGCT----TGTGAACGGAAAGGA-------------AGGTAAATACACAT 207
                    *  * *  * ****    ***   * * ** *              * **** *   *  

consensus_92#0      ACAAGAAAAGAATTGATAGAGTGTAAA-ACACTTAACTGGCGGATTGTTTACCCCGAGCA 297
consensus_92#1      ATATATCAGAAACCGGCGAAGCGAAAGTAAGTTCGATGGGTCGACTGACT---------- 257
                    * *    *  **  *    ** * **  *   *  *  **  ** **  *          

consensus_92#0      ATCGTTTTCCTTCGATCCAGCCTTC 322
consensus_92#1      -------------------------