|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1763 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGGTGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACG-ATTGGAAAGAAATTCA-TTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAAC--CACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGGCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCAGGCGCGCGAGTACGGCGAGCGCAAGATCAAGTCGAACATGGAGTGCGAAATCTTCCAGATACCGCTGGACGAGGCGCGGGACGCGTACCGGAAGGAAATCATCCACGAGGTGACGAGCGACACGGCGGCGGATCTGGACGCGGCGGTCGAGCGCGTGCGCGACTGGCTGGAGCAGTGGAAGGCGAAGCACAATAAATCGTAAA-CCCCCCCCATCAATTCAACCCCTCGTTCAACCGGACGTTGCGTTTTTGTGTTGGGTCGACGGAGCCGATCTGCCCGAAAGCAGGAAAGGAAGAAAAAAACAAAGCGAATTCGTCTCCGCGTTGCCAGCAGCGAAGCTACC-GACAAACCAACACCGGGCGTCAGGCGGCTCCGGGCAAGGTGGTACGAAAATAGAATTTGTACTCACTTGCACAAAACAACCAGCACGACGCAAACGCCAAACTGCTCCAGGGTTTCCTCGGCTTCACCACAATCAAACGAAAGCTTTTGCAACGCTCGGTGTCCCCCAGGCCGCCCATGCGGCAATGCAAGGCGGGAAAAGGATTGTACAGCGAGTGTGTCTTTCGGTGACCCACGTTCTTCGGGGGTGTAATTTGATATACCGCCAATGAGCATTTCAACTGTTTGTGGATGGTTGCCGAAAGGGGTTCACTTTTCATCCCTTCAACGGTTATTTATAGTTCAAGTGCGTTTTTTTTTGCTCTCAATCCAACCCCTGATTGGATGGATGNTTTAGATGGTTTTTTGATTTATGGATCAATATCAATCGGTATGATGNTTTGCTACTTTTTTG-AGCATAATTTGGATAACTGGCTGCTTGGATATTTAAAACAATACTTGATGCACTTTAGAAGATGTTTCATCCCGTGCCTTTTAAATCGTTGGATTTAATCTACTTCCAGCACTTTAAGTCGTTCTGTGGCCCGATACCCGGATATGATTTTTATTTTCAAACTGAAATAACTTTTAATTAAAAAAATTAATTATAACAAAATTCTTTAACATATCTTTAAGACAATTGGACTATCTTGAAGAGTAAATCATAAACATATAATATAACCAAAATCAGGTATGCCAGTCGTAGAGATGTAAATTTGGTCATTGAGATAAAAAAAAAGTCCAATTAAAACTAGATTTCATGCATC]
[+] EMBL BM641907 [CCGCGGACGCGTGGGCGGACGCGTGGGGTGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACG ATTGGAAAGAAATTCA TTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCGCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAAC CACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGGCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCAGGCGCGCGAGTACGGCGAGCGCAAGATCAAGTC ]
[+] EMBL BX626878 [ GGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGAATTGGAAAGAAATTCATTTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACCAC CACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGTCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCAG ]
[+] EMBL BM586070 [ ccGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACG ATTGGAAAGAAATTCA TTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCGCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAAC CACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGGCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCAGGCGCGCGAGTACGGCGAGCGCAAGATCAAGTCGAACATGGAGTGCGAAATCTTCCAGATACCGCTGGACGAGGCG ]
[+] EMBL BX620206 [ GCTATAAGCATTCCACCAGCCAAAAGGGTACG ATTGGAAAGAAATTCA TTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGTCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCAGGCGCGCGAGTACGGCGAGCGCAAGATCAAGTCGAACATGGAGTGCGAAATCTTCCANATACCGCTGGACGANGCGCGGGACGCGTACCGGAAGGAAATCATCCACGANGTGACGAGCGA ]
[+] EMBL BM655122 [ AGCTCATTTTGGAGGAGAAGCGCATCGCGGCGAAATGTGTTACTGTTGATGCCGTACACCGCGTGCAGTACACAAC CACACACACCATCACAGCACGCACGTTCCACCATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACG ]
[+] EMBL BX623637 [ CGACCGGCTGCAGGCGCGCGAGTACGGCGAGCGCAAGATCAAGTCGAACATGGAGTGCGAAATCTTCCAGATACCGCTGGACGAGGCGCGGGACGCGTACCGGAAGGAGATCATCCACGAGGTGACGAGCGACACGGCGGCGGATCTGGACGCGGCGGTCGAGCGCGTGCGCGACTGGCTGGAGCAGTGGAAGGCGAAGCACAATAAATCGTAAA CCCCCCCCATCAATTCAACCCCTCGTTCAACCGGACGTTGCGTTTTTGTGTTGGGTCGACGGAGCCGATCTGCCCGAAAGCAGGAAAGGAAGAAAAAAACAAAGCGAATTCGTCTCCGCGTTGCCAGCAGCGAAGCTACC GACAAACCAACACCGGGCGTCAGGCGGCTCCGGGCAAGGTGGTACGAAAATAGAATTTGTACTCACTTGCACAAAACAACCAGCACGACGCAAACGCCAAACTGCTCCAGGGTTTCCTCGGCTTCACCACAATCAAACGAAAGCTTTTGCAACGCTCGGTGTCCCCCAGGCCGCCCATGCGGCAATGCAAGGCGGGAAAAGGATTGTACAGCGAGTGCGTCTTTCGGTGACCCACGTTCTTCGGGGGTGTAATTTGATATACCGCCAATGAGCATTTCAACTGTTTGTGGATGGTTGCCGAAAGGGGTTCACTTTTCATCCCTTCAACGGTTATTTATAGTTCAAGTGCGTTTTTTTTTGCTCTCAATCCAACCCCTGATTGGATGGATGNTTTAGATGGTTTTTTGATTTATGGATCAATATCAATCGGTATGATGNTTTGCTACTTTTTTG AGCATAATTTGGATAACTGGCTGC ]
[+] EMBL BM654511 [ ccgCACGAGGTGACGAGCGACACGGCGGCGGATCTGGACGCGACGGTCGAGCGCGTGCGCGACTGGCTGGAGCAGTGGAAGGCGAAGCACAATAAATCGTAAACCCCCCCCCATCAATTCAACCCCTCGTTCAACCGGACGTTGCGTTTTTGTGTTGGGTCGACGGAGCCGATCTGCCCGAAAGCAGGAAAGGAAGAAAAAA AAAGCGAATTCGTCTCCGCGTTGCCAGCAGCGAAGCTACCGGACAAACCAAAACCGGGCGTCAGGCGGCTCCGGGCAAGGTGGTACGAAAATAGAATTTGTACTCACTTGCACAAAACAACCAGCACGACGCAAACGCCAAACTGCTCCAGGGTTTCCTCGGCTTCACCACAATCAAACGAAAGCTTTTGCAACGCTCGGTGTCCCCCAGGCCGCCCATGCGGCAATGCAAGGCGGGAAAAGGATTGTACAGCGAGTGTGTCTTTCGG ]
[+] EMBL BX628059 [ GGGTTTCCTCGGCTTCACCACAATCAAACGAAAGCTTTTGCAACGCTCGGTGTCCCCCAGGGCGCCCATGCGGCAATGCAAGGCGGGAAAAGGATTGTACAGCGAGTGTGTCTTTCGGTGACCCACGTTCTTCGGGGGTGTAATTTGATATACCGCCAATGAGCATTTCAACTGTTTGTGGATGGTTGCCGAAAGGGGTTCACTTTTCATCCCTTCAACGGTTATTTATAGTTCAAGTGCGTTTTTTTTTGCTCTCAATCCAAGCCCTGATTGGATGGATGTTTTAGATGTTTTTTTGATTTATGGATCAATATCAATCGTTATGATGTTTTGCTACTTTTTTGAAGCATAATTCGGATAGCTGGCTGCTTGGATATTTAAAACAATACTTGATGCACTTTAGAAGATGTTTCATCCCGTGCCTTTTAAATCGTTGGATTTAATCTACTTCCAGCACTTTAAGTCGTTCTGTGGCCCGATACCCGGATATGATTTTTATTTTCAAACTGAAATAACTTTTAATTAAAAAAATTAATTATAACAAAATTCTTTAACATATCTTTAAGACAATTGGACTATCTTGAAGAGTAAATCATAAACATATAATATAACCAAAATCAGGTATGCCAGTCGTAGAGATGTAAATTTGGTCATTGAGATAAAAAAAAAGTCCAATTAAAACTAGATTTCATGCATC]
consensusID : consensus_9327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[CCGGTTGCCAAGTGTGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCGCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGGTTCGCGGCGGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGAC]
[+] EMBL BM583401 [CCGGTTGCCAAGTGTGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCGCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGGTTCGCGGCGGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGAC]
[+] EMBL BM582453 [ GAAATTCATTTTTTTTTCGAGAATTATCGAACAGTGGCATCTAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGCAGAAAAACAAGCGCATTTTGGAGGAGAAGCGCATCTCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCCGAACTGTGCCGGCAGCTGG ]
consensusID : consensus_9327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 593 fasta sequence
[AGGCAAGAATCGCCCGAGGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGTCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGT]
[+] EMBL AL931962 [AGGCAAGAATCGCCCGAGGTATTGCATGTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGTCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGT]
[+] EMBL BX628963 [ AAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTG ]
[+] EMBL AGA285853 [ GCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACCACACACACACCATCACAGCACGCACGTTCCACGATGGTGCTGCCCAACATTCTCGTGACAGGAACGCCCGGCACGGGTAAGTCGGAACTGTGCCGGCAGCTGGCGGACAAGCTCGGCTTCCGGTGGCAGAACGTGAGCGAGATCGTGACCGAGCACAAGTTCGTGGAGGAGTACGACGAGGAGTTCGAGTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGCTGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCTGGTTCGCGTCGGTCTGGGTCGTCCGCTGCT ]
consensusID : consensus_9327#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 506 fasta sequence
[TTGCCCCGAGGTTTTTGTCGTCGGGGCCTGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAATGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACACACACACACATCACAGGACGCACGTTCCACGATGGTGCTGCCAACCATTCTCGTGACAGGAACGCCCGGCACGGGTTAAGTCGGAACTGTGCCGGGCCAGCTGGCGGACAAGGCTCGGGCTTCCGGTGGCCAGAACGTGAGCGAGCATCGTGACCGAGCACAAGTTCGCTGGCACGGAGTACGACGAGGAGTTCGAGGTTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGGAGCCCGCCTGATGCCAGGAGCGGCGGCT]
[+] EMBL AL929975 [TTGCCCCGAGGTTTTTGTCGTCGGGGCCTGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAATGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTGCTGTTGATGCCGTACACCGCGTGCAGTACACAACACACACACACATCACAGGACGCACGTTCCACGATGGTGCTGCCAACCATTCTCGTGACAGGAACGCCCGGCACGGGTTAAGTCGGAACTGTGCCGGGCCAGCTGGCGGACAAGGCTCGGGCTTCCGGTGGCCAGAACGTGAGCGAGCATCGTGACCGAGCACAAGTTCGCTGGCACGGAGTACGACGAGGAGTTCGAGGTTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGGAGCCCGCCTGATGCCAGGAGCGGCGGCT]
consensusID : consensus_9327#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[AGAATCCCCACGAGGNGTTATTGCATTGTTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTTGGGGCCCGTTTGGGTTTCTTGGATGCCGTACACCGCGGTGCAGTACACAACCACACAGCAGCACGCATCGAACAGCACGCACGTTCCACGATGGTGCTGCCCCAAGCA]
[+] EMBL BX466169 [AGAATCCCCACGAGGNGTTATTGCATTGTTGTTTGTCGTCGGGGCCGCTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAGAATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGGTAGAAAAACAAGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTTGGGGCCCGTTTGGGTTTCTTGGATGCCGTACACCGCGGTGCAGTACACAACCACACAGCAGCACGCATCGAACAGCACGCACGTTCCACGATGGTGCTGCCCCAAGCA]
consensusID : consensus_9327#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence
[GTCGAACATGGAGTGGGAAATTTTCCAGATACCGTTGGACGAGGCGCGGGACGCGTACCGGAAGGAGATCATCCACGGGGTGACGGGGGACACGGCGGCGGATTTGGACGCGACGGTCGAGCGCGTGCGGGAATGGTTGGAGCAGTGGAAGGCGAAGCACAATAAATCGTAAACCCCCCCATCAATTCAACCCCTGGTTCTTCCGGGAAAAAAAA]
[-] EMBL AGA284550 [GTCGAACATGGAGTGGGAAATTTTCCAGATACCGTTGGACGAGGCGCGGGACGCGTACCGGAAGGAGATCATCCACGGGGTGACGGGGGACACGGCGGCGGATTTGGACGCGACGGTCGAGCGCGTGCGGGAATGGTTGGAGCAGTGGAAGGCGAAGCACAATAAATCGTAAACCCCCCCATCAATTCAACCCCTGGTTCTTCCGGGAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9327#3 -----------------------------TTGCCCCGAGGTT-TTTGTCGTCGGGGCCTG 30
consensus_9327#4 ------------AGAATCCCCACGAGGNGTTATTGCATTGTTGTTTGTCGTCGGGGCC-G 47
consensus_9327#2 -----------AGGCAAGAATCGCCCGAGGTATTGCATG--TGTTTGTCGTCGGGGCC-G 46
consensus_9327#1 --------------CCGGTTGCCAAGTGTGTATTGCATG--TGTTTGTCGTCGGGGCC-G 43
consensus_9327#0 CCGCGGACGCGTGGGCGGACGCGTGGGGTGTATTGCATG--TGTTTGTCGTCGGGGCC-G 57
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 CTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAG 90
consensus_9327#4 CTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAG 107
consensus_9327#2 CTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAG 106
consensus_9327#1 CTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAG 103
consensus_9327#0 CTATAAGCATTCCACCAGCCAAAAGGGTACGATTGGAAAGAAATTCATTTTTTTTTCGAG 117
consensus_9327#5 -------------------------------GTCGAACATGGAGTGGGAAATTTTCCAGA 29
* * * * * * **** *
consensus_9327#3 AATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGG 150
consensus_9327#4 AATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGG 167
consensus_9327#2 AATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGG 166
consensus_9327#1 AATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGG 163
consensus_9327#0 AATTAGCGAACAGTGGCATCGAGGCGTCGTTGGAGCATCCTAAATCTGCACCATCCTTGG 177
consensus_9327#5 TACCGTTGGAC---------GAGGCGCGG--GACGCGTACCGGAAGGAGATCATCC---A 75
* * ** ****** * * ** * * * * *****
consensus_9327#3 TAGAAAAACAATGCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTG-----CT 205
consensus_9327#4 TAGAAAAACAA-GCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTTGGGGCCC 226
consensus_9327#2 TAGAAAAACAA-GCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTG-----CT 220
consensus_9327#1 CAGAAAAACAA-GCGCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTG-----CT 217
consensus_9327#0 CAGAAAAACAA-GCTCATTTTGGAGGAGAAGCGCATCGCGGTGAAATGTGTTG-----CT 231
consensus_9327#5 CGGGGTGACGGGGGACACGGCGGCGGATTTGGACGCGACGGTCGAGCGCGTGCGGGAATG 135
* ** * ** ** *** * * **** * * **
consensus_9327#3 GTT-----------GATGCCGTACACCGCG-TGCAGTACACAAC-ACACA----CACAC- 247
consensus_9327#4 GTTTGGGTTTCTTGGATGCCGTACACCGCGGTGCAGTACACAACCACACAGCAGCACGC- 285
consensus_9327#2 GTT-----------GATGCCGTACACCGCG-TGCAGTACACAACCACACA----CACACC 264
consensus_9327#1 GTT-----------GATGCCGTACACCGCG-TGCAGTACACAACCACACA------CACC 259
consensus_9327#0 GTT-----------GATGCCGTACACCGCG-TGCAGTACACAACCACACA------CACC 273
consensus_9327#5 GTT-----------GGAGCAGTGGAAGGCGAAGCACAATA-AATCGTAAACCCCCCCATC 183
*** * ** ** * *** *** * * ** * * *
consensus_9327#3 ATC--ACAGGACGCACGTTCCACGATGGTGCTGC--CAACCATTCTCGTGACAGGAACGC 303
consensus_9327#4 ATCGAACAGCACGCACGTTCCACGATGGTGCTGCCCCAAGCA------------------ 327
consensus_9327#2 ATC--ACAGCACGCACGTTCCACGATGGTGCTGC--CCAACATTCTCGTGACAGGAACGC 320
consensus_9327#1 ATC--ACAGCACGCACGTTCCACGATGGTGCTGC--CCAACATTCTCGTGACAGGAACGC 315
consensus_9327#0 ATC--ACAGCACGCACGTTCCACGATGGTGCTGC--CCAACATTCTCGTGACAGGAACGC 329
consensus_9327#5 AATTCAACCCCTGGTTCTTCCGGGAAAAAAAA---------------------------- 215
* * * **** **
consensus_9327#3 CCGGCACGGGTTAAGTCGGAACTGTGCCGGGCCAGCTGGCGGACAAGGCTCGGGCTTCCG 363
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 CCGGCACGGGT-AAGTCGGAACTGTGCCGG--CAGCTGGCGGACAAG--CTCGGCTTCCG 375
consensus_9327#1 CCGGCACGGGT-AAGTCGGAACTGTGCCGG--CAGCTGGCGGACAAG--CTCGGCTTCCG 370
consensus_9327#0 CCGGCACGGGT-AAGTCGGAACTGTGCCGG--CAGCTGGCGGACAAG--CTCGGCTTCCG 384
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 GTGGCCAGAACGTGAGCGAGCATCGTGACCGAGCACAAGTTCGCTGGCACGGAGTACGAC 423
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 GTGGC-AGAACGTGAGCGAG-ATCGTGACCGAGCACAAGTTCGTGGA---GGAGTACGAC 430
consensus_9327#1 GTGGC-AGAACGTGAGCGAG-ATCGTGACCGAGCACAAGTTCGTGGA---GGAGTACGAC 425
consensus_9327#0 GTGGC-AGAACGTGAGCGAG-ATCGTGACCGAGCACAAGTTCGTGGA---GGAGTACGAC 439
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 GAGGAGTTCGAGGTTGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGGAGCCC 483
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 GAGGAGTTCGAG--TGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGC 488
consensus_9327#1 GAGGAGTTCGAG--TGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGC 483
consensus_9327#0 GAGGAGTTCGAG--TGCCCGGTGCTGGACGAGGACCGGCTGCTCGACCATCTCGAGCCGC 497
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 GCCTGATGCCAGGAGCGGCGGCT------------------------------------- 506
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 TGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCT 548
consensus_9327#1 TGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCT 543
consensus_9327#0 TGATGCAGGAGGGCGGCTGCGCGGTCGAGTACCACAGCTCGGAGTTCTTCCCGGAGCGCT 557
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 GGTTCGC--GTCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGT------------- 593
consensus_9327#1 GGGTTCGCGGCGGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGAC-------- 595
consensus_9327#0 GGTTCGC--GGCGGTCTGGGTCGTCCGCTGCTCGACCTCGCTGCTGTACGACCGGCTGCA 615
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 GGCGCGCGAGTACGGCGAGCGCAAGATCAAGTCGAACATGGAGTGCGAAATCTTCCAGAT 675
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 ACCGCTGGACGAGGCGCGGGACGCGTACCGGAAGGAAATCATCCACGAGGTGACGAGCGA 735
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 CACGGCGGCGGATCTGGACGCGGCGGTCGAGCGCGTGCGCGACTGGCTGGAGCAGTGGAA 795
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 GGCGAAGCACAATAAATCGTAAACCCCCCCCATCAATTCAACCCCTCGTTCAACCGGACG 855
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 TTGCGTTTTTGTGTTGGGTCGACGGAGCCGATCTGCCCGAAAGCAGGAAAGGAAGAAAAA 915
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 AACAAAGCGAATTCGTCTCCGCGTTGCCAGCAGCGAAGCTACCGACAAACCAACACCGGG 975
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 CGTCAGGCGGCTCCGGGCAAGGTGGTACGAAAATAGAATTTGTACTCACTTGCACAAAAC 1035
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 AACCAGCACGACGCAAACGCCAAACTGCTCCAGGGTTTCCTCGGCTTCACCACAATCAAA 1095
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 CGAAAGCTTTTGCAACGCTCGGTGTCCCCCAGGCCGCCCATGCGGCAATGCAAGGCGGGA 1155
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 AAAGGATTGTACAGCGAGTGTGTCTTTCGGTGACCCACGTTCTTCGGGGGTGTAATTTGA 1215
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 TATACCGCCAATGAGCATTTCAACTGTTTGTGGATGGTTGCCGAAAGGGGTTCACTTTTC 1275
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 ATCCCTTCAACGGTTATTTATAGTTCAAGTGCGTTTTTTTTTGCTCTCAATCCAACCCCT 1335
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 GATTGGATGGATGNTTTAGATGGTTTTTTGATTTATGGATCAATATCAATCGGTATGATG 1395
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 NTTTGCTACTTTTTTGAGCATAATTTGGATAACTGGCTGCTTGGATATTTAAAACAATAC 1455
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 TTGATGCACTTTAGAAGATGTTTCATCCCGTGCCTTTTAAATCGTTGGATTTAATCTACT 1515
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 TCCAGCACTTTAAGTCGTTCTGTGGCCCGATACCCGGATATGATTTTTATTTTCAAACTG 1575
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 AAATAACTTTTAATTAAAAAAATTAATTATAACAAAATTCTTTAACATATCTTTAAGACA 1635
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 ATTGGACTATCTTGAAGAGTAAATCATAAACATATAATATAACCAAAATCAGGTATGCCA 1695
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 ------------------------------------------------------------
consensus_9327#4 ------------------------------------------------------------
consensus_9327#2 ------------------------------------------------------------
consensus_9327#1 ------------------------------------------------------------
consensus_9327#0 GTCGTAGAGATGTAAATTTGGTCATTGAGATAAAAAAAAAGTCCAATTAAAACTAGATTT 1755
consensus_9327#5 ------------------------------------------------------------
consensus_9327#3 --------
consensus_9327#4 --------
consensus_9327#2 --------
consensus_9327#1 --------
consensus_9327#0 CATGCATC 1763
consensus_9327#5 --------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||