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Anopheles gambiae
cluster # 9244 cluster # 9244       Sequences # 15       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9244#0 length = 1246 sequences # 8  
consensus_9244#1 length = 783 sequences # 3  
consensus_9244#2 length = 581 sequences # 1  
consensus_9244#3 length = 489 sequences # 1  
consensus_9244#4 length = 425 sequences # 1  
consensus_9244#5 length = 118 sequences # 1  

consensusID : consensus_9244#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1246
fasta sequence
                              [AGATCGCCCGAGGTGTGNAACGCAGAAGATCGATGCGATTAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTCAGTCCTTTGTTTAT-TGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGAGTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCCCACCATAGCACAGGG-ATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCGTATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAACAAACGTAGAATGAA-CCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTTTGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAGTTGATGAATAATACGTCTGAATGCCAT-CAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTTTATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGA-TAAAGAACGGTCTCGCATTATAACCTATTACACTTTAATGC--ATGGAGTGAATTGGGGAAATGCAATTCATGCCTAATTCATGCATACATGACAATGGCGAAAGCACACATTCAAGAAAATACAAAACATTGATTTGGATCAAGCGATTTTCGCGATTGCGCAACATTCTACATGATCTCTGGAATTACTGTAATTGGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGGAATGAGGAATGTCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCTTAAAAAAAA]

[+] EMBL AL697140             [AGATCGCCCGAGGTGTGNAACGCAGAAGATCGATGCGATTAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTCAGTCC GTCTTACTCTGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGAGTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCCCACCATAGCACAGGG ATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BX614980             [                                                                                                                                                                                                                         GCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTTAG   TTTGTTTAT TGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGAGTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCCCACCATAGCACAGGG ATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCGTATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAACAAACGTAGAATGAACCCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCctt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL BX622234             [                                                                                                                                                                                                                                                                                                                                                                                TTTGTTTAT TGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGAAT  GAGAGTGTTTTCAGTACAATCGATGCTTTCCTTCCCATCCCATCCCTGTGTAACCCCACCATAGCACAGGGNATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCGTATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAACAAACGTAGAATGAA CCTACGGCAGAGCAGT  TGTGTACACAATACTCTGCTGCCTTCTTTGTGCTGAGATCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAGTTGATGAATAATACGTCTGAATGCCAT CAGGAGAAGAGGGTTGCTCTCTTTTTTGCTCTTTATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGATTAAAGAACAGTCTCGCATTATATCCTATTACACTTTAATGCATATGGAGTGAATTGGGAAAATGCAATTCATGCCTAATTCATGCATACATGACAATGGCGAATGCACACATTCAAGAAAATACAAAACATTGATTTGGATCAAGCGATTTTCGCGATTGCGCAACATTCTACATGATCTCTGGAATTACTGTAATTGGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGGAATGAGGAATGTCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCA                                                     ]
[+] EMBL BX614334             [                                                                                                                                                                                                                                                                                                                                                                                                            CGAGCGAGAATGGCAAAGGGTCGGAGTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCCCACCATAGCACAGGG ATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCGTATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAACAAACGTAGAATGAA CCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTTTGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAGTTGATGAATAATACGTCTGAATGCCAT CAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTTTATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGA TAAAGAACGGTCTCGCATTATAACCTATTACACTTTAATGC  ATGGAGTGAATTGGGGAAATGCAATTCATGCCTAATTCATGCATAC                                                                                                                                                                                                                                                                         ]
[+] EMBL AGA282043            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ACGATCGATCCGATCATGTAATGTGTCGTATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAACAAACGTAGAATGAA CCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTTTGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAGTTGATGAATAATACGTCTGAATGCCAT CAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTTTATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGA TAAAGAACGGTCTCGCATTATAACCTATTACACTTTAATGC  ATGGAGTGAATTGGGGAAATGCAATTCATGCCTAATTCATGCATACATGACAATGGGGAAAGCACACATTCANGAAAA                                                                                                                                                                                                                                         ]
[+] EMBL BX613734             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                AGAATGAA CCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTTTGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAGTTGATGAATAATACGTCTGAATGCCAT CAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTTTATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGA TAAAGAACGGTCTCGCATTATAACCTATTACACTTTAATGC  ATGGAGTGAATTGGGGAAATGCAATTCATGCCTAATTCATGCATACATGACAATGGCGAAAGCA                                                                                                                                                                                                                                                       ]
[-] EMBL AGA280344            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TACGTCTGAATG CATCCAGGAGAAGAGTGTTGCTCTCTTTTATGCTCTTTATCTATGGTATGTGCGTGCGCCGTGAACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGA TAAAGAACGGTCTCGCATTATAACCTATTACACTTTAATGC  ATGGAGTGAATTGGGGAAATGCAATTCATGCCTAATTCATGCATACATGACAATGGCGAAAGCACACATTCAAGAAAAAACAAAACATTGATTTGGTTCAAGCGATTTTCGCGATTGCGCAACATTCTACATGATCTCTGGAATTACTGTAATTGGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGGAATGAGGAATGTCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCTTAAAAAAAA]
[+] EMBL BM645757             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ccGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGGAATGAGGAATGTCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCT         ]


>consensus_9244#0 AGATCGCCCGAGGTGTGNAACGCAGAAGATCGATGCGATTAAAACAACAGTATGTAAGAG CAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATT TAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCC ATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAAC TCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAG AAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATG TTCAGTCCTTTGTTTATTGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGA GTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCC CACCATAGCACAGGGATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCG TATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAAC AAACGTAGAATGAACCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTT TGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAG TTGATGAATAATACGTCTGAATGCCATCAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTT TATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATT CCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGATAAAGA ACGGTCTCGCATTATAACCTATTACACTTTAATGCATGGAGTGAATTGGGGAAATGCAAT TCATGCCTAATTCATGCATACATGACAATGGCGAAAGCACACATTCAAGAAAATACAAAA CATTGATTTGGATCAAGCGATTTTCGCGATTGCGCAACATTCTACATGATCTCTGGAATT ACTGTAATTGGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGG AATGAGGAATGTCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCAAACATGA AATTGGCGCTACAATACAGACTGAATCCATGAAATCTTAAAAAAAA



consensusID : consensus_9244#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 783
fasta sequence
                              [TGTATGGTAAAAACCATGTTGCTATCAACAAAGTCAATTATGACAAACAATCGTTCCATTCGGGAACGCCGCCGCCGTACAACATTGCCGGAACACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAACGATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCAAAATAATAACCAGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGTCTACTTATTGGACTGGGCCGAACTAAAGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTAAAAAAACAACATGTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACATAAACAAATTTCACATACATACACACAAATACACA-CCCACCCACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCA-GGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGTGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTC]

[+] EMBL BX608839             [TGTATGGTAAAAACCATGTTGCTATCAACAAAGTCAATTATGACAAACAATCGTTCCATTCGGGAACGCCGCCGCCGTACAACATTGCCGGAACACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAACGATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCAAAATAATAACCAGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGTCTACTTATTGGACTGGGCCGAACTAAAGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTAAAAAAACAACATGTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACATAAACAAATTTCACATACATACACACAAATACACACCCCACCCACATACATCCAAAACAAAAGAAAACACACAC                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM630050             [                                                                                                                                                         ccgTGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCAAAATAATAACCAGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGTCTACTTATTGGACTGGGCCGAACTAAAGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGC    AGAGAGAGAGAGAGCGCTATAATGT AAAAAACAACATGTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACATAAACAAATTACACATACATACACACAAATACACA CCCACCCACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCA GGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGTGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTC]
[+] EMBL AL933564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        cgaggnACAAATACACA CCCACCCACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATT ATAACAACAGTATGTAAGAGCAGGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGG GCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAAT TTTCCATTTTACGTTTTATAACT                                            ]


>consensus_9244#1 TGTATGGTAAAAACCATGTTGCTATCAACAAAGTCAATTATGACAAACAATCGTTCCATT CGGGAACGCCGCCGCCGTACAACATTGCCGGAACACAGACGGCTGGAACTACTTCCGCAC AACCCTACGGGCAGCATCTGGCGTATATACCAACGATGGCTACGCATCACAATATCAATA TGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCAAAATAATAACC AGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGTCTACTTATTGGACTGGGCCGA ACTAAAGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGC GCTATAATGTAAAAAAACAACATGTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATT AACAAAACTGTAACAACATAAACAAATTTCACATACATACACACAAATACACACCCACCC ACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACA AAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAG GGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGTGCATAGAGTGCAAATAT TTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTC CATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAA CTC



consensusID : consensus_9244#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence
                              [CAGAATCGCCACGAGGTTNACAACAATCGTTCCATTCGGGCAACGCCGCCGCCGTACAACATTGCCGGAACACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAACGATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCGAAAATAATAACCAGGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGGTCTACTTATTGGACTGGGCCGAACTAAAGGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTACAAAAAACAAGCATGTGGTAGTGTGTTGTGACGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACGATAAGACAAATTTCACATACATAGCACACAAATACAGCGACCCCACNCCACATACATCCAAAACAAAAGAAAACACACAGCACAAGCAGAACGTAAACGATGGAGAAGGACAACAAAGAGGATAAGGCAAAAGGCAGAAGAATCGATGCGATGTAACN]

[+] EMBL BX469505             [CAGAATCGCCACGAGGTTNACAACAATCGTTCCATTCGGGCAACGCCGCCGCCGTACAACATTGCCGGAACACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAACGATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAGCGGTCAAAGACCGCGAAAATAATAACCAGGGGAAAGACTGCAAGCAAGCAGCAAGGCTATTCTGCGGTCTACTTATTGGACTGGGCCGAACTAAAGGTCTTAAGGAAGGGGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTACAAAAAACAAGCATGTGGTAGTGTGTTGTGACGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACGATAAGACAAATTTCACATACATAGCACACAAATACAGCGACCCCACNCCACATACATCCAAAACAAAAGAAAACACACAGCACAAGCAGAACGTAAACGATGGAGAAGGACAACAAAGAGGATAAGGCAAAAGGCAGAAGAATCGATGCGATGTAACN]


>consensus_9244#2 CAGAATCGCCACGAGGTTNACAACAATCGTTCCATTCGGGCAACGCCGCCGCCGTACAAC ATTGCCGGAACACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCG TATATACCAACGATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGAT TCCAACAGTAGCGGTCAAAGACCGCGAAAATAATAACCAGGGGAAAGACTGCAAGCAAGC AGCAAGGCTATTCTGCGGTCTACTTATTGGACTGGGCCGAACTAAAGGTCTTAAGGAAGG GGGACATAGCAAGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTACAAAAAAC AAGCATGTGGTAGTGTGTTGTGACGATAGATTCTTTCCAATAATTAACAAAACTGTAACA ACGATAAGACAAATTTCACATACATAGCACACAAATACAGCGACCCCACNCCACATACAT CCAAAACAAAAGAAAACACACAGCACAAGCAGAACGTAAACGATGGAGAAGGACAACAAA GAGGATAAGGCAAAAGGCAGAAGAATCGATGCGATGTAACN



consensusID : consensus_9244#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence
                              [CCGCCCACGCGTCCGCATACATACACACAAATACACACCCACCCACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGGCATAGAGTGCAAATATTTAGGGTCAGCGCTGATCAACTGGGGGGGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTTAGTTTGTTTATTGAGAGTTGAT]

[+] EMBL BM629240             [CCGCCCACGCGTCCGCATACATACACACAAATACACACCCACCCACATACATCCAAAACAAAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGGCATAGAGTGCAAATATTTAGGGTCAGCGCTGATCAACTGGGGGGGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTTAGTTTGTTTATTGAGAGTTGAT]


>consensus_9244#3 CCGCCCACGCGTCCGCATACATACACACAAATACACACCCACCCACATACATCCAAAACA AAAGAAAACACACACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAA CGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGA AGGAAGTGCGATGGTGGGGGGGGGGGGCATAGAGTGCAAATATTTAGGGTCAGCGCTGAT CAACTGGGGGGGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAA CTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTA CATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCAAACAAATACAA AATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATGTTTAGTTTGTTTATTG AGAGTTGAT



consensusID : consensus_9244#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 425
fasta sequence
                              [CAACATTTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTACCAAAACTGTACCAACTTAAACAAATTTCACATACATACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCANTCAAAAAAAA]

[-] EMBL AGA283595            [CAACATTTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTACCAAAACTGTACCAACTTAAACAAATTTCACATACATACACACAAACGTAACGATGGAAAGGACAACAAAGAGGATAAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATTTAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCANTCAAAAAAAA]


>consensus_9244#4 CAACATTTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAATTACCAAAACTGTACCAAC TTAAACAAATTTCACATACATACACACAAACGTAACGATGGAAAGGACAACAAAGAGGAT AAGGCAAACGCAGAAGATCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAG AGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATTTAGTGTCAGCG CTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGTTT TATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTCGAGATAGTA TCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAGAAGCANTCAAA AAAAA



consensusID : consensus_9244#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 118
fasta sequence
                              [TGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCT]

[+] EMBL BM595146             [TGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGAATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCT]


>consensus_9244#5 TGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATTCCCCTTTGATAGA ATAATGACGAATCAAACATGAAATTGGCGCTACAATACAGACTGAATCCATGAAATCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      AGATCGCCCGAGGTGTGNAACGCAGAAGATCGATGCGATTAAAACAACAGTATGTAAGAG 60
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      CAGGGATGTAGAGAAGCGAAGGAAGTGCGATGGTGGGGGGGGGCATAGAGTGCAAATATT 120
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      TAGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCC 180
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      ATTTTACGTTTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAAC 240
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      TCGAGATAGTATCGTACATAAAAAAATAAACACATTTTTCATACATAAAGACAAGCGAAG 300
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      AAGCAAACAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATGAATATG 360
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      TTCAGTCCTTTGTTTATTGAGAGTTGATCAGGCATCGAGCGAGAATGGCAAAGGGTCGGA 420
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      GTGAGAGAGTGTTTTCAGTACAATCGATGCTTTCTTTCCCATCCCATCCCTGTGTAACCC 480
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      CACCATAGCACAGGGATCCGATCATGAGGCTAACGATCGATCCGATCATGTAATGTGTCG 540
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      TATTGGTTTTTGGTATCGTTTTGGACGGATAGTCTTTGGATGAGTCTTGTTGCGATGAAC 600
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      AAACGTAGAATGAACCTTCGGCAGAGCAGTGGGGTGTACACAATACTCTGCTGCCTTCTT 660
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      ------------------------------------------------------------
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      TGTGCTGAGACCTGACAAATGGTTCATAAAACGCACATGTTTTAAGATGGAATATAGTAG 720
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      -------------------------TGTATGGTAAAAACCATGTTGCTATCAACAAAGTC 35
consensus_9244#2      --------------------------------------------CAGAATCGCCA----C 12
consensus_9244#0      TTGATGAATAATACGTCTGAATGCCATCAGGAGAAGAGTGTTGCTCTCTTTTTTGCTCTT 780
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      -------------------------CCGCCCACGCGTCCGC-ATACATACACACAAATAC 34
consensus_9244#4      -------------------CAACATTTGGTAGTGTGTTTTCGATAGATTCTTTCCAATAA 41
consensus_9244#1      AATTATGACAAACAATCGTTCCATTCGGG-AACGCCGCCGCCGTACAACATTGCCGGAAC 94
consensus_9244#2      GAGGTTNACAA-CAATCGTTCCATTCGGGCAACGCCGCCGCCGTACAACATTGCCGGAAC 71
consensus_9244#0      TATCTATGGTATGTGCGTGCGCCGTGTACGTGTTGGGCACAGTGGTGTGTACCTTTGATT 840
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ACA-----CCCAC-CCACATACATCCAAAACAAAAGAAAACA-----CACACACACAAAC 83
consensus_9244#4      TTA-----CCAAAACTGTACCAACTTAAACAAATTTCACATA-----CATACACACAAAC 91
consensus_9244#1      ACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAAC 154
consensus_9244#2      ACAGACGGCTGGAACTACTTCCGCACAACCCTACGGGCAGCATCTGGCGTATATACCAAC 131
consensus_9244#0      CCCCTTTGATAGAATAACTTGCATAACTTTTCCGGAAAGAAGTGAAATTCATGATAAAGA 900
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      G-TAACGATGGAA-AGGACAACAAAGAGGAT-AAGGCAAACGC-AGAAGATCGAT----G 135
consensus_9244#4      G-TAACGATGGAA-AGGACAACAAAGAGGAT-AAGGCAAACGC-AGAAGATCGAT----G 143
consensus_9244#1      GATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAG 214
consensus_9244#2      GATGGCTACGCATCACAATATCAATATGCATCAAAACATGCACCAGGATTCCAACAGTAG 191
consensus_9244#0      ACGGTCTCGCATTATAACCTATTACACTTTAATGCATGGAGTGAATTGGGGAAATGCAAT 960
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      CGATTAAAAAC------AACAGTATGTAAGAGCAGGGATGTAGAGAAGCG--AAGGAAGT 187
consensus_9244#4      CGATTAAAAAC------AACAGTATGTAAGAGCAGGGATGTAGAGAAGCG--AAGGAAGT 195
consensus_9244#1      CGGTCAAAGACCGC-AAAATAATAACCAGGG-AAAGACTGCAAGCAAGCAGCAAGGCTAT 272
consensus_9244#2      CGGTCAAAGACCGCGAAAATAATAACCAGGGGAAAGACTGCAAGCAAGCAGCAAGGCTAT 251
consensus_9244#0      TCATGCCTAATTCATGCATACATGACAATGGCGAAAGCACACATTCAAGAAAATACAAAA 1020
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      GCGATG------------------GTGGGG--GGGGGGGGCATAGAGTGCAAATATTT-- 225
consensus_9244#4      GCGATG------------------GTGGGG--GGGGG---CATAGAGTGCAAATATTT-- 230
consensus_9244#1      TCTGCG-TCTACTTATTGGACTGGGCCGAACTAAAG-TCTTAAGGAAGGGGGACATAGCA 330
consensus_9244#2      TCTGCGGTCTACTTATTGGACTGGGCCGAACTAAAGGTCTTAAGGAAGGGGGACATAGCA 311
consensus_9244#0      CATTGATTTGGATCAAGCGATTTTCGCGATTGCGCAACATTCTACATGATCTCTGGAATT 1080
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      --AGGGTCAGCGCTGATCAACTGGGGGGGTCCCTTGATCTCTATAAGGAAGGAATGTTTC 283
consensus_9244#4      --AGTGTCAGCGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTC 288
consensus_9244#1      AGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTA-AAAAAACAA-CATGTGGT 388
consensus_9244#2      AGAGAGCTAGCAGAGAGAGAGAGAGAGAGCGCTATAATGTACAAAAAACAAGCATGTGGT 371
consensus_9244#0      ACTGTAATTGGAGCGAATCGAATCGAATGCTACACACTATCCATCTTTTTACTATGTTGG 1140
consensus_9244#5      -------------------------------------TGCGTGCGCCGTGTACGTGTTGG 23
                                                           *                ***   

consensus_9244#3      CATTTTACGTT-TTATAACTCGCGCATACCATACCATACGCATATATGCATGATAC-ATA 341
consensus_9244#4      CATTTTACGTT-TTATAACTCGCGCATACCATACCATACGCATATATGCATGATAC-ATA 346
consensus_9244#1      AGTGTGTTTT--CGATAGATTCTTTCCAATAATTAACAAAACTGTAACAAC-ATAA-ACA 444
consensus_9244#2      AGTGTGTTGTGACGATAGATTCTTTCCAATAATTAACAAAACTGTAACAACGATAAGACA 431
consensus_9244#0      AATGAGGAATG-TCGTATAATCTGAATGACTAATGATAGAATAATGACGAATCAAACATG 1199
consensus_9244#5      GCACAGTGGTG-T-GTACC-TTTGATTCCCCTTTGATAGAATAATGACGAATCAAACATG 80
                               *     **                  * *      *    *    *  *  

consensus_9244#3      AACTCGAGATAGTATCGTACATAAAAAAA-TAAACACATTTTTCATACATA-AAGACAAG 399
consensus_9244#4      AACTCGAGATAGTATCGTACATAAAAAAA-TAAACACATTTTTCATACATA-AAGACAAG 404
consensus_9244#1      AATTTCACATA-CATA-CACACAAATACA----CACCCACCCACATACATCCAAAACAAA 498
consensus_9244#2      AATTTCACATA-CATAGCACACAAATACAGCGACCCCACNCCACATACATCCAAAACAAA 490
consensus_9244#0      AAATTGGCGCTACAATACAGACTGAATCCATGAAATCTTAAAAAAAA------------- 1246
consensus_9244#5      AAATTGGCGCTACAATACAGACTGAATCCATGAAATCT---------------------- 118
                      ** *         *    * *   *           *                       

consensus_9244#3      CGAAGAAGCAAA-CAAATACAAAATTAAATTAATTAATTCAAACGCAAAGGAGCAATATG 458
consensus_9244#4      CGAAGAAGCANT-CAAAAAAAA-------------------------------------- 425
consensus_9244#1      AGAAAACACACA-CACACA---AACGTAA-CGATGGA-AAGGACAACAAAGAGGATAAGG 552
consensus_9244#2      AGAAAACACACAGCACAAGCAGAACGTAAACGATGGAGAAGGACAACAAAGAGGATAAGG 550
consensus_9244#0      ------------------------------------------------------------
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      AATATGTTTAGTTTGTTTATTGAGAGTTGAT----------------------------- 489
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      CAAACG-CAGAAGA-TCGATGCGATTAAAAACAACAGTATGTAAGAGCAGGGATGTAGAG 610
consensus_9244#2      CAAAAGGCAGAAGAATCGATGCGATGTAACN----------------------------- 581
consensus_9244#0      ------------------------------------------------------------
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      AAGCGAAGGAAGTGCGATGGTGGGGGGGGGGGTGCATAGAGTGCAAATATTTAGTGTCAG 670
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      ------------------------------------------------------------
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      ------------------------------------------------------------
consensus_9244#4      ------------------------------------------------------------
consensus_9244#1      CGCTGATCAACTGGTGGTGTCCCTTGATCTCTATAAGGAAGGAATGTTTCCATTTTACGT 730
consensus_9244#2      ------------------------------------------------------------
consensus_9244#0      ------------------------------------------------------------
consensus_9244#5      ------------------------------------------------------------
                                                                                  

consensus_9244#3      -----------------------------------------------------
consensus_9244#4      -----------------------------------------------------
consensus_9244#1      TTTATAACTCGCGCATACCATACCATACGCATATATGCATGATACATAAACTC 783
consensus_9244#2      -----------------------------------------------------
consensus_9244#0      -----------------------------------------------------
consensus_9244#5      -----------------------------------------------------
                                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)