cluster # 954

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Anopheles gambiae
cluster # 954 cluster # 954 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_954#0 length = 485 sequences # 1

consensus_954#1 length = 213 sequences # 1

consensusID : consensus_954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence

                              [TTTTGGAACAAACGCGAACGGCACCATGGGAATTAAGGGACTTTCACAGCTGATCGCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAAATTAAACAATTCTTCGGAAGAAAAGTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGTGCGGGCCGAGGGTGCCCAGCTGACGTCGGTGGACGGCGAGACGACGTCCCACCTGATGGGCACGTTCTACCGCACCATCCGGCTGCTCGAGAACGGCATCAAGCCGGTGTACGTGTTCGACGGCAAGCCGCCGGACCTGAAGTCGGGCGAGCTGAACAAGCGGGCCGAGCGGCGCGAGGAGGCCCAGAAAGCGCTGGACAAAGCGACCGAAGCCGGTGCGACGGAGGATATCGAGAAGTTCAACCGTCGGCTCGTGAAGGTGACGAAACACCACGCCAACGAAGCGAAGGAGCTGCTGCGGCTGATGGGCGTCCCGTACGTGG]

[+] EMBL BX602642             [TTTTGGAACAAACGCGAACGGCACCATGGGAATTAAGGGACTTTCACAGCTGATCGCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAAATTAAACAATTCTTCGGAAGAAAAGTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGTGCGGGCCGAGGGTGCCCAGCTGACGTCGGTGGACGGCGAGACGACGTCCCACCTGATGGGCACGTTCTACCGCACCATCCGGCTGCTCGAGAACGGCATCAAGCCGGTGTACGTGTTCGACGGCAAGCCGCCGGACCTGAAGTCGGGCGAGCTGAACAAGCGGGCCGAGCGGCGCGAGGAGGCCCAGAAAGCGCTGGACAAAGCGACCGAAGCCGGTGCGACGGAGGATATCGAGAAGTTCAACCGTCGGCTCGTGAAGGTGACGAAACACCACGCCAACGAAGCGAAGGAGCTGCTGCGGCTGATGGGCGTCCCGTACGTGG]




>consensus_954#0
TTTTGGAACAAACGCGAACGGCACCATGGGAATTAAGGGACTTTCACAGCTGATCGCCGA
TATCGCCCCGTTTGCGGTGAAGGAAGGCGAAATTAAACAATTCTTCGGAAGAAAAGTCGC
AATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGTGCGGGCCGAGGGTGCCCA
GCTGACGTCGGTGGACGGCGAGACGACGTCCCACCTGATGGGCACGTTCTACCGCACCAT
CCGGCTGCTCGAGAACGGCATCAAGCCGGTGTACGTGTTCGACGGCAAGCCGCCGGACCT
GAAGTCGGGCGAGCTGAACAAGCGGGCCGAGCGGCGCGAGGAGGCCCAGAAAGCGCTGGA
CAAAGCGACCGAAGCCGGTGCGACGGAGGATATCGAGAAGTTCAACCGTCGGCTCGTGAA
GGTGACGAAACACCACGCCAACGAAGCGAAGGAGCTGCTGCGGCTGATGGGCGTCCCGTA
CGTGG

consensusID : consensus_954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [TGAAACTTTTGGGGGCGCGCGACCGGCACCATGGGAAATAAGGGACTTTCACAGCTGATCGCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAGATTAATCAATTCTTCGGGAGAAAAGTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGGGCGGGCCGAGGGTGCCCAGCTGACGTCGGTGGACGGTGAGACGACT]

[+] EMBL AGA282154            [TGAAACTTTTGGGGGCGCGCGACCGGCACCATGGGAAATAAGGGACTTTCACAGCTGATCGCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAGATTAATCAATTCTTCGGGAGAAAAGTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGGGCGGGCCGAGGGTGCCCAGCTGACGTCGGTGGACGGTGAGACGACT]




>consensus_954#1
TGAAACTTTTGGGGGCGCGCGACCGGCACCATGGGAAATAAGGGACTTTCACAGCTGATC
GCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAGATTAATCAATTCTTCGGGAGAAAA
GTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGGGCGGGCCGAGGGT
GCCCAGCTGACGTCGGTGGACGGTGAGACGACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_954#0      -----TTTTGGAACAAACGCGAACGGCACCATGGGAATTAAGGGACTTTCACAGCTGATC 55
consensus_954#1      TGAAACTTTTGGGGGCGCGCGACCGGCACCATGGGAAATAAGGGACTTTCACAGCTGATC 60
                           *** *      ***** ************** **********************

consensus_954#0      GCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAAATTAAACAATTCTTCGGAAGAAAA 115
consensus_954#1      GCCGATATCGCCCCGTTTGCGGTGAAGGAAGGCGAGATTAATCAATTCTTCGGGAGAAAA 120
                     *********************************** ***** *********** ******

consensus_954#0      GTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGTGCGGGCCGAGGGT 175
consensus_954#1      GTCGCAATCGATGCATCGATGTGTCTGTACCAGTTCCTGATTGCCGGGCGGGCCGAGGGT 180
                     ********************************************** *************

consensus_954#0      GCCCAGCTGACGTCGGTGGACGGCGAGACGACGTCCCACCTGATGGGCACGTTCTACCGC 235
consensus_954#1      GCCCAGCTGACGTCGGTGGACGGTGAGACGACT--------------------------- 213
                     *********************** ********                            

consensus_954#0      ACCATCCGGCTGCTCGAGAACGGCATCAAGCCGGTGTACGTGTTCGACGGCAAGCCGCCG 295
consensus_954#1      ------------------------------------------------------------
                                                                                 

consensus_954#0      GACCTGAAGTCGGGCGAGCTGAACAAGCGGGCCGAGCGGCGCGAGGAGGCCCAGAAAGCG 355
consensus_954#1      ------------------------------------------------------------
                                                                                 

consensus_954#0      CTGGACAAAGCGACCGAAGCCGGTGCGACGGAGGATATCGAGAAGTTCAACCGTCGGCTC 415
consensus_954#1      ------------------------------------------------------------
                                                                                 

consensus_954#0      GTGAAGGTGACGAAACACCACGCCAACGAAGCGAAGGAGCTGCTGCGGCTGATGGGCGTC 475
consensus_954#1      ------------------------------------------------------------
                                                                                 

consensus_954#0      CCGTACGTGG 485
consensus_954#1      ----------