|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1339 fasta sequence
[CAATCATCGCTTGCTACGGGCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTAGTTGAAGTTTCTAGCACCGTTTCGGAGAAGGTTAAAGAAGGTTCGCTGCTGGAAGGCGTCGGCTCGCAAGTCTCAAACCTGGCGACGAAGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGGCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGCGGCGTGAGCAGTCCGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGCGGCTCGACCGGCGGTTCCGGCC-GCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTCGGGGCCAGCATCGTCCGGCCAGCGCACATCCGCATCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGGTCAGCGAACAG---ACATTCGGCCAAATCGTCTGGTGCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATCAAACTATCGAAGAGGAAGAAAAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTCCCCCGGA-GGGAGGTAGCGCGGAACTGGAGAGCGAGCGTTACACCCCGCGCGGGGACTGT--CTTGTCCCTTTCCGTAACGAGCATGTAATGTGAATGTGAATTGTGTAATCCAATGTATTATAAGCAGAAAAAAAAGAAAAAGTAGAAAAAACTGGTTCAAAACCGACCGATCGCCTATCCAAGGAGAAACACTCCCATCCCAGATCTGGTGGTAGATAAGCAAAATGAGAGAGATACAATTATATACAGTTATAGAAGTGCGAAAACATGCAGCAGTTGGGGAGAGAGAGAAAGAGATAAAAAAATAGGAGAAAAGGGGAAGAGATATATAATACGAAGAGACACACAAGAAAATGTAGGCGCTATATATATACACATATTCTATATTCTAGTAG]
[+] EMBL BX628667 [CAATCATCGCTTGCTACGGGCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTAGTTGAAGTTTCTAGCACCGTTTCGGAGAAGGTTAAAGAAGGTTCGCTGCTGGAAGGCGTCGGCTCGCAAGTCTCAAACCTGGCGACGAAGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGGCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGCGGCGTGAGCAGTCCGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGCGGCTCGACCGGCGGTTCCGGCC GCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTCGGGGCCAGCATCGTCCGGCCAGCGCACATCCGCATCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGGCCAGCGAACAG ACATTCGGCCAAATCGTCTGGTGCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAA ]
[+] EMBL AL694220 [ agggTTNGGAGAAGGTT AAGAAGGTTCGCTGCTGGAAGGCGT GGCTCGCAAGTCTCAAACCTGGCGACGAAGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGCCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGCGGCGTGAGCAGTCCGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGTGGCTCGACCGGCGGTTCCGGCCTGCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTC GGGCCAGCATCGTCCGGC ]
[+] EMBL BX621183 [ AACCTGGCGACGAAGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGGCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGCGGCGTGAGCAGTCCGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGCGGCTCGACCGGCGGTTCCGGCC GCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTCGGGGCCAGCATCGTCCGGCCAGCGCACATCCGCATCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGGCCAGCGAACAG ACATTCGGCCAAATCGTCTGGTGCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATC AACTATCGAA ]
[+] EMBL BM576032 [ ccgGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGTGGCTCGACCGGCGGTTCCGGCC GCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTCGGGGCCAGCATCGTCCGGCCAGCGCACATCCGCATCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGGTCAGCGAACAG ACATTCGGCCAAATCGTCTGGTGCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGTAGCAGCAGTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATCAAACTATCGAAGAGGAAGAAAAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTCCCCCGGAGGGGAGGTAGC ]
[+] EMBL BM604850 [ ccgCGGCGGTTCCGGCC GCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGACAGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGGAACGGGTTCGAGTCGTACTCGGGGCCAGCATTGTCCGGCCAGCGCACATCTGCCTCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGATCGGCGAACAGACAACATTCGACGAAAGCGTCTGGTGCCGCGGCCGGTATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTTACAGTCGGAGTTGATGTGAATTTTAACGAATCAAACTATCGAAGAGGAAGAAAAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTCCCCCc ]
[+] EMBL BX605390 [ GCATCGTCCGGCCAGCGCACATCCGCATCGGCCGAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGCAAGTCCGGCAGTACGCGCCGCACAAGCAACGGGTCGGCGAACAGACAACATTCGGCGAAAGCGTCTGGTGCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGAGTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACGATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGGGCGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATCAAACTATCGAAGAGGAAGAAAAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTCCCCCGGA GGGAGGTAGCGCGGAACTGGAGAGCGAGCGTTACACCCCGCGCGGGGACTGTCCCTTGTCCCTTTCCGTAACGAGCATGTAATGTGAATGTGAATTGTGTAATCCAATGTATTATAAGCAGAA ]
[-] EMBL AGA283450 [ cCCAAGAAGGCGACCACCAACCCGGAAGACAATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGGAACTGAGCGCGGACGCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATCAAACTATCGAAGAGGAAGAAAAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTCCCCCGGA GGGAGGTAGCGCGGAACTGCAGGGCGAGCGTTACACCCCGCGCGGGGACTGT GTTGTCCCTTTCCGTAACGAGCATGTAATGTGAATGTGAATTGTGTAATCCAATGTATTATAAGCAAAAAAAA ]
[+] EMBL BM652584 [ ccgCGAGCATGTAATGTGAATGTGAATTGTGTAATCCAATGTATTATAAGCAGAAGAAGAAGAAAAAGTAGAAAAAACTGGTTCAAAACCGACCGATCGCCTATCCAAGGAGAAACACTCCCATCCCAGATCTGGTGGTAGATAAGCAAAATGAGAGAGATACAATTATATACAGTTATAGAAGTGCGAAAACATGCAGCAGTTGGGGAGAGAGAGAAAGAGATAAAAAAATAGGAGAAAAGGGGAAGAGATATATAATACGAAGAGACACACAAGAAAATGTAGGCGCTATATATATACACATATTCTATATTCTAGTAG]
consensusID : consensus_9323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 913 fasta sequence
[GCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCACCCCCTCCTCTTCACTTATCTGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGTGGGCGGCAATCGGAAGGCGAGAGAGTTTCTCGACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAGCGGAAGTACAGTACGCGAGCGGCTGCCCTGTACCGCGATCGGATTAGTACGCTGGCCCAGGGACAGCCGTGGGATGAGTCGGGTGCGCTGGCACGCGTGAACGGATCGGGCGGGTATGCGGCGAGCGGCAGCAGCGGTGGATCGACCGGCTCGATGACACATTCCAGAAGCAGTGGCTCGATGGGTGGTGGCAGTGGTGCTGGTGGCAAC---GGTGGCTACCAGAATGGAGGTGACAATTACTACCAGGACGGGGGAAGCTACCAGCAGTACCAGACGCCCGAGTTTAAGGCGCAGAAGGAAGATTTCTTCAGCCGCAAGCAGGAGGAAAACGCTGCCAGACCAGAAAACTTGCCACCGAACCAGGGCGGAAAGTATGCCGGTTTCGGATACACCATGGATCCACCG-CCAGAAGTCAATCACACGAGCTTTTCGACACGGTGCAATCATCGCTTGCTACGGTGCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTGACAGAGGTGGGCCGTAAA-GGATGGGGT-GGTTTCGGTGGCCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGC]
[+] EMBL BX621877 [GCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCACCCCCTCCTCTTCACTTATCTGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGTGGGCGGCAATCGGAAGGCGAGAGAGTTTCTCGACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAGCGGAAGTACAGTACGCGAGCGGCTGCCCTGTACCGCGATCGGATTAGTACGCTGGCCCAGGGACAGCCGTGGGATGAGTCGGGTGCGCTGGCACGCGTGAACGGATCGGGCGGGTATGCGGCGAGCGGCAGCAGCGGTGGATCGACCGGCTCGATGACACATTCCAGAAGCAGTGGCTCGATGGGTGGTGGCAGTGGTGCTGGTGGCAACGGTGGTGGCTACCAGAATGGAGGTGACAATTACTACCAGGACGGGGGAAGCTACCAGCAGTACCAGACGCCCGAGTTTAAGGCGCAGAAGGAAGATTTCTTCAGCCGCAAGCAGGAGGAAAACGCTGCCAGACCAGAA ]
[+] EMBL AL933223 [ ccgaggttACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAACGGAAGTACAGTACGCGAGCGGCTGCCCTGTACCGCGATCGGATTAGTACGCTGGCCCAGGGACAGCCGTGGGATGAGTCGGGTGCGCTGGCACGCGTGAACGGATCGNGCGGGTATGCGGCGAGCGGCAGTAGCGGTGGATCGACCGGCTCGATGACACATTCCAGAAGCAGTGGCTCGATGGGTGGTGGCAGTGGTGCTGGTGGCAAC GGTGGCTACCAGAATGGAGGTGACAATTACTACCAGGACGGGGGAAGCTACCAGCAGTACCAGACGCCCGAGTTTAAGGCGCAGAAGGAAGATTTCTTCAGCCGCAAGCAGGAGGAAAACGCTGCCAGACCAGAAAACTTGCCACCGAACCAGGGCGGAAAGTATGCCGGTTTCGGATACACCATGGATCCACCG CCAGAAGTCAATCACACGAGCTTTTCGACACGGTGCAATCATCGCTTGCTACGGTGCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTGACAGAGGTGGGCCGTAAA GGATGGGGT GGTTTCGGTGG ]
[+] EMBL BM581305 [ ccGGCACGCGTGAACGGATCGGGCGGGTATGCGGCGAGTGGCAGCAGCGGTGGATCGTCCGGCTCGATGACACATTCCAGAAGCAGTGGCTCGATGGGTGGTGGTAGTGGGGCTGGTGGCAAC GGTGGTTACCAGAATGGAGGGGACAATTACTACCAGGACGGAGGAAGCTACCAGCAGTACCAGACGCCCGAGTTTAAGGCGCAGAAGGAAGATTTCTTCAGCCGCAAGCAGGAGGAAAACGCTGCCAGACCAGAAAACTTGCCACCGAACCAGGGCGGAAAGTATGCCGGCTTCGGATACACCATGGATCCACCGCCCAGAAGTCAATCACACGAGCTTTTCGACACGGTGCAATCATCGCTTGCTACGG GCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTGACAGAGGTGGGCCGTAAAGGGATGGGGTGGGTTTCGGTGGCCCGGGCAGTGGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGC]
consensusID : consensus_9323#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 760 fasta sequence
[CCGGGAAAATTGATTTCTTTGCCACAAAACAATCGCTGAGTTAATGTGTAACATATTTCGGTGCAAAATCTACCCCGGCAAGGCATGACCGCGAACGGAAAAGGCGTCTTTGCTGGCGTTCGGTGAAAGAGCGTGTGCGAGTGTGCGTGTGCGTGTGTTTGTGTGCTACTGGCTGGTGAAAGTACGGCGCTGCAGCACTAGGAGAAGGAGAAGGTCTGTGGGAAAACCACGGCAGCATCTGCTCTCGACCCCACCACCCTTGCTAGCGTTTTGGCCTTTTTTTTCCTTCCGATCAACAATAGCGGTCGATTGTTGGGATATATTGTGTGTTGTTGCCGTGGTGTCGTATCTGTTCCCAAAGTCCTGACCGTGCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCTC-CCCCCTCACCCATCTGTCATCATGGCCAGTCCACGTACGCGACGAGTTCTGAGCGAGCTGAAACCATCGGACGGCAACAACAAATGCTTCGAATGTGGCACCCACAACCCCCAATGGGTCTCGGTGACGTACGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGTGGGCGGCAATCGGAAGGCGAGAGAGTTTCTCGACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAGCGGAAGTACAGT]
[+] EMBL BM624282 [CCGGGAAAATTGATTTCTTTGCCACAAAACAATCGCTGAGTTAATGTGTAACATATTTCGGTGCAAAATCTACCCCGGCAAGGCATGACCGCGAACGGAAAAGGCGTCTTTGCTGGCGTTCGGTGAAAGAGCGTGTGCGAGTGTGCGTGTGCGTGTGTTTGTGTGCTACTGGCTGGTGAAAGTACGGCGCTGCAGCACTAGGAGAAGGAGAAGGTCTGTGGGAAAACCACGGCAGCATCTGCTCTCGACCCCACCACCCTTGCTAGCGTTTTGGCCTTTTTTTTCCTTCCGATCAACAATAGCGGTCGATTGTTGGGATATATTGTGTGTTGTTGCCGTGGTGTCGTATCTGTTCCCAAAGTCCTGACCGTGCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCTC CCCCCTCACCCATCTGTCATCATGGCCAGTCCACGTACGCGACGAGTTCTGAGCGAGCTGAAACCATCGGACGGCAACAACAAATGCTTCGAATGTGGCACCCACAACCCCCAATGGGTCTCGGTGACGTACGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGA ]
[+] EMBL BM643043 [CCGGGAAAATTGATTTCTTTGCCACAAAACAATCGCTGAGTTAATGTGTAACATATTTCGGTGCAAAATCTACCCCGGCAAGGCATGACCGCGAACGGAAAAGGCGTCTTTGCTGGCGTTCGGTGAAAGAGCGTGTGCGAGTGTGCGTGTGCGTGTGTTTGTGTGCTACTGGCTGGTGAAAGTACGGCGCTGCAGCACTAGGAGAAGGAGAAGGTCTGTGGGAAAACCACGGCAGCATCTGCTCTCGACCCCACCACCCTTGCTAGCGTTTTGGCCTTTTTTTTCCTTCCGATCAACAATAGCGGTCGATTGTTGGGATATATTGTGTGTTGTTGCCGTGGTGTCGTATCTGTTCCCAAAGTCCTGACCGTGCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCTC CCCCCTCACCCATCTGTCATCATGGCCAGTCCACGTACGCGACGAGTTCTGAGCGAGCTGAAACCATCGGACGGCAACAACAAATGCTTCGAATGTGGCACCCACAACCCCCAATGGGTCTCGGT ]
[+] EMBL AGA284745 [ ACGAGTGAAGGTTTCCACCGTTTGTTAGGGTCTAAATTCACCCCCCCTCCTCTTCACTTATCTGTCATCATGGCCAGTCCACGTACGCGACGAGTTCTGAGCGAGCTGAAACCATCGGATGGCAACAACAAATGCTTCGAATGTGGCACCCACAACCCCCAGTGGGTCTCGGTGACGTACGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGGCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGTGGGCGGCAATCGGAAGGCGAGAGAGTTTCTCGACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAGCGGAAGTACAGT]
consensusID : consensus_9323#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence
[CCAGATTCCCGAGTTATGTATATTTTGTGTTGGTCTACATGTGTGGGGAGGAAAATTGATTCTTTGCACAAACAATCGCTGAGTTAATGTGTACATATTTCGGTGCAAAATCTAACCCGGAGGCATGANCGCGAACGGAAAAGGCGTCTTTGCTGGCGTTCGGTGAAAGAACGTGTGCGAATGTNCGTGTGTGTGTTCGTATGCTACTGGCTGGTGAAAGTACNGTCTTGCAGGCACTAGGGANAAAGGAGAAGGGGCCTGTGGGGAAAAAACACGGCAGCCATCTGGTCTCGAATCCCAACAACACCTTGGAGTAAAGCAGTTATTTCGAGGCCTATATATTATCCCTTTTTCGGAATCCAACCAAATAAGGCGGNGTACCGACTTGGTGGGGAATAATAATGGTGGTGGTTGTATGGCCGGTGGGGTNGGTACGCTATTCNTGGTTCCCCAACAGTTCCTGACCGGTTGCTAACGTTGTACGAACGTTGCANCGTTTCCAACCGTATGATTAGGGCTACCAAAAT]
[+] EMBL AL695201 [CCAGATTCCCGAGTTATGTATATTTTGTGTTGGTCTACATGTGTGGGGAGGAAAATTGATTCTTTGCACAAACAATCGCTGAGTTAATGTGTACATATTTCGGTGCAAAATCTAACCCGGAGGCATGANCGCGAACGGAAAAGGCGTCTTTGCTGGCGTTCGGTGAAAGAACGTGTGCGAATGTNCGTGTGTGTGTTCGTATGCTACTGGCTGGTGAAAGTACNGTCTTGCAGGCACTAGGGANAAAGGAGAAGGGGCCTGTGGGGAAAAAACACGGCAGCCATCTGGTCTCGAATCCCAACAACACCTTGGAGTAAAGCAGTTATTTCGAGGCCTATATATTATCCCTTTTTCGGAATCCAACCAAATAAGGCGGNGTACCGACTTGGTGGGGAATAATAATGGTGGTGGTTGTATGGCCGGTGGGGTNGGTACGCTATTCNTGGTTCCCCAACAGTTCCTGACCGGTTGCTAACGTTGTACGAACGTTGCANCGTTTCCAACCGTATGATTAGGGCTACCAAAAT]
consensusID : consensus_9323#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence
[ATTGCCAGATATCACATAAAGTTGTCCCCCGGAGGGAGTTCGCGCGGAACTGCAGGGCGAGTGTCACACCCCGCGCGGAGACTGTGTTCTCCCTTGCCGTAAAGAGCATGTAATGTGAATGTGAAGTGTGTAATCCAATGTATTATAAGCAAAAAACA]
[-] EMBL AGA283454 [ATTGCCAGATATCACATAAAGTTGTCCCCCGGAGGGAGTTCGCGCGGAACTGCAGGGCGAGTGTCACACCCCGCGCGGAGACTGTGTTCTCCCTTGCCGTAAAGAGCATGTAATGTGAATGTGAAGTGTGTAATCCAATGTATTATAAGCAAAAAACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 CAATCATCGCTTGCTACGGGCTGGAACGTCTTCTCGAAGGTGGCGAACGTGGCGAAGGAG 60
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 AACGCGCTCAAGTACGGCAGTATCGCCTCGCAAAAGGTAGTTGAAGTTTCTAGCACCGTT 120
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 TCGGAGAAGGTTAAAGAAGGTTCGCTGCTGGAAGGCGTCGGCTCGCAAGTCTCAAACCTG 180
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 GCGACGAAGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGGCCGGGCAGT 240
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 GGCAGCTACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGC 300
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 GGCGTGAGCAGTCCGATCAATGGCCGACAGCCGGGTGGCTACCAGCAACAGCGCGGCTCG 360
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 ACCGGCGGTTCCGGCCGCCGGGACGAATCGTCCTGGTCGAACAACGGCTGGTCGAACGAC 420
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ------------------------------------------------------------
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 AGTAACTCCAACAGTTTGCCTCAATCGTACCAGAACGGTGACAACGACGATGACGGCTGG 480
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ----------------------------GCTACGTGTACGAGTGAAGGTTTCCACCGTTT 32
consensus_9323#2 ------------------------------------------------------------
consensus_9323#3 ---------------------------------------------CCAGATTCCCGAGTT 15
consensus_9323#0 AACGGGTTCGAGTCGTACTCGGGGCCAGCATCGTCCGGCCAGCGCACATCCGCATCGGCC 540
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 GTTAGGCTCCAAATTCACCCCCACCCCCTCCTCTTCACTTATCTGGCATCTGGATCTGTC 92
consensus_9323#2 -------------------------------CCGGGAAAATTGATTTCTTTGCCACAAAA 29
consensus_9323#3 ATGTATATTTTGTGTTGGTCTACATGTGTGGGGAGGAAAATTGATT-CTTTGC-ACAAA- 72
consensus_9323#0 GAGCTGATGGCCAACGTGGACGTGCGCAACGAAAATGGCCCCGATCGCCACGCCAGCAGC 600
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 TCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTGTGCATCTGTCCTTCGTGCGGTCCGTGT 152
consensus_9323#2 CAATCGCTGAGTTAATGTGTAACATATT----TCGGTGCAA--AATCTACCCCGGCAAGG 83
consensus_9323#3 CAATCGCTGAGTTAATGTGTA-CATATT----TCGGTGCAA--AATCTAACCCGG--AGG 123
consensus_9323#0 AAGTCCGGCAGTACGCGCCGCACAAGCA----ACGGGTCAGCGAACAGACATTCGGCCAA 656
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 CGATGGACAAGTGGAAGGACATCGAGCTGGAGAAGATGAAGGTGGGCGGCAATCGGAAGG 212
consensus_9323#2 CATGACCGCG----AACGGAAAAGGCGTCTTTGCTGGCGTT-CGGTGAAAGAGCGTGTGC 138
consensus_9323#3 CATGANCGCG----AACGGAAAAGGCGTCTTTGCTGGCGTT-CGGTGAAAGAACGTGTGC 178
consensus_9323#0 ATCGTCTGGT----GCCGCGGCCGGCATCGATGAGGACTTTGCCGCCCTTGATATTAAGA 712
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 CGAGAGAGTTTCTCGACGCGCAGGACGACTGGGACGAGACGATGCCGATCCAGCGGAAGT 272
consensus_9323#2 GAGTGTGCGTGTGCGTGTGTTTGTGTGCTACTGGCTGGTGAAAGTACGGCGCTGCAG-CA 197
consensus_9323#3 GAATGTNCGTGTG--TGTGTTCGTATGCTACTGGCTGGTGAAAGTACNGTCTTGCAGGCA 236
consensus_9323#0 GTAACCGGGCGCCGAAAAGCAGCAGCACTTCCAAGAAGGCGAACAACAACCCGGAAGACG 772
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ACA-GTACGCGAGCGGCTGCCC-TGTACCGCGATCGGATTAGTACGCTGGCCCAGGGACA 330
consensus_9323#2 CTAGG--AGAAGGAGAAG--GTCTGTGGG--AAAACCACGGCAGC-ATCTGCTCTCGACC 250
consensus_9323#3 CTAGGGANAAAGGAGAAGGGGCCTGTGGGGAAAAAACACGGCAGCCATCTGGTCTCGAAT 296
consensus_9323#0 ATCTGTGGAACATGCTGAACAATTAGGTGCAGAGGGAGGAGTGGG-AACTGAGCGCGGAC 831
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 GCCGTGGGATGAGTCGGGTGCGCTGGCACGCGTGAACGGATCGGGCGGGTATGCGGCGAG 390
consensus_9323#2 CCACCACCCTTGCTAGCGTTTTGGCCTTTTTTTTCCTTCCGATCAACAATAGCGGTCGAT 310
consensus_9323#3 CC-CAACAACACCTTGGAGTAAAGCAGTTATTTCGAGGCCTAT-----ATATTATCCCTT 350
consensus_9323#0 GCACGTCCCCTTCTTTCACACCTTCACAGTCGGAGTTGATGTGAATTTTAACGAATCAAA 891
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 CGGCAGCAGCGGTGGATCGACCGGCTCGATGACACATTCCAGA----AGCAGTGGCTCGA 446
consensus_9323#2 TGTTGGGATATATTGTGTGTTGTTGCCGTGGTGTCGTATCTGTTCCCAAAGTCCTGACCG 370
consensus_9323#3 TTTCGGAATCCAAC-----CAAATAAGGCGGNGTACCGACTTGGTGGGGAATAATAATGG 405
consensus_9323#0 CTATCGAAGAGGAAGAA--AAAACAACCCTTTTGCCAGATATGACTTAAAGTAGTC-CCC 948
consensus_9323#4 ------------------------------ATTGCCAGATATCACATAAAGTTGTC-CCC 29
consensus_9323#1 TGGGTGGTGGCAGTGGTGCTGGTGGCAACGGTGGCT--ACCAGAATGGAGGTGACA--AT 502
*
consensus_9323#2 TGCTACGTGTACGAGTGAAGGTTTCCACCGTTTGTTAGGCTCCAAATTCACCCCCTCCCC 430
consensus_9323#3 TGGTGGTTGTATGGCCGGTGGGGTNG---GTACGCTA--TTCNTGGTTC--CCCAACAGT 458
consensus_9323#0 CGGAGGGAGGTAGCGCGGAACTGGAGAGCGAGCGTTACACCCCGCGCGGGGACTGTCTTG 1008
consensus_9323#4 CGGAGGGAGTTCGCGCGGAACTGCAGGGCGAGTGTCACACCCCGCGCGGAGACTGTGTTC 89
consensus_9323#1 TACTACCAGGACGGGGGAAGCTACCAGCAGTACCAGACGCCCGAGTTTAAGGCGCAGAAG 562
* * * * * * *
consensus_9323#2 CCTCACCCATCTGTCATCATGGCCAGTCCACGTACGCGAC--GAGTTCTGAGCGAGCTGA 488
consensus_9323#3 TCCTGACCGGTTGCTAACGTTGT------ACGAACGTTGC--ANCGTTT---CCAACCGT 507
consensus_9323#0 TCCCTTTCCGTAACGAGCATGTAA----TGTGAATGTGA---ATTGTGTAATCCAA-TGT 1060
consensus_9323#4 TCCCTTGCCGTAAAGAGCATGTAA----TGTGAATGTGA---AGTGTGTAATCCAA-TGT 141
consensus_9323#1 GAAGATTTCTTCAGCCGCAAGCAGGAG--GAAAACGCTGCCAGACCAGAAAACTTGCCAC 620
* * * *
consensus_9323#2 AACCATCGGACGGCAACAACAAATGCTTCGAATGTGGCACCCACAACCCCCAATGGGTCT 548
consensus_9323#3 ATGATTAGGGCTACCAAAAT---------------------------------------- 527
consensus_9323#0 ATTATAAGCAGAAAAAAAAGAAAAAGTAGAAAAAACTGGTTCAAAACCGACCGATCGCCT 1120
consensus_9323#4 ATTATAAGCAAAAAACA------------------------------------------- 158
consensus_9323#1 CGAACCAGGGCGGAAAGTATGCCGGTTTCGGATACACCATGGATCCACCGCCAGAAGTCA 680
*
consensus_9323#2 CGGTGACGTACGGCATCTGGATCTGTCTCGAGTGCTCGGGCAAGCACCGCGGCCTCGGTG 608
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 ATCCAAGGAGAAACACTCCCATCCCAGATCTGGTGGTAGATAAGCAAAATGAGAGAGATA 1180
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 ATCACACGAGCTTTTCGACACGGTGCAATCATCGCTTGCTACGGTGCTGGAACGTCTTCT 740
consensus_9323#2 TGCATCTGTCCTTCGTGCGGTCCGTGTCGATGGACAAGTGGAAGGACATCGAGCTGGAGA 668
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 CAATTATATACAGTTATAGAAGTGCGAAAACATGCAGCAGTTGGGGAGAGAGAGAAAGAG 1240
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 CGAAGGTGGCGAACGTGGCGAAGGAGAACGCGCTCAAGTACGGCAGTATCGCCTCGCAAA 800
consensus_9323#2 AGATGAAGGTGGGCGGCAATCGGAAGGCGAGAGAGTTTCTCGACGCGCAGGACGACTGGG 728
consensus_9323#3 ------------------------------------------------------------
consensus_9323#0 ATAAAAAAATAGGAGAAAAGGGGAAGAGATATATAATACGAAGAGACACACAAGAAAATG 1300
consensus_9323#4 ------------------------------------------------------------
consensus_9323#1 AGGTGACAGAGGTGGGCCGTAAAGGATGGGGTGGTTTCGGTGGCCCGGGCAGTGGCAGCT 860
consensus_9323#2 ACGAGACGATGCCGATCCAGCGGAAGTACAGT--------------------- 760
consensus_9323#3 -----------------------------------------------------
consensus_9323#0 TAGGCGCTATATATATACACATATTCTATATTCTAGTAG-------------- 1339
consensus_9323#4 -----------------------------------------------------
consensus_9323#1 ACAGCACCCCGTCCGGCAGTAACGATCAGTACAGCAACATCTCGTCGGACAGC 913
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||