cluster # 9246

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Anopheles gambiae
cluster # 9246 cluster # 9246 Sequences # 15 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9246#0 length = 1032 sequences # 13

consensus_9246#1 length = 472 sequences # 1
consensus_9246#2 length = 427 sequences # 1

consensusID : consensus_9246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1032
fasta sequence

                              [GAAAAAGTGCATACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAGAGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG-AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG-ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC-C-CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC-CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTTCCTTCGGCGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA-TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA--AG-AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGACGAGAAGAAACGCATTACAAATTCGCTA-CTGTCGGCAATAAATACTAATATGCGATCCCGAAATCGATGCGATGCTTTATAACTCG]

[+] EMBL CNS08RG9             [GAAAAAGTGCATACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAGAGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCGCAGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACTTTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTTCCTTCGGCGGCACACCCCGTGAGTTAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA  AG AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAA                                                                                            ]
[+] EMBL CNS0909H             [           TACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAGAGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGGCATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTTCCTTCGGCGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGT                                                                                                                                                                                                                                                                                           ]
[+] EMBL CNS08TFC             [            ACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAGAGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTGTGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGTATTTAGTTCCTTCGGCGGCACACCCCGTGAGTGAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTA                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CNS08RG3             [             CTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAGAGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTTCCTTCGGCGGCACACCCCGTGAGTGAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA  AG AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAG                                                                                                  ]
[-] EMBL CNS08RGA             [                                                                              AACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTT CTTCGGCGGCACACCCCGTGAGTAAGAAAAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA  AG AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGACGAGAAGAAACGCATTACAAATTCGCTA CTGTCGGCAATAAATACTAATATGC                                 ]
[-] EMBL CNS0909I             [                                                                                     GAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTGCTGCGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTCGCGCATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGATGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTT CTTCGGCGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA  AG AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGACGAGAAGAAACGCATTACAAATTCGCTA CTGTCGGCAATAAATA                                          ]
[-] EMBL CNS08RG4             [                                                                                                                                TGAGGCTGGCG AGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAGTAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGATGATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCACACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTCTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATAGTT CTTCGGCGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAA TTTATTCAACACACAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGA  AG AAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGACGAGAAGAAACGCATTACAAATTCGCTA CTGTCGGCAATAAATACT                                        ]
[+] EMBL BX608482             [                                                                                                                                                                                                                                                                                                                         GTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGG ATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAG  TG CC  ACAGAATCCATTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACCAGCAGAAACGAAACTACCACACAAA TTTATTCAACACCTAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCAA  TGAAAAAAAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGAGGAGGAGAAACGCATTACAA                                                                   ]
[+] EMBL AGA284484            [                                                                                                                                                                                                                                                                                                                                                                                                                                                           ttTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAG  TG CC  ACAGAATCCATTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACCAGCAGAAACGAAACTACCACACAAA TTTATTCAACACCTAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTAC                                                                                                                                                              ]
[-] EMBL CNS08TFD             [                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTTTGTCCAAAAAAAGTGCCTTTCCCCTCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTTTCCCACAACTACGAGAACCC CTGGAAAACCCTGTAATTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AGA280060            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ttTTTTTTCATGGAG  TG CC  ACAGAATCCATTTCCCATCATATGAAGTTTACTTC C CATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACCAGCAGAAACGAAACTACCACACAAATTTTATTCAACACCTAACATCACGGCAGCG                                                                                                                                                                                                    ]
[-] EMBL AGA281758            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACCAGCAGAAACGAAACTACCACACAAA TTTATTCAACACCTAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCAATGAA AAAAAAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGAGGAGGAGAAACGCATTACAAATTCGCTACCTGTCGGCAATAAAT                                           ]
[-] EMBL AGA285788            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTGAAACCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAACAAGAAACGAAATTTACCAGCAGAAACGAAACTACCACACAAA TTTATTCAACACCTAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCAA  TGAAAAAAAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGAGGAGGAGAAACGCATTACAAATTCGCTACCTGTCGGCAATAAATACTAAAAAGCGATCCCGAAATCGATGCGATGCTTTATAACTCG]




>consensus_9246#0
GAAAAAGTGCATACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAG
AGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACT
TGATTTGCTGCGGCTGGCGAGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAG
TAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGAT
GATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCG
GTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGA
GTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGA
TGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGT
CTGTCCAAAAAGAGTGCCTTTCCCATCATATGAAGTTTACTTCCCATAAGAAAAAGTTAA
GGAAGTGTCCCACAACTACGAGAACCCCTGGAAAACCCTGTAATTGACAAAAAAAGGAAA
AACTAAACAGATTTGGAGGAAAAGAAAGGAAAGCAAGCATATAAGGGATCAGTGAAGATA
GTTCCTTCGGCGGCACACCCCGTGAGTAAGCGTAGAAAGAGACTGTGAGAAAGCAACTGA
AACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAATGAACAAGAAACGAAA
TTTACTAGCAGAAACGAAATTACCACACAAATTTATTCAACACACAACATCACGGCAGCG
TACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATGAATGAAGCGAAGAAAA
CAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGTGACGAGAAGAAACGCA
TTACAAATTCGCTACTGTCGGCAATAAATACTAATATGCGATCCCGAAATCGATGCGATG
CTTTATAACTCG

consensusID : consensus_9246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [AATCGCACGAGGTGTNAAACATGCCTGTTTTTTTTATTTCTATTGTCAAATTACAGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTGCCACAGAATCCATTTCCCATCATATGAAGTTTACTTCCCATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTATAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAAGCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAA]

[+] EMBL BX469574             [AATCGCACGAGGTGTNAAACATGCCTGTTTTTTTTATTTCTATTGTCAAATTACAGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATATGATGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTCATGGAGTGCCACAGAATCCATTTCCCATCATATGAAGTTTACTTCCCATAAGAAAAAGTTAAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAGATAGTTCCTCCGGTGGCACACCCCGTGAGTATAGCGTAGAAAGAGACTGTGAGAAAGCAACTGAAAGCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAA]




>consensus_9246#1
AATCGCACGAGGTGTNAAACATGCCTGTTTTTTTTATTTCTATTGTCAAATTACAGGTTT
TCCAGGAGTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTT
CATATGATGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTC
ATGGAGTGCCACAGAATCCATTTCCCATCATATGAAGTTTACTTCCCATAAGAAAAAGTT
AAGGAAGTGTCCCACAACTACGAGAACCCTTTGGAAAACCCTGTAATTGACAAAAAAAGG
AAAAACTAAACAGATTTGGAGGAAAAGAAAGGGAAGCAAGCAAATAAGGGATCAGTGAAG
ATAGTTCCTCCGGTGGCACACCCCGTGAGTATAGCGTAGAAAGAGACTGTGAGAAAGCAA
CTGAAAGCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAATGAA

consensusID : consensus_9246#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 427
fasta sequence

                              [TCCCCGAGGTTTAAGAGANNATTGGTCTNAAGCAACACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTTCCTTGGGCCCCTTTGGCCGCGCCTGGGGGCCGAGAAGCGAGAGAGCAGAGCAGAGCAGCAGCAGCAGAGAACGAACACCCGCTGGGGGGTAAAGGGTTNACACAAGGCCTAATGGACACAGTCTCAACACAAANACATTANATCGCACACAGGGTCATNACAAGTTTGCAAATCGGGGCAGATCCCGATGATTCACCNAAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCCGCCATAACCTGGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTAT]

[+] EMBL AL932625             [TCCCCGAGGTTTAAGAGANNATTGGTCTNAAGCAACACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACTTGATTTTCCTTGGGCCCCTTTGGCCGCGCCTGGGGGCCGAGAAGCGAGAGAGCAGAGCAGAGCAGCAGCAGCAGAGAACGAACACCCGCTGGGGGGTAAAGGGTTNACACAAGGCCTAATGGACACAGTCTCAACACAAANACATTANATCGCACACAGGGTCATNACAAGTTTGCAAATCGGGGCAGATCCCGATGATTCACCNAAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCCGCCATAACCTGGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTAT]




>consensus_9246#2
TCCCCGAGGTTTAAGAGANNATTGGTCTNAAGCAACACTCGCGAGCCGAGCGCAAAAGAA
AGCGCACTCATTACACTTGATTTTCCTTGGGCCCCTTTGGCCGCGCCTGGGGGCCGAGAA
GCGAGAGAGCAGAGCAGAGCAGCAGCAGCAGAGAACGAACACCCGCTGGGGGGTAAAGGG
TTNACACAAGGCCTAATGGACACAGTCTCAACACAAANACATTANATCGCACACAGGGTC
ATNACAAGTTTGCAAATCGGGGCAGATCCCGATGATTCACCNAAAAATGAAACACAAAAC
TGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACAC
TATCCGCCATAACCTGGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCAC
ACTTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9246#0      GAAAAAGTGCATACTCTACAACATCTAAATCGCCGGATCGAAAATGTGAAATAAATGAAG 60
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      AGAAATCGGTTTAAAGCAAACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACACT 120
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      TGATTTGCTGCGGCTGGCGAGAGCGAGAGAGAGAGAGAGAGAGAACGAACACCGTGGTAG 180
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      TAAAGCTATGAAATTAAAAAAATAATGAAAGTATAAAGTTTGCAAATCGGGAGATCCGAT 240
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      GATTCACAAAATGAAACACAAAACTGCCCAGTATCATCATACTGTTAGCGTTTTGCTTCG 300
consensus_9246#1      --------------------------------------------------AATCGCA-CG 9
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      GTGGCTTGAACGGTTCAAACACACTATCGCATACTGTCGCAGATACAGGGTTTTCCAGGA 360
consensus_9246#1      AGGTGTNAAACATGCCTGTTTTTTTTATTTCTATTGTCA-AATTACAGG-TTTTCCAGGA 67
consensus_9246#2      ------------------------------------------TCCCCGAGGTTTAAGAGA 18
                                                                   * *   ***    **

consensus_9246#0      GTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATA--- 417
consensus_9246#1      GTGCTTATAGCTATGGCACACTTTATTGACTCTTTTTTACAAGAAATGACCTTCATA--- 124
consensus_9246#2      NNATTGGT--CTNAAGCA-ACACTCGCGAGCCGAGCGCAAAAGAAAGCGCACTCATTACA 75
                          *  *  **   *** **  *   **  *      * ******   *  ****    

consensus_9246#0      --TGATGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTCAT 475
consensus_9246#1      --TGATGGTAATTGGACTCTATAGGATCTTTTTTGGACAAATCCAATAGGATTTTTTCAT 182
consensus_9246#2      CTTGATTTTCCTTGGGCCCCTTTGGCCGCGCCTGGGGGCCGAGAAGCGAGAGAGCAGAGC 135
                        ****  *  **** * *  * **       * **        *    **         

consensus_9246#0      GGAGTCTGTCCAAAAAGA-GTGCCTTTCCCATCATATGAAGTTTACTTCCCATAAGAAAA 534
consensus_9246#1      GGAG--TGCC---ACAGA-ATCCATTTCCCATCATATGAAGTTTACTTCCCATAAGAAAA 236
consensus_9246#2      AGAG-CAGCAGCAGCAGAGAACGAACACCCGCTGGGGGGTAAAGGGTTNACACAAGGCCT 194
                       ***   *       ***         ***       *        **  ** ***    

consensus_9246#0      AGTTAAGGAAGTGTCC-CACAACTACG--AGAACCCCT-GGAAAACCCTGTAA-TTGACA 589
consensus_9246#1      AGTTAAGGAAGTGTCC-CACAACTACG--AGAACCCTTTGGAAAACCCTGTAA-TTGACA 292
consensus_9246#2      AATGGACACAGTCTCAACACAAANACATTANATCGCACACAGGGTCATNACAAGTTTGCA 254
                      * *  *   *** **  *****  **   * * * *         *     ** **  **

consensus_9246#0      AAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGG-AAAGCAAGCATATAAGGGA 648
consensus_9246#1      AAAAAAGGAAAAACTAAACAGATTTGGAGGAAAAGAAAGG-GAAGCAAGCAAATAAGGGA 351
consensus_9246#2      AATCGGGGCAGATCCCGATGATTCACCNAAAAATGAAACACAAAACTGCCCAGTATCATC 314
                      **    ** * * *   *    *       *** ****    ** *   *   **     

consensus_9246#0      TCAGTGAAGATAGTTC-CTTCGGCGGCACACCCCGT--GAGTA-AGCGTAGAAAGAGACT 704
consensus_9246#1      TCAGTGAAGATAGTTC-CTCCGGTGGCACACCCCGT--GAGTATAGCGTAGAAAGAGACT 408
consensus_9246#2      ATACTGTTAGCGTTTTGCTTCGGTGGCTTGAACGGTTCAAACACACTATCCGCCATAACC 374
                        * **       **  ** *** ***     * **   *  * *   *        ** 

consensus_9246#0      GTGAGAAAGCAACTGAAACCCCTAATTGCGCTGTTAGCGAACGCGCGCGTTCCATTAAAA 764
consensus_9246#1      GTGAGAAAGCAACTGAAAGCCCTAATTGCGCTGTTAGCAGAGACGCGCGTTCCATTAAAA 468
consensus_9246#2      TGGTCGCAGATACAGGGTTTTCCAGGAGTGCTTATAGCTATGGCACACTTTAT------- 427
                        *    **  ** *      * *   * ***  ****     * * * **         

consensus_9246#0      TGAACAAGAAACGAAATTTACTAGCAGAAACGAAATTACCACACAAATTTATTCAACACA 824
consensus_9246#1      TGAA-------------------------------------------------------- 472
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      CAACATCACGGCAGCGTACACCGAGCGAGCGAAAGTAAAAGAACGAAATGCTACGAAATG 884
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      AATGAAGCGAAGAAAACAAAGCTTAAGCATCACATCCCTGAAACAAAAGAGCACCAAAGT 944
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      GACGAGAAGAAACGCATTACAAATTCGCTACTGTCGGCAATAAATACTAATATGCGATCC 1004
consensus_9246#1      ------------------------------------------------------------
consensus_9246#2      ------------------------------------------------------------
                                                                                  

consensus_9246#0      CGAAATCGATGCGATGCTTTATAACTCG 1032
consensus_9246#1      ----------------------------
consensus_9246#2      ----------------------------