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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1020 fasta sequence
[TTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTTAATCAACTCACTATCATTCGCTTTATTCGATTTGGCAGTAGGGGAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGT-CCGCAATGGCGGTGATTTGTGCCTGCGCCT-GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTT-CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG-ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT-CTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGAT-CGGAGCGAGAGATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCT-GGCCGCTCGCAGCAGTGCTGTTATTCGTAACATTTTTCACGTCGAATGTTTGAATTGTTTCCTTTCCAACTTTGCTTTTGTTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCT]
[-] EMBL CNS09EYP [TTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTTAATCAACTCACTATCATTCGCTTTATTCGATTTGGCAGTAGGGGAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGT CCGCAATGGCGGTGATTTGTGCCTGCGCCT GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCA CTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGGC CTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAGATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGTGCTGTTATTCGTAACATTTTTCACGTCGAATGTTTGAAT ]
[+] EMBL CNS0972O [ tactTTAATCACCGCACTATCATTCGCTTTATTCGATTTGGCAGTAGGGGAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGT CCGCAATGGCGGTGATTTGTGCCTGCGCCT GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTTGCGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGTGCTTTGCCCTCGTACGTGATGCGCA CGTTTCGATCGACCCGGTGGTGGATGCGGAGCGAGAAATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGGGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGGGTAGTGTCGTACCGT ]
[+] EMBL CNS093L0 [ TCATTCGCTTTATTCGATTTGGCAGTAGGGAAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGT CCGCAATGGCGGTGATTTGTGCCTGCGCCT GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAG GTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAAATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTCCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCTGGGCCGCTCGCAGCAGTTCTGTTATTCGT ]
[-] EMBL CNS093KZ [ CCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGTGCCGCAATGGCGGTGATTTGTGCCTGCGCCTGGAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCA CTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGGC CTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAGATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGTGCTGTTATTCGTAACA TTTTCACGTCGAATGTTTGAATTGTTTCCTTT ]
[+] EMBL CNS09M80 [ AGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGT CCGCAATGGCGGTGATTTGTGCCTGCGCCT GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTT CGGCACGGGAATTAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGTTTTATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAG GTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAAAATTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTTCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTGACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGTTCTGTTATTCGTAACATTTTTCACGTCGAATGTTTGAATTGTTTCCTTTCCAACTTTGCTTTTGTTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCT]
[-] EMBL CNS0972N [ GCCTGCCCCT GAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCA CTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGGC CTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACGCACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAGATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCAT TGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGTGCTGTTATTCGTAACATTTTTCACGTCGAATGTTTGAATTGTTTCCTTTCCAA ]
[-] EMBL BX624611 [ TCGTCCTCGNAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGNCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGT CTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGAT CGGAGCGAGAGATTTTTCACGTAATCGTCCTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGATGGTGTTACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGT ]
[-] EMBL BM582749 [ TTGATGACCAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACCTT CGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTACAGCTGATAGT CTTTGCCTTCGTACGTGATGCGCAGCGTTTCGATGGACCCGGTGGTGGAT CGGAGCGAGAGATTTTTCACGTAATCGTCTTTCATGGCGGCGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCAGGCCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGCGCTGCCGGTAGTTCACACCGTATGGGGCGCAGTGCTGTCCAGATGGATCGCTTTGTGAAAGCACGAACGATGGTGCTACCGTTTGATTCTAGCGCTGTAAAGCT GGCCGCTCGCAGCAGTGCTGTTATTCGTAACATTTTTCACGTCGAACGTTTGAATTGTTTCCTTTCCAACTTTGCTTTTGcgg ]
[+] EMBL CNS09EYQ [ TGCTGCGGGTTCAGGTTCATGCCGCTGCGCTGGATGGCTTTCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACG ACGAGCGTTTTGGGATTTTTGC ]
consensusID : consensus_9224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 997 fasta sequence
[CCCGCAGCTCGAGCACATGTGCCCTTTTTTTTTTTTTTTTTAGCTTTAATCAACTCACTATCATTCGCTTTATTCGATTTGGCAGTAGGGGAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGTCCGCAATGGCGGTGATTTGTGCCTGCGCCTGAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACTTCGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACGACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGTCTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGACCGGAGCGAGAGATTTTTCAC-GTAATCGTCCTTCATGGCGGCCAGGCTCTT-TTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCAGGCCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGCGCTGCCGGTAGTTCACATCGAACGGGGCGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTTATTCGTAACATGTTTCACGTC-GNATGTTTAAA-TTGTTTCCTTTTAAACCTCG--AAACCTGGG]
[-] EMBL CNS09M7Z [CCCGCAGCTCGAGCACATGTGCCCTTTTTTTTTTTTTTTTTAGCTTTAATCAACTCACTATCATTCGCTTTATTCGATTTGGCAGTAGGGGAGGAAAGGCGGGACGACAATTTCTACTCTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTGCCTCCTTGACAAACCCGTCCGCAATGGCGGTGATTTGTGCCTGCGCCTGAAATGCTTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGGGCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCTTCGCGATGTTCCCGCGTCACTTCGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGCGGGTTCAGGTTCATGCCTGCGCTGGATGGCTTGCAGCACCACCGGGATGGTTTGCGGGAAGGCCACCAAATTGACGACGAGCGTTTTGGGATTTTTGCGCACCACCTGCCCCAGCTCCTGCAGCTGATAGTCTTTGCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGATCGGAGCGAGAGATTTTTCAC GTAATCGTCCTTCATGGCGGCGAGGCTCTT TTCCAT TGCGTTCGCAGCCCGGCCAGATCGATCAGGTCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGTGCTTCCGGTAGTTCACATCGAACGGGGCGCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGAACGAT ]
[-] EMBL AL933350 [ taCCCTCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGACCGGAGCGAGAGATTTTTCAC GTAATCGTCCTTCATGGCGGCCAGGCTCTTGTTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCAGGCCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGCGCTGCCGGTAGTTCACATCGAACGGGGCGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTTATTCGTAACATGTTTCACGTC GNATGTTTAAA TTGTTTCCTTTTAAACCTCG ]
[-] EMBL AL694167 [ TCGTACGTGATGCGCAGCGTTTCGATCGACCCGGTGGTGGACCGGAGCGAGAGATTTTTCACGGTAATCGTCCTTCAT GCGGCCAGGCTCTT TTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCA GCCGCCGAGCTGCTCCTCGTTGATCTGTACTTT GC GCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTTGCTGCGGTAAGACTGGCGACTGGCGCTGCCGGTAGTTCACATCGAACGGGGCGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTTATTCGTAACATGTTTAACGTCAGAATGTTTAAAGTTGTTTCCTTT CCCCTCGTTAAACCTGGG]
consensusID : consensus_9224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 984 fasta sequence
[ATTGCCTCTAGTGCCTGTTGGCTCAGATCCTGTGGTATAATTTGGGGTCTCTTTGTCNCTAAACGCNCATATNCCCCCAACCCANCCGGGGTGGTATATTTAGGGGCTTTTTTGTCCCCGGGGGGGGGAAAGAATGGCCCCCCATTAGCCCACATATAATTTTTTGGGTCCCGTAACCCGTGAAGGCCAGGCTCTCATTTTTGGGGGGGANAACTTTATTTTTTGTTGGGCTGCGCAAAACCCCTAAAATCCGCGTTGTGCCCCACCCACAATAAAGGNCANTTTCCNCCCTTGGTTTAACGGCCTTGGGAATTTAAAGGGTTCCACTTGTGTTTAACCTCCCCTTTCCTGTTTAACCAGTTTGAAATTGGCCCAGCCCAAGGCCAGNGTTGTGTCCAGGGAGTGCCGGGAATCCCTCTCCAGGTGTTTGGGTGTTTTGGGGAAACCCCAGGGGGAAACGCCGGGAAGGGAAAGGGAAATTTGTTGTTGTTCCAAAACCATGTTAAATCCGGTCANCATTTCCAATGGCGCAGGCCCAAGGGCTTCCTCTGCTGTGCACAATCTGGCAGTTTCGCAAGCCACAGTCCCAAGGATCAGATTCAAGGGCACGCGNCAGAGCGCCATGGCATCCACGTCAGTTTTGGATCCATGGTAACCAATCTGTGGGGACAGTGGCAATGCAACCACATTTATTGTCATTTCATTTTTGTCCATTGCACCATTGGCAGTAGTGTCAGTACACAGTCAGGCAGGTGGCATGGAGTTTTGCATGCAGGTAAGACATGGCAGACATGGCAGCATGCACAGGTAGTTCAACATCAGAACGGGGCAGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCAGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTTATTCGTAACATGTTTCACGTCGAATGTTTAAATTGTTCCTCGGGCANATTCTTG]
[-] EMBL AL931210 [ATTGCCTCTAGTGCCTGTTGGCTCAGATCCTGTGGTATAATTTGGGGTCTCTTTGTCNCTAAACGCNCATATNCCCCCAACCCANCCGGGGTGGTATATTTAGGGGCTTTTTTGTCCCCGGGGGGGGGAAAGAATGGCCCCCCATTAGCCCACATATAATTTTTTGGGTCCCGTAACCCGTGAAGGCCAGGCTCTCATTTTTGGGGGGGANAACTTTATTTTTTGTTGGGCTGCGCAAAACCCCTAAAATCCGCGTTGTGCCCCACCCACAATAAAGGNCANTTTCCNCCCTTGGTTTAACGGCCTTGGGAATTTAAAGGGTTCCACTTGTGTTTAACCTCCCCTTTCCTGTTTAACCAGTTTGAAATTGGCCCAGCCCAAGGCCAGNGTTGTGTCCAGGGAGTGCCGGGAATCCCTCTCCAGGTGTTTGGGTGTTTTGGGGAAACCCCAGGGGGAAACGCCGGGAAGGGAAAGGGAAATTTGTTGTTGTTCCAAAACCATGTTAAATCCGGTCANCATTTCCAATGGCGCAGGCCCAAGGGCTTCCTCTGCTGTGCACAATCTGGCAGTTTCGCAAGCCACAGTCCCAAGGATCAGATTCAAGGGCACGCGNCAGAGCGCCATGGCATCCACGTCAGTTTTGGATCCATGGTAACCAATCTGTGGGGACAGTGGCAATGCAACCACATTTATTGTCATTTCATTTTTGTCCATTGCACCATTGGCAGTAGTGTCAGTACACAGTCAGGCAGGTGGCATGGAGTTTTGCATGCAGGTAAGACATGGCAGACATGGCAGCATGCACAGGTAGTTCAACATCAGAACGGGGCAGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCAGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTTATTCGTAACATGTTTCACGTCGAATGTTTAAATTGTTCCTCGGGCANATTCTTG]
consensusID : consensus_9224#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence
[AGTCCACCATGTTGATTGAGTCCGTGCCTNNTTGGGTTTGAGTTTGGGCGCGCTGTTTNGAGCCATAGGCCCGTAATGCCTCCTAANCGCNCGGGGTGGGTTTAANTTTGCGGGTCTGTTGTTCCGTCCGGTGNGATGATATNAGGGGTGGCCGCCCAACTCTCGCCAGAANTATAGTTTGTGTTAATCNGTGTCAGNCTGGGTANGGTCCNTATTTTTGTTTTTTTGGGGGNTAAATTTTNTTGTGTCGTAGGCCCGGTGCTNANCNGCAAATNCTCGTGTGCCGCGCCTAATAGTCCNCCGCTGGTTATAAGCCTGGAATGAGGTTCCTTTNTAGCCCGGTTTCGGTTAATCTGTTAGAATTGGCGTGCCAAGCCGTNTTGTTGCCGGAATNCGCGNACCGCGCAGGTGTTGGGTTGGGTACTCCCCGGGGAAGTCGGTAAGNTAGGAATTGTGTGTGTGCAACCCGGTTAAATNCCGGTTCCCACTGTGTCCAGTTGCCGGCCCAAGGGCCTNTCCTGTGGGCCATGCNNTGCGTTCGCAAGGCCCCCGGTNCCAGGATCGGATCAAGGCCGCCGAGCTGCCTGCACATCGTTTGATCTGTACTTTGCGTCTGCAACCNCGTTTTTGTCTTTCCATTTTTGTCNNTTGCCNCATTGGCGTAGTGTCGTACCGTCGCAGGTGCTGGAGTTTTGCTGCAGGTAAGACTGGCAGACTGGCAGCATGCACAGGTAGTTCACATCAGAACAGGGGGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTATTCGTAACATGTTTCACGTCGAATGTAACCGCGGGGAATTCTGC]
[-] EMBL AL692112 [AGTCCACCATGTTGATTGAGTCCGTGCCTNNTTGGGTTTGAGTTTGGGCGCGCTGTTTNGAGCCATAGGCCCGTAATGCCTCCTAANCGCNCGGGGTGGGTTTAANTTTGCGGGTCTGTTGTTCCGTCCGGTGNGATGATATNAGGGGTGGCCGCCCAACTCTCGCCAGAANTATAGTTTGTGTTAATCNGTGTCAGNCTGGGTANGGTCCNTATTTTTGTTTTTTTGGGGGNTAAATTTTNTTGTGTCGTAGGCCCGGTGCTNANCNGCAAATNCTCGTGTGCCGCGCCTAATAGTCCNCCGCTGGTTATAAGCCTGGAATGAGGTTCCTTTNTAGCCCGGTTTCGGTTAATCTGTTAGAATTGGCGTGCCAAGCCGTNTTGTTGCCGGAATNCGCGNACCGCGCAGGTGTTGGGTTGGGTACTCCCCGGGGAAGTCGGTAAGNTAGGAATTGTGTGTGTGCAACCCGGTTAAATNCCGGTTCCCACTGTGTCCAGTTGCCGGCCCAAGGGCCTNTCCTGTGGGCCATGCNNTGCGTTCGCAAGGCCCCCGGTNCCAGGATCGGATCAAGGCCGCCGAGCTGCCTGCACATCGTTTGATCTGTACTTTGCGTCTGCAACCNCGTTTTTGTCTTTCCATTTTTGTCNNTTGCCNCATTGGCGTAGTGTCGTACCGTCGCAGGTGCTGGAGTTTTGCTGCAGGTAAGACTGGCAGACTGGCAGCATGCACAGGTAGTTCACATCAGAACAGGGGGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGAACGATGGTGCTACCGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGTATTCGTAACATGTTTCACGTCGAATGTAACCGCGGGGAATTCTGC]
consensusID : consensus_9224#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence
[ACCCCCAAAAAATTTTGTGGACCGCGACCGGGAAGGCCGTTTTTTTTGGGGGAAATTTTTTTTGGCCGGCCAACCCAACCACTTGGCCCCCAAAGGCTTCCCCCTGTGTTTAAGCCTTGAATTAAGTCCTTTTACCCCTCCGACCGTGTATGCGCAAGCGTTTTCGATTCGACCCGGTGGTGGACACAGGAGCGAGAGATTTTTCACGTAATCAGTCCTTCATGCGGCCAGGCTCTTTTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCAGGCCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTNAACCTCGGGCAA]
[-] EMBL AL693496 [ACCCCCAAAAAATTTTGTGGACCGCGACCGGGAAGGCCGTTTTTTTTGGGGGAAATTTTTTTTGGCCGGCCAACCCAACCACTTGGCCCCCAAAGGCTTCCCCCTGTGTTTAAGCCTTGAATTAAGTCCTTTTACCCCTCCGACCGTGTATGCGCAAGCGTTTTCGATTCGACCCGGTGGTGGACACAGGAGCGAGAGATTTTTCACGTAATCAGTCCTTCATGCGGCCAGGCTCTTTTCCATCTGCGTTCGCAGCCCGTCCAGATCGATCAGGCCGCCGAGCTGCTCCTCGTTGATCTGTACTTTGGCGGCTGCACCCTTTTTGTCTTTCTTTTTGTCCTTGCCCTTGGCGTAGTGTCGTACCGTCGGCGGTGGCTGGAGTTTNAACCTCGGGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9224#0 --------------TTTTTTTTTTTTTTTTTTTTTTTTTTTAGCTT-AATCAACTCACTA 45
consensus_9224#1 CCCGCAGCTCGAGCACATGTGCCCTTTTTTTTTTTTTTTTTAGCTTTAATCAACTCACTA 60
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 --------------------------------------------------------ATTG 4
consensus_9224#3 ----------------------------------------------------------AG 2
consensus_9224#0 TCATTCGCTTTATTCGATTTGGCAGTAGG--GGAGGAAAGGCGGGACGACAATTTCTACT 103
consensus_9224#1 TCATTCGCTTTATTCGATTTGGCAGTAGG--GGAGGAAAGGCGGGACGACAATTTCTACT 118
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 CCTCTAGTGCCTGTTGGCTCAGATCCTGT---GGTATAATTTGGGGT---CTCTTTGTCN 58
consensus_9224#3 TCCACCATGTTGATTGAGTCCGTGCCTNNTTGGGTTTGAGTTTGGGCGCGCTGTTTNGAG 62
consensus_9224#0 CTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTG 163
consensus_9224#1 CTCCCTGGTCTTACTTATCGCCCAGCAGTTCCGCCTGCTTGAGCTCCATTAGCTTTTCTG 178
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 CTAAACGCNCATA-TNCCCCCAACCCANCCGGGGTGG---TATATTTAGGGGCTTTTTTG 114
consensus_9224#3 CCATAGGCCCGTAATGCCTCCTAANCGCNCGGGGTGGGTTTAANTTTGCGGGTCTGTTGT 122
consensus_9224#0 CCT--CCTTGACAAACCCGTCCGCAATGGCGGTGAT---TTGTGCCTGCGCCTGAAATGC 218
consensus_9224#1 CCT--CCTTGACAAACCCGTCCGCAATGGCGGTGAT---TTGTGCCTGCGCCTGAAATGC 233
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 TCC--CCGGGGGGGGGA----AAGAATGGCCCCCCA----TTAGCCCACATATAATTTTT 164
consensus_9224#3 TCCGTCCGGTGNGATGATATNAGGGGTGGCCGCCCAACTCTCGCCAGAANTATAGTTTGT 182
consensus_9224#0 -----TTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGG 273
consensus_9224#1 -----TTCGTCCTCGGAGACGTTGGACTGCTTCTTTAGCTTCTTGATGGATTGGTTCTGG 288
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 -----TGGGTCCCGTAACCCGTGAAGGCCAGGCTCTCATTTTTGGGGGGGANAA-CTTTA 218
consensus_9224#3 GTTAATCNGTGTCAGNCTGGGTANGGTCCNTATTTTTGTTTTTTTGGGGGNTAAATTTTN 242
consensus_9224#0 GCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCT 333
consensus_9224#1 GCGTCCTTGATGCGATCGCGGCACTTGATGAACAGCACCTTGGCGTTCTTCGCCAACCCT 348
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 TTTTTTGTTGGGCTGCGCAAAACCCCTAAAATCCGCGTTGTGCCCCACCCACAATAAAGG 278
consensus_9224#3 TTGTGTCGTAGGCCCGGTGCTNANCNGCAAATNCTCGT-GTGCCGCGCCTA--------- 292
consensus_9224#0 TCGCGATGTTCCCGCGTCACCTTCGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGC 393
consensus_9224#1 TCGCGATGTTCCCGCGTCAC-TTCGGCACGGGAATGAACAGCGTCGTGCCGTCCTGCTGC 407
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 NCANTTTCCNCCCTTGGTTTAACGGCCTTGGGAATTTAAAGGGTTCCACTTGTGTTTAAC 338
consensus_9224#3 --ATAGTCCNCCGCTGGTT-ATAAGCCT--GGAAT----GAGGTTCC-----TTTNTAGC 338
consensus_9224#0 GGGTTCAGGTTCATGCCGCTGCGCTGGA--TGGCTTGCAGCACCACCGGGATGGTTTGCG 451
consensus_9224#1 GGGTTCAGGTTCATGCC--TGCGCTGGA--TGGCTTGCAGCACCACCGGGATGGTTTGCG 463
consensus_9224#4 ------ACCCCCAAAAAATTTTG-TGGA--CCGCGACCGGGAAGGCCGTTTTTTTTGGGG 51
consensus_9224#2 CTCCCCTTTCCTGTTTAACCAGTTTGAAATTGGCCCAGCCCAAGGCCAGNGTTGTGTCCA 398
consensus_9224#3 C----CGGTTTCGGTTAATCTGTTAGAA-TTGGC---GTGCCAAGCC-GTNTTGTTGCCG 389
* * ** ** * *
consensus_9224#0 GGAAGGCCACCAAATTGACGA--CGAGCGTTTTGGGATTTTTGCGCA-CCACCTGCCCCA 508
consensus_9224#1 GGAAGGCCACCAAATTGACGA--CGAGCGTTTTGGGATTTTTGCGCA-CCACCTGCCCCA 520
consensus_9224#4 GAAATTTTTTTTGGCCGGCCAACCCAACCACTTGGCCCCCAAAGGCTTCCCCCTGTGTTT 111
consensus_9224#2 GGGAGTGCCGGGAATCCCTCT-CCAGGTGTTTGGGTGTTTTGGGGAAACCCCAGGGGGAA 457
consensus_9224#3 GAATNCGC---GNACCGCGC----AGGTGTTGGG-----TTGGGTACTCCCCGGGGAA-- 435
* * ** * *
consensus_9224#0 GCTCCTGCAGCTGA---TAGTCTTTGCCCT--C-----GTACGTG--ATGCGCA-GCGTT 555
consensus_9224#1 GCTCCTGCAGCTGA---TAGTCTTTGCCCT--C-----GTACGTG--ATGCGCA-GCGTT 567
consensus_9224#4 AAGCCTTGAATTAA---GTCCTTTTACCCCTCC-----GACCGTGT-ATGCGCAAGCGTT 162
consensus_9224#2 ACGCCGGGAAGGGAAAGGGAAATTTGTTGTTGTTCCAAAACCATGTTAAATCCGG----T 513
consensus_9224#3 --GTCGGTAAGNTA---GGAATTGTGTGTGTGC-----AACCCGGTTAAATNCCGGTTCC 485
* * * * * * * * *
consensus_9224#0 T-CGAT-CGACCCGGTG--GTGGATC--GGAGCGAGAGATTTTTCACGTAATC-GTCCTT 608
consensus_9224#1 T-CGAT-CGACCCGGTG--GTGGACC--GGAGCGAGAGATTTTTCACGTAATC-GTCCTT 620
consensus_9224#4 TTCGATTCGACCCGGTG--GTGGACACAGGAGCGAGAGATTTTTCACGTAATCAGTCCTT 220
consensus_9224#2 CANCAT---TTCCAATGGCGCAGGCCCAAGGGCTTCCTCTGCTGTGCACAATCTGGCAGT 570
consensus_9224#3 CACTGT---GTCCAGT--TGCCGGCCCAAGGGC---CTNTCCTGTGGGCCATGCNNTGCG 537
* ** * * * * ** * * **
consensus_9224#0 CATGGCGG-CGAGGCTCTTTTCCATCTGCGTTCGCAGCCCGG-CCAGATCGATCAGGTCG 666
consensus_9224#1 CATGGCGG-CCAGGCTCTTTTCCATCTGCGTTCGCAGCCCGT-CCAGATCGATCAGGCCG 678
consensus_9224#4 CATG-CGG-CCAGGCTCTTTTCCATCTGCGTTCGCAGCCCGT-CCAGATCGATCAGGCCG 277
consensus_9224#2 TTCGCAAG-CCACAGTCCCAAGGATCAGATTCAAGGGCACGCGNCAGAGCGCCATGGCAT 629
consensus_9224#3 TTCGCAAGGCCCCCGGTNCCAGGATCGGAT-CAAGGCC-----GCCGAGCT-----GCCT 586
* * * *** * * * ** * *
consensus_9224#0 CCGAGCTGCTCCTCGTT-----------GATCTGT----ACTTTGGCG--GCTGCACCCT 709
consensus_9224#1 CCGAGCTGCTCCTCGTT-----------GATCTGT----ACTTTGGCG--GCTGCACCCT 721
consensus_9224#4 CCGAGCTGCTCCTCGTT-----------GATCTGT----ACTTTGGCG--GCTGCACCCT 320
consensus_9224#2 CCACGTCAGTTTTGGATCCATGGTAACCAATCTGTGGGGACAGTGGCAATGCAACCACAT 689
consensus_9224#3 GCACATCGTTT-----------------GATCTGT----ACTTTGCGTCTGCAACCNCGT 625
* * ****** ** ** ** * * *
consensus_9224#0 TT-TTGTCTTTC--TTTTTGTCC-TTGCCC--TTGGC-GTAGTGTC---GTACCGTC--G 757
consensus_9224#1 TT-TTGTCTTTC--TTTTTGTCC-TTGCCC--TTGGC-GTAGTGTC---GTACCGTC--G 769
consensus_9224#4 TT-TTGTCTTTC--TTTTTGTCC-TTGCCC--TTGGC-GTAGTGTC---GTACCGTC--G 368
consensus_9224#2 TTATTGTCATTTCATTTTTGTCCATTGCACCATTGGCAGTAGTGTCAGTACACAGTCAGG 749
consensus_9224#3 TT-TTGTCTTTCCATTTTTGTCNNTTGCCNCATTGGC-GTAGTGTC---GTACCGTC--G 678
** ***** ** ******** **** ***** ******** ** *** *
consensus_9224#0 GCGGTGGC-TGGAGTTTTG--CTGCGGTAAGAC-TGGC------GACTGGTGCTTCCGGT 807
consensus_9224#1 GCGGTGGC-TGGAGTTTTG--CTGCGGTAAGAC-TGGC------GACTGGCGCTGCCGGT 819
consensus_9224#4 GCGGTGGC-TGGAGTTTNAACCTCGGGCAA------------------------------ 397
consensus_9224#2 CAGGTGGCATGGAGTTTTGCATGCAGGTAAGACATGGCAGACATGGCAGCATGCACAGGT 809
consensus_9224#3 CAGGTGC--TGGAGTTTTGC-TGCAGGTAAGAC-TGGCAGAC-TGGCAGCATGCACAGGT 733
**** ******** ** **
consensus_9224#0 AGTTCA-CATCGAACGGGGC--GCAATGCTGTGCAGATGGACCGCTTTGTGAAGGCACGA 864
consensus_9224#1 AGTTCA-CATCGAACGGGGC--GCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGA 876
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 AGTTCAACATCAGAACGGGGCAGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGA 869
consensus_9224#3 AGTTCA-CATCAGAACAGGG-GGCAGTGCTGTGCAGATGGAACGCTTTGTGAAGGCACGA 791
consensus_9224#0 ACGATGGTGTTACC-GTTTGATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGT 923
consensus_9224#1 ACGATGGTGCTACC-GTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGT 935
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 ACGATGGTGCTACCAGTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGT 929
consensus_9224#3 ACGATGGTGCTACC-GTTTAATTCTAGCGCTGTAAAGCTGGCCGCTCGCAGCAGTGCTGT 850
consensus_9224#0 TATTCGTAACATTTTTCACGTCGAATGTTTGAATTGTTTCCTTTCCAACTTTGCT-TTTG 982
consensus_9224#1 TATTCGTAACATGTTTCACGTCGNATGTTTAAATTGTTTCCTTTTAAACCTCGAAACCTG 995
consensus_9224#4 ------------------------------------------------------------
consensus_9224#2 TATTCGTAACATGTTTCACGTCGAATGTTTAAATTGTTCCTCGGGCANATTCTTG----- 984
consensus_9224#3 -ATTCGTAACATGTTTCACGTCGAATGT---AACCGC------GGGGAATTCTGC----- 895
consensus_9224#0 TTCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCT 1020
consensus_9224#1 GG------------------------------------ 997
consensus_9224#4 --------------------------------------
consensus_9224#2 --------------------------------------
consensus_9224#3 --------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||