These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1206 fasta sequence [GACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCCGAAGGAGATGTTAAGATTTTACAGGAGCCAACCGAGCTTGACAGCAC----ACT--T---TGCGTAGAGGAACTCATAGTTCCGAATGATCTCGATGAGTCCAGCGCAGTTTTGTCCCACCCGGTCGAACAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCTGCCAAACAGCTGACGATCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGA-CGAAACGGAGGAGCAAGCCGACGGGGCGGATGATGGCATTGGATCGGAGGGTGACGACGCGCGTCCCAAGCGTGGCAGCGTCTCCGGCGCTGGATACACCGAAAGCATCGACTCGGGTCTACAGAGCCCGGCGCCGTGCGGTGGAGTAGCTTCGCCCGAAACCTCCTCCATGGTGAGCTCAATCGAAAGCCAACCGGCCAGCGGCGAATCGAGCCAGTCCGCTCTGACCCAGGTGGTAGGTTCGTGGCTGTTGCGTAA-CT-GGAAGTGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAATCCGCTGCTGATTCAGCGTCTC-GAGCGGTTCCACCAGCTGCAGCGCCGCGAACGCCGCGAGCGACTTCGGGGAGTGATCACGTCCGAGTCGGAGGGGGATGAAGAGGAAGAGTACGATCTCGAGGAAGAGGACACGGACAGTGACTACATGAGCGATGGACAAGGAAGGCTAGATCGCACACAGTCTGACGACTTCAACAGCTCCCAGCCGGGATCGCCGCTTAACTCCACCCAGCAGGAAGGTGCTGACGCTGCGCCGAAAACTCTGCCCGATGATGCGGGAATACTGTTGGTTGGACTGGATGAAGCCAAGCGACAGGCACCAGCCGTTCATGCCAACGGGGAACACAAATCCGCAGCAATGGTGCATCGGGCGGCCGACTCAAAGCGCTGCTCGATCATGTAGGGATCGGCTTAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACATTATACATACATGTTACGCGCGATGATAACCTGAGCAGCCTGTCATCCCCCACGAAACTCACACGTGACACACCGCTCATTGCCTTTTTCCTTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATAATCATGCAATTAG] [+] EMBL BX614693 [GACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCCGAAGGAGATGTTAAGATTTTACAGGAGCCAACCGAGCTTGACAGCAC ACT T TGCGTAGAGGAACTCATAGTTCCGAATGATCTCGATGAGTCCAGCGCAGTTTTGTCCCACCCGGTCGAACAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCTGCCAAACAGCTGACGATCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGA CGAAACGGAGGAGCAAGCCGACGGGGCGGATGATGGCATTGGATCGGAGGGTGACGACGCGCGTCCCAAGCGTGGCAGCGTCTCCGGCGCTGGATACACCGAAAGCATCGACTCGGGTCTACAGAGCCCGGCGCCGTGCGGTGGAGTTGCCTCGCCCGAAACCTCCTCCATGGTGAGCTCAATCGAAAGTCAACCGGCCAGCGGTGAATCGAGCCAGTCCGCTCTGACCCAGGTGGTAGGTTCGTGGCTGTTGCGAAAGCT GGAAGTGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAATCCGCTGCTGATTCAGCGTCTC GAGCGGTTCCACCAGCTGCAGCGCCGCGAACGCCGCGAGCGA ] [+] EMBL BX614121 [ ACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCCGAAGGAGATGTTAAGATTTTACAGGAGCCAACCGAGCTTGACAGCAC ACT T TGCGTAGAGGAACTCATAGTTCCGAATGATCTCGATGAGTCCAGCGCAGTTTTGTCCCACCCGGTCGAACAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCTGCCAAACAGCTGACGATCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGA CGAAACGGAGGAGCAAGCCGACGGGGC ] [+] EMBL CNS08LH8 [ AGCTTGACACCACACAGACTAATCACTGCGTAGAGGAACTCATAGTTCCGAATGATCTCGATGAGTCTAGCGCAGTTTTGTCTCACCCGGTCGAACAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCTGCCAAACAGCTGACGATCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGAGCGAAACGGAGGAGCAAGCCGACGGGGCGGATGATGGCATTGGATCGGAGGGTGACGACGCGCGTCCCAAGCGTGGCAGCGTCTCCGGCGCTGGATACACCGAAAGCATCGACTCGGGTCTACAGAGCCCGGCGCCGTGCGGTGGAGTAGCTTCGCCCGAAACCTCCTCCATGGTGAGCTCAATCGAAAGCCAACCGGCCAGCGGCGAATCGAGCCAGTCCGCTCTGACCCAGGTGGTAGGTTCGTGGCTGTTGCGTAA CT GGAAGTGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAATCCGCTGCTGATTCAGCGTCTCAAAAAAAAACCACCAGCTGCAGCGCCGCGAACGCC ] [+] EMBL CNS08G6E [ AACTCATAGTTCCGAATGATCTCGATGAGTCTAGCGCAGTTTTGTCTCACCCGGTCGAACAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCTGCCAAACAGCTGACGACCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGAGCGAAACGGAGGAGCAAGCCGACGGGGCGGATGATGGCATTGGATCGGAGGGTGACGACGCGCGTCCCAAGCGTGGCAGCGTCTCCGGCGCTGGATACACCGAAAGCATCGACTCGGGTCTACAGAGCCCGGCGCCGTGCGGTGGAGTAGCTTCGCCCGAAACCTCCTCCATGGTGAGCTCAATCGAAAGCCAACCGGCCAGCGGCGAATCGAGCCAGTCCGCTCTGACCCAGGTGGTAGGTTCGTGGCTGTTGCGTAA CTGGGAAGTGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAATCCGCTGCTGATTCAGCGTCTC GAGCGGTTCCACCAGCTGCAGCGCCGCGAACGCCGCGAGCGACTTCGGGGAGTGATCACGTCCGAGTCGGAGGGGGATGAAGAGGAAGAGTACGATCTCGAGGAAGAGGACACGGACAGTGACTACATGAGCGATGGACAAGGAAGGCTAGATCGCACACAGTCTGACGACTTCAACAGCTCCCAGCCGGGATCGCCGCTTAACTCCACCCAGCAGGAAGG ] [+] EMBL BM618188 [ acgcgtccgGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAATCCGCTGCTGATTCATCGTCTC GAGCGGTTCCATCAGCTGCAGCGCCGCGAACGCCGCGAGCGACTTCGGGGAGCGATCACTTCCGAGTCCGAGGGGGATGAAGATGAAGAGTACGATCTTGAGGGAGAGGACACGGACAGTGACTACATGAGCGATGGACAAGGAAGGCTCGATCGCACACAGTCTGACGACGCCAACAGCTCCCAGCCGGGATCGCCGCTTAACTCCACCCAGCAAGAAGGTGCTGACGCTGCGCCGAAAACTCTGCCCGATGATGCGGGAATACTGTTGGTTGGACTGGATGAAGCCAAGCGACAGGCACCAGCCGTTCATGCCAACGGGGAACACAAATCCGCAGCAATGGTGCATCGGGCGGCCGACTCAAAGCGCTGCTCGATCATGTAGGGATCGGCTTAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACATTATACATACATGTTACGCGCGATGATAACCTGAGCAGCCTGTCATCCCCCACGAAACTCACACGTGACACACCGCTCATTGCCTTTTTCCTTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATAATCATGCAATTAG] consensusID : consensus_9229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [AGATCGCCCAGGTTTAACTGCTCGATCATGTAGGGACTCGGTTAACATGACNCAGCCAGCCGCCGACACGCTCATCATACCTCACATTATACATACATGTTACGCGCGATGATAACCTGAGCAGCCTGTCATACCCCCACGAAACTACACACGTGACACACCGCTCATATGCCTTNTTTCCTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATAATCATGCAATTAGGTTGTTAAACACGGTACTACTAGTAGGAGAAAGAAAANGGAAAGCAGAAGACACACAGCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACTGTCGANCGAGTGTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGATACGGCGATACGGTATAATNGTTATTCGCANATTAGTATACTATGGCACTCGTACTATAATCGTACTCAACCCGACCCTACAGCGTTCGTTCACCGTACGAGCTGCTACACTGTTATAAACAGAGCTTCCACGAAAAGAAGCAAGCAAAACGGGTNTAACAAAAAAGAGAAACTAAAACTGCCAACTNTCCCGNATACAGGGCAAGGTGGGCGTNAAACACCACTTNAACAGGGCATCGTCGGAATGAGGCCGGCATCCTCNTCTNTCTGGNCGCCTAAACCTCCCCTGCCTGTCGAATGTNATAATTCCGCGCCGCAAACATACACAAAATAATCAANTAAACAAAANCACNATCTGCCACTNCAANA] [+] EMBL AL694255 [AGATCGCCCAGGTTTAACTGCTCGATCATGTAGGGACTCGGTTAACATGACNCAGCCAGCCGCCGACACGCTCATCATACCTCACATTATACATACATGTTACGCGCGATGATAACCTGAGCAGCCTGTCATACCCCCACGAAACTACACACGTGACACACCGCTCATATGCCTTNTTTCCTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATAATCATGCAATTAGGTTGTTAAACACGGTACTACTAGTAGGAGAAAGAAAANGGAAAGCAGAAGACACACAGCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACTGTCGANCGAGTGTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGATACGGCGATACGGTATAATNGTTATTCGCANATTAGTATACTATGGCACTCGTACTATAATCGTACTCAACCCGACCCTACAGCGTTCGTTCACCGTACGAGCTGCTACACTGTTATAAACAGAGCTTCCACGAAAAGAAGCAAGCAAAACGGGTNTAACAAAAAAGAGAAACTAAAACTGCCAACTNTCCCGNATACAGGGCAAGGTGGGCGTNAAACACCACTTNAACAGGGCATCGTCGGAATGAGGCCGGCATCCTCNTCTNTCTGGNCGCCTAAACCTCCCCTGCCTGTCGAATGTNATAATTCCGCGCCGCAAACATACACAAAATAATCAANTAAACAAAANCACNATCTGCCACTNCAANA] consensusID : consensus_9229#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 764 fasta sequence [GGTACTAATAGTAGGAGAAAGAAAAGGAAAGTAGCAGACACACAGCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACTGTCGACCGA--GTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGATACGGCGATACGGTTAATGTTATTCGTAAATTAGTATACTATGGCACTCGTACTATAATCGTACTCACCCCGCCCCTACAGCGTTCGTTCACCGTAGAGCTGCTAACTGTTAATAAACAGAGCTTCACGAAAAGAAGAAGAAGAAGGTT-TAAAAAAAGAGAACTAAAATGCACTTCCGTTACGGGGAGGT--GGG--GTTAAACATAAAAGGATCGTCGGATGGGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAAATAATCAATTTTTAGATTCTTTCTGCATTCATTAGACAGTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGTTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACATTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGC-AAATGCAAGCAATTTAAACGCTGCAGATGTAACTGCAGTAGGAAATAA-CTTAATATAAAAAAACAGCAGAAAAAAACAAACACAAAATGCCACAATAAAACTGA] [-] EMBL CNS08G6F [GGTACTAATAGTAGGAGAAAGAAAAGGAAAGTAGCAGAAAAACAGCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACTGTCGACCGA GTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGATACGGCGATACGGTTAATGTTATTCGTAAATTAGTATACTATGGCACTCGTACTATAATCGTACTCACCCCGCCCCTACAGCGTTCGTTCACCGTAGAGCTGCTAACTGTTAATAAACAGAGCTTCACGAAAAGAAGAAGAAGAAGGTT TAAAAAAAGAGAACTAAAATGCACTTCCGTTACGGGGAGGT GGG GTTAAACATAAAAGGATCGTCGGATGGGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAAATAATCAATTTTTAGATTCTTTCTGCATTCATTAGACAGTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGTTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACATTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGC AAATGCAAGCAATTTAAACGCTGCAGATGTAACTGCAGTAGGAAATAA CTTAATATAAAAAAACAGCAGAAAAAAACAAACACAAAATGCCACAATAAAA ] [+] EMBL BX608551 [ ATAGTAGGAGAAAGAAAAGGAAAGCAGCAGACACACAGCAGCACATGATCCTCAAAGGGGAAACATGCACACGACAGTACACCGTCACCCACTGTCGACCGA GTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGAGACGGC TACGGTTAATGTTATTCGTAAATTAGTATACTATGGCACTCGTACTATAATCGTACTCAACCCGCCCCTACAGCGTTCGTTCACCGTAGAGCTGCTAACTGTTAATAAACAGAGCTTCACGAAAAGAAGAAGAAGAAGGTTAAAAAAAAAGAAAAGTAAAATGCACTTCCGTTACGGGGAGGT GGGGTGTTAAAAAAGAAAGGATCGTCGGATGAGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAACTAATCAATTTTTAGATTCTTTCTGCATTCATTAGACAGTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGCTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACGTTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGC AAAAGCAAGCAATCTAAACGCTGCATATGTAACTG ] [+] EMBL BX620923 [ AGGAAAGTTTCCNACACACAGCAGCACATGATCCTCAAAGGGGAAACATGCACACGACAGTACACCGTCACCCACTGTCGACCGA GTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGAGACGGCGATACGGTTAATGTTATTCGTAAATTAGTATACTATGGCACTCGTACTATAATCGTACTCAACCCGCCCCTACAGCGTTCGTTCACCGTAGAGCTGCTAACTGTTAATAAACAGAGCTTCACGAAAAGAAGAAGAAGAAGGTTAAAAAAAAAGAAAAGTAAAATGCACTTCCGTTACGGGGAGGTGGGGG GTTAAAAAAGAAAGGATCGTCGGATGAGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAACTAATCAATTTTTAGATTCTTTCTGCATTCATTAGACAGNTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGCTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACGTTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGCAAAAAGCAAGCAATCTAAACGCTGCAGATGTAACTG ] [+] EMBL BM655922 [ ccgATGCACCCGACAGTACACCGTCACCCACTGTCGACCGAGTGTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAATTGCGAATCGCGATACGGCGATACGGTTAATGTTATTCGTAAATTAGTATACTATGGCACTCGTACTATAATCGTACTCACCCCGCCCCTACAGCGTTCGTTCACCGTAGAGCTGCTAACTGTTAATAAACAGAGCTTCACGAAAAGAAGAAGAAGAAGGTT TAAAAAAAGAGAACTAAAATGCACTTCCGTTACGGGGAGGT GGG GTTAAACATAAAAGGATCGTCGGATGGGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAAATAATCAATTTTTAGATTTTTTCTGCATTCATTAGACAGTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGTTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACATTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAACAAATGAGTTGCATGCCTGC AAATGCAAGCAATTTAAACGCTGCAGATGTAACTGC ] [-] EMBL CNS08LH9 [ GCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGTTTTATTCGCCGCAACATACAAAATAATCAATTTTTAGATTCTTTCTGCATTCATTAGACAGTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGTTCTCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACATTGTTGAACGTAATTCTTGCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGC AAATGCAAGCAATTTAAACGCTGCAGATGTTACTGCAGTAGGAAATAAGCTTAATATAAAAAAACAGCAGAAAAAAACAAACACAAAATGCCACAATAAAACTGA] consensusID : consensus_9229#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 706 fasta sequence [CCGCGATGTGTCAAATTAGTACAATTTGCTCAAAAAACTTTAAAATTTAGAAAAAAAGCTTATAGCGAAATCGCGTATATCGAGTATGGCGTATATCGGGGAATACCTGTATAGCCACCAGAGGAAGGCGCTGCTTCGCGTTCACATGAAAATGTGGTAGTGTGAAATCAAGTTTGCAAGCGGTAGGCTACGTCGATGCGTGCCCGTTTTTTTCTCTCGTGAAACCAGTACGGAAAAACTATTTGCAAATCGTAACACACGCACAAACGGAAGTGAGCACGGACCACGATAGAAATAATTAATTGGTTGTGCCAAAAACAAAAGGACAGGAGAGGCAGGAACGATCATTCAACGCGTTAGCGCCGGACGAAGGAGAAGCGGCAGGAAGGCAGGAACGATCCCCCAACGTGCTCGCGCTCCAACGTGCTCGCGAAGGCAGGAACGCGCCTGGTAGAGGAGAGGCGGCAGGAAGGTAGGGACGATCATCCAGCACGCTAGCGCAGCACTTGGGAACAGCGCGGGGGAGGCAAGCAGGAATAATTTTTAACGCGTGCACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGGCAAGACGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTAAATTGTGTGAGTATGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGA] [+] EMBL BM579806 [CCGCGATGTGTCAAATTAGTACAATTTGCTCAAAAAACTTTAAAATTTAGAAAAAAAGCTTATAGCGAAATCGCGTATATCGAGTATGGCGTATATCGGGGAATACCTGTATAGCCACCAGAGGAAGGCGCTGCTTCGCGTTCACATGAAAATGTGGTAGTGTGAAATCAAGTTTGCAAGCGGTAGGCTACGTCGATGCGTGCCCGTTTTTTTCTCTCGTGAAACCAGTACGGAAAAACTATTTGCAAATCGTAACACACGCACAAACGGAAGTGAGCACGGACCACGATAGAAATAATTAATTGGTTGTGCCAAAAACAAAAGGACAGGAGAGGCAGGAACGATCATTCAACGCGTTAGCGCCGGACGAAGGAGAAGCGGCAGGAAGGCAGGAACGATCCCCCAACGTGCTCGCGCTCCAACGTGCTCGCGAAGGCAGGAACGCGCCTGGTAGAGGAGAGGCGGCAGGAAGGTAGGGACGATCATCCAGCACGCTAGCGCAGCACTTGGGAACAGCGCGGGGGAGGCAAGCAGGAATAATTTTTAACGCGTGCACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGGCAAGACGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTAAATTGTGTGAGTATGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGA] consensusID : consensus_9229#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [CCGGACGAAACGAACGCGAACGAATCGACTGATCTGCTGGATGGATCGTCTCCGAACCATGCGCCACCGGTCGGTGATGTTGAGGCTGTGGCGCAGTACGACAGCAACACAGCTGCCGTTGTCGCTTACGGTGAGTGCGGTGACACCGCCGGTGATGGTCAGTTCTACGCGAACGGTGCCCTTCCCACGCTGGAGCAGGTGCCGGAAGAGATCATTCCGAACGGCGAACCACAGCTGGCTGGGGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTGTGTGACGTGCAGGAGCCGCAGGACTACTCGGAGAATGGGTTCTTCCCGTACACGAATGGGTATGATTTCGCTCAGTTCTACAATTCGCTTTGCTATCCCAACTGGTTCATGGATCAGTGCCGCATGTATGATGATGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTATGACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCAAAAAGCGGTTCCGTACCTTTGAGGAGATGCCAGCGCTA] [+] EMBL BM624737 [CCGGACGAAACGAACGCGAACGAATCGACTGATCTGCTGGATGGATCGTCTCCGAACCATGCGCCACCGGTCGGTGATGTTGAGGCTGTGGCGCAGTACGACAGCAACACAGCTGCCGTTGTCGCTTACGGTGAGTGCGGTGACACCGCCGGTGATGGTCAGTTCTACGCGAACGGTGCCCTTCCCACGCTGGAGCAGGTGCCGGAAGAGATCATTCCGAACGGCGAACCACAGCTGGCTGGGGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTGTGTGACGTGCAGGAGCCGCAGGACTACTCGGAGAATGGGTTCTTCCCGTACACGAATGGGTATGATTTCGCTCAGTTCTACAATTCGCTTTGCTATCCCAACTGGTTCATGGATCAGTGCCGCATGTATGATGATGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTATGACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCAAAAAGCGGTTCCGTACCTTTGAGGAGATGCCAGCGCTA] consensusID : consensus_9229#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence [GAAGAGAATGTTGCGTTGGAAGTAGAGGAAGTAATCGCTCAAAAAGTCATCCCCTCGCTAGCCGTTGCTGTTGCGGTGGAGGAGAAAACTAATCTAAACGAGACTGAGACTGAAATGCACCACCAACAAACGATGTCTGCGGACGTCGAGCAACTGGGAGCCAGGGAACAGGAGCCAGAAGTTGAAGTTATCGCCGAAGGAGTGATCGAGGAGAGCAAAAATGACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCCGAAGGAGATGTTAAGATTTTACAGGAGGCAAGCAGGAATAATTTTTAACGCGTACACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGGCAAGACGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTGAATTGTGTGAGTATGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGAGCGTAAGCATGTA] [+] EMBL BX616983 [GAAGAGAATGTTGCGTTGGAAGTAGAGGAAGTAATCGCTCAAAAAGTCATCCCCTCGCTAGCCGTTGCTGTTGCGGTGGAGGAGAAAACTAATCTAAACGAGACTGAGACTGAAATGCACCACCAACAAACGATGTCTGCGGACGTCGAGCAACTGGGAGCCAGGGAACAGGAGCCAGAAGTTGAAGTTATCGCCGAAGGAGTGATCGAGGAGAGCAAAAATGACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCCGAAGGAGATGTTAAGATTTTACAGGAGGCAAGCAGGAATAATTTTTAACGCGTACACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGGCAAGACGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTGAATTGTGTGAGTATGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGAGCGTAAGCATGTA] consensusID : consensus_9229#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [ACGCTGGAGCAGGTGCCGGAAGAGATCATTCCGAACGGCGAACCACAGCTGGCTGGGGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTGTGTGACGTGCAGGAGCCGCAGTACTACTCGGAGAATGGGTTCTTCCCGTACACGAATGGGTATGATTTCGCTCAGTTCTACAATTCGCTTTGCTATCCCAACTGGTTCATGGATCAGTGCCGCATGTATGATGATGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTATGACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCTGCTCGATCATGTAGGGATCGGCTTAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACAT] [+] EMBL BX616608 [ACGCTGGAGCAGGTGCCGGAAGAGATCATTCCGAACGGCGAACCACAGCTGGCTGGGGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTGTGTGACGTGCAGGAGCCGCAGTACTACTCGGAGAATGGGTTCTTCCCGTACACGAATGGGTATGATTTCGCTCAGTTCTACAATTCGCTTTGCTATCCCAACTGGTTCATGGATCAGTGCCGCATGTATGATGATGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTATGACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCTGCTCGATCATGTAGGGATCGGCTTAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 GACTCCAAATCGGTTGCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCATGTTGCC 60 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 GAAGGAGATGTTAAGATTTTACAGGAGCCAACCGAGCTTGACAGCACACTTTGCGTAGAG 120 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ----AGATCGCCCAGGTTTAACTGCTCGATCATGTAGGGACTCGGTTAACATGACNCAGC 56 consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 GAACTCATAGTTCCGAATGATCTCGATGAGTCCAGCGCAGTTTTGTCCCACCCGGTCGAA 180 consensus_9229#4 ------------------------------------------------------CCGGAC 6 consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 CAGCCGCCGACACGCTCATCATACCTCACATTATACATACATGTTACGCGCGATGATAAC 116 consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 ---------------------------CCGCGATGTGTCAAATTAGTACAATTTGCTCAA 33 consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 CAGCACCAAACAATGGACGTCCAGCTGACGATCGACACGCACGTGCTTACCAGTGCT-GC 239 consensus_9229#4 GAAACGAACGCGAACGAATCGACTGATCTGCTGGATGGATCGTCTCCGAACCATGCGCCA 66 consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 CTGAGCAGCCTGTCATACCCCCACGAAACTACACACGTGACACACCGCTCATATGCCTTN 176 consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 AAAACTTTAAAATTTAGAAAAAAAGCTTATAGCGAAATCGCGTATATCGAGTATGGCGTA 93 consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 CAAACAGCTGACGATCAGTTCCGTCAGCAGCCCCAAATTGCCCACACTCGAAGAGGACGA 299 consensus_9229#4 CCGGTCGGTGATGTTGAGGCTGTGGCGCAGTACGACAGCAACACAGCTGCCGTTGTCGCT 126 consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 TTTCCTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATAATCATGCAAT 236 consensus_9229#2 ------------------------------------------------------------ consensus_9229#3 TATCGGGGAATACCTGTATAGCCACCAGAGGAAGGCGCTGCTTCGCGTTCACATGAAAAT 153 consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 AACGGAGGAGCAAGCCGACGGGGCGGATGATGGCATTGGATCGGAGGGTGACGACGCGCG 359 consensus_9229#4 TACGGTGAGTGCGGTGACACCGCCGGTGATGGTCAGTTCTACGCGAACGGTGCCCTTCCC 186 consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 TAGGTTGTTAAACACGGTACTACTAGTAGGAGAAAGAAAANGGAAAGCAGAAGACACACA 296 consensus_9229#2 ---------------GGTACTAATAGTAGGAGAAAGAAAAGG-AAAGTAGCAGACACACA 44 consensus_9229#3 GTGGTAGTGTGAAATCAAGTTTGCAAGCGGTAGGCTACGTCGATGCGTGCCCGTTTTTTT 213 consensus_9229#5 ------------------------------------------------GAAGAGAATGTT 12 consensus_9229#0 TCCCAAGCGTGGCAGCGTCTCCGGCGCTGGATACACCGAAAGCATCGACTCGGGTCTACA 419 consensus_9229#4 ACGCTGGAGCAGGTGCCGGAAGAGATCATTC--CGAACGGCGAACCACAGCTGGCT--GG 242 consensus_9229#6 ACGCTGGAGCAGGTGCCGGAAGAGATCATTC--CGAACGGCGAACCACAGCTGGCT--GG 56 consensus_9229#1 GCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACT--GT 354 consensus_9229#2 GCAGCACATGATCCTCAAAGGGGAAACATGCACCCGACAGTACACCGTCACCCACT--GT 102 consensus_9229#3 CTCTCGTGAAACCAGTACGGAAAAACTATTTGCAAATCGTAACACACGCACAAACG--GA 271 consensus_9229#5 GCGT--TGGAAGTAG-AGGAAGTAATCGCT--CAAAAAGTCATCCCCTCGCTAGCC--GT 65 consensus_9229#0 GAGCCCGGCGCCGTGCGGTGGAGTAGCTTCGCCCGAAACCTCCTCCATGGTGAGCTCAAT 479 * * * consensus_9229#4 GGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTG-TGTGACGTGC 301 consensus_9229#6 GGAGCTGATGGCCGCTGATGCTGCTGCTGCTACTGCTGCTGGCGCAGTG-TGTGACGTGC 115 consensus_9229#1 CGANCGAGTGTGTGTGTGTGTGTGTGTGAGTGAGCTTTCCGATACAACGATATCAAAT-T 413 consensus_9229#2 CGACCGAGTGTGTGTGTGTGTGTGTG--AGTGAGCTTTCCGATACAACGATATCAAAT-T 159 consensus_9229#3 AGTGAGCACGGACCACGATAGAAAT---AATTAATTGGTTGTGCCAAAAAC-AAAAGGAC 327 consensus_9229#5 TGCTGTTGCGGTGGAGGAGAAAACT---AAT---CTAAACGAGACTGAGAC-TGAAATGC 118 consensus_9229#0 CGAAAGCCAACCGGCCAGCGGCGAATCGAGCCAGTCCGCTCTGACCCAGGTGGTAGGTTC 539 * * * consensus_9229#4 AGGA--GCCGCAGGACTACTCGGAGAATGGGT--TCTTCCCGTACACGAATGGGTATGAT 357 consensus_9229#6 AGGA--GCCGCAGTACTACTCGGAGAATGGGT--TCTTCCCGTACACGAATGGGTATGAT 171 consensus_9229#1 GCGA--ATCGCGATACGGC---GATACGGTAT--AATNGTTATTCGCANATTAGTATACT 466 consensus_9229#2 GCGA--ATCGCGATACGGC---GATACGGT-T--AATG-TTATTCGTAAATTAGTATACT 210 consensus_9229#3 AGGA--GAGGCAGGAACGATCATTCAACGCGT--TAGCGCCGGACGAAGGAGAAGCGGCA 383 consensus_9229#5 ACCA--CCAACA--AACGAT------GTCTGC--GGACGTCGAGCAACTGGGA----GCC 162 consensus_9229#0 GTGGCTGTTGCGTAACTGGAAGTGCACGAAACCGAGGAGTTGTTTGTACTGCCGAGCAAT 599 * * consensus_9229#4 TTCGCTCA-GTTCTACAATTCGCTTTG--CTATC-CCAACTG-GTTCATGGATCA---GT 409 consensus_9229#6 TTCGCTCA-GTTCTACAATTCGCTTTG--CTATC-CCAACTG-GTTCATGGATCA---GT 223 consensus_9229#1 ATGGCACTCGTACTATAATCGTACTCAACCCGAC-CCTACAGCGTTCGTTCACCGTACGA 525 consensus_9229#2 ATGGCACTCGTACTATAATCGTACTCACCCCGCC-CCTACAGCGTTCGTTCACCGTA-GA 268 consensus_9229#3 GGAAGGCAGGAACGATCCCCCAACGTGCTCGCGC-TCCAACGTGCTCGCGAAG-GCAGGA 441 consensus_9229#5 AGGGAACAGGAGCCAGAAGTTGAAGTTATCGC-C-GAAGGAGTGATCGAGGAGAGCAAAA 220 consensus_9229#0 CCGCTGCTGATTCAGCGTCTCGAGCGGTTCCACCAGCTGCAGCG-CCGCGAACGCCGCGA 658 * * * * * * * * consensus_9229#4 GCCGCAT----GTATGATGA-TGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTAT 464 consensus_9229#6 GCCGCAT----GTATGATGA-TGCTGGTTTACCATTATACTGCGGTGGCGAGTACGCTAT 278 consensus_9229#1 GCTGCTAC--ACTGTTA-TA-AACAGAGCTTCCACGAAAAGAAGCAAGCAAAACGGGTNT 581 consensus_9229#2 GCTGCTA---ACTGTTAATA-AACAGAGCTTC-ACGAAAAGAAG-AAGAAGAA--GGTTT 320 consensus_9229#3 ACG-CGC---CTGGTAGA---GGAGAGGCGGCAGGAA-GGTAGGGACGATCATCCAGCAC 493 consensus_9229#5 ATGACTC---CAAATCGGTT-GCTCAGGAACCTGAAGTGGTGGAAGAGATGTTGAATCAT 276 consensus_9229#0 GCGACTTCGGGGAGTGATCACGTCCGAGTCGGAGGGGGATGAAGAGGAAGAGTACGATCT 718 * * consensus_9229#4 GACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCAAAAAGCG-GTTCC 523 consensus_9229#6 GACAAATGAGGAGGTCTACGGACATCAGCCGAGCTTTAAGAAGCGCTGCT--CG-ATCAT 335 consensus_9229#1 AACAAAAAAGAGAAACTAAAACTGCCAACTNTCCCGNATACAGGGCAAGGTGGGCGTNAA 641 consensus_9229#2 AAAAAAAGAG---AACTAAAAT-----GCACTTCCGT-TACGGGG--AGGTGGG-GTTAA 368 consensus_9229#3 GCTAGCGCAG--CACTTGGGAACAGCGCGGGGGAGGCAAGCAGGAATAATTTTT-AACGC 550 consensus_9229#5 GTTGCCGAAG--GAGATGTTAAGATTTTACAGGAGGCAAGCAGGAATAATTTTT-AACGC 333 consensus_9229#0 CGAGGAAGAGGACACGGACAGTGACTACATGAGCGATGGACAAGGAAGGCTAGA--TCGC 776 ** consensus_9229#4 GTACCTTTGAG---GAGATGCCAGCGCTA------------------------------- 549 consensus_9229#6 GTAGGGATCGGCTTAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACAT--- 392 consensus_9229#1 ACACCACTTNA-ACAGGGCATCGTCGGAATGAGGCCGGCATCCTCNTCTNTC-TGGNCGC 699 consensus_9229#2 ACATAAAAGGA-TCGTCGGATGGGCGCTCTTCTTCTGGCGCTAACTCATGCTGTTGTTGT 427 consensus_9229#3 GTGCACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGG 610 consensus_9229#5 GTACACACCATTCGACGAAGACAACGCTGGATGAAAGGAAGAACGAGGAGAGAAGGCAGG 393 consensus_9229#0 ACACAGTCTGA-CGACTTCAACA--GCTCCCAGCCGGGATCGCCGCTTAACTCCACCCAG 833 * consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 CTAAACCTCCCCTGCCTGTCGAATG--TNATAATTCCGCGCCGCAAACATACACAAAATA 757 consensus_9229#2 TTTATTCGCCGCAACATACAAAATAATCAATTTTTAGATTCTTTCTGCATTCATTAGACA 487 consensus_9229#3 CAAGA---CGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTAAATTGTGTGAGTA 667 consensus_9229#5 CAAGA---CGGGTACGTGTGTATTCCGCACCGGTTTTCGGCAGTGTGAATTGTGTGAGTA 450 consensus_9229#0 CAGGAAGGTGCTGACGCTGCGCCGAAAACTCTGCCCGATGATGCGGGAATACTGTTGGTT 893 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ATCAAN--TAAACAAAANCACNATCTGCCACTNCAANA---------------------- 793 consensus_9229#2 GTTTTTCTTTGTTTTTTGTTTTGTTTTCTAGAAGAAGGAACACACCCAATGCTCCCGTTC 547 consensus_9229#3 TGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGA--------------------- 706 consensus_9229#5 TGTAAATTTGTATGTGCGAGTAAGAAGGTAAAATAAAGAGCGTAAGCATGTA-------- 502 consensus_9229#0 GGACTGGATGAAGCCAAGCGACAGGCACCAGCCGTTCATGCCAACGGGGAACACAAATCC 953 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 TCGCCTAAAAACACTCGATTAAAGCGCATTGTTTAATGCACATTGTTGAACGTAATTCTT 607 consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 GCAGCAATGGTGCATCGGGCGGCCGACTCAAAGCGCTGCTCGATCATGTAGGGATCGGCT 1013 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 GCTAGAGGATATATAACTATTAATAATAACGAATAAATGAGTTGCATGCCTGCAAATGCA 667 consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 TAACATGACGCAGCCAGCCGCCGACACGCTCATCATCCTCACATTATACATACATGTTAC 1073 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 AGCAATTTAAACGCTGCAGATGTAACTGCAGTAGGAAATAACTTAATATAAAAAAACAGC 727 consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 GCGCGATGATAACCTGAGCAGCCTGTCATCCCCCACGAAACTCACACGTGACACACCGCT 1133 consensus_9229#4 ------------------------------------------------------------ consensus_9229#6 ------------------------------------------------------------ consensus_9229#1 ------------------------------------------------------------ consensus_9229#2 AGAAAAAAACAAACACAAAATGCCACAATAAAACTGA----------------------- 764 consensus_9229#3 ------------------------------------------------------------ consensus_9229#5 ------------------------------------------------------------ consensus_9229#0 CATTGCCTTTTTCCTTCATGCTGAGATATTTCGTAAGAAGTTTGATCTAAGATTTTCATA 1193 consensus_9229#4 ------------- consensus_9229#6 ------------- consensus_9229#1 ------------- consensus_9229#2 ------------- consensus_9229#3 ------------- consensus_9229#5 ------------- consensus_9229#0 ATCATGCAATTAG 1206 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||