cluster # 973

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Anopheles gambiae
cluster # 973 cluster # 973 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_973#0 length = 977 sequences # 1

consensus_973#1 length = 642 sequences # 1

consensusID : consensus_973#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 977
fasta sequence

                              [GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGCTGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATTGCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGAGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGAACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCCATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGAACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGGGCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGGGGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTNTGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACGGGAGTTGCAAACCGCGG]

[+] EMBL BX467500             [GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGCTGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATTGCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGAGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGAACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCCATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGAACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGGGCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGGGGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTNTGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACGGGAGTTGCAAACCGCGG]




>consensus_973#0
GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGC
TGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATT
GCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACC
GGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCG
TGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGC
TGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGA
GGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAG
CAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCG
GTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGA
ACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATC
GATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCC
ATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGA
ACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGG
GCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGG
GGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTN
TGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACG
GGAGTTGCAAACCGCGG

consensusID : consensus_973#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCGCCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGCGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCAATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCTGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGACGCACTGTCCGTGAAGCGGCCCGCCCTGCTCGAAGACATCTTCGACGATGTGATCCGGTTCGTGCAGCATCCATCACCGACGACGCGCCAGATGGCCCACAATCTGGTGACGCGCTGGCTGAAGCAAAACCCGGGGCAGTGTTAGCTCGAACGGGACGGCACTGACGGCGTTCGTGCAGTGCCTGA]

[+] EMBL BM646106             [CCGCCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGCGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAGCAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCAATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCTGCGGTCGCGAGATATCGATGAAATTTCCATCCCACTAATGGAGCTGGACGCACTGTCCGTGAAGCGGCCCGCCCTGCTCGAAGACATCTTCGACGATGTGATCCGGTTCGTGCAGCATCCATCACCGACGACGCGCCAGATGGCCCACAATCTGGTGACGCGCTGGCTGAAGCAAAACCCGGGGCAGTGTTAGCTCGAACGGGACGGCACTGACGGCGTTCGTGCAGTGCCTGA]




>consensus_973#1
CCGCCGGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGC
TTTCGTGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCA
CGCGCTGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTC
GATGCGGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAG
CGCAGCAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAAC
GTCCGGTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCAT
CCGCAATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCTGCGGTCGCGAGA
TATCGATGAAATTTCCATCCCACTAATGGAGCTGGACGCACTGTCCGTGAAGCGGCCCGC
CCTGCTCGAAGACATCTTCGACGATGTGATCCGGTTCGTGCAGCATCCATCACCGACGAC
GCGCCAGATGGCCCACAATCTGGTGACGCGCTGGCTGAAGCAAAACCCGGGGCAGTGTTA
GCTCGAACGGGACGGCACTGACGGCGTTCGTGCAGTGCCTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_973#0      GCAGAATCGCGCACGAGGATCACTTCCACCTGTTCCATCAGGTGATGGGCATTTTGGAGC 60
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      TGCCGGCACCGCTCGTCTACCGGGACTGCTACCGGGAGGGGCTGCAGAACGGGTTGGATT 120
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      GCTTCTTCCAGCTGCTGAAACATCACGGTACGTTTAAGGAAAGCTACACCCTCATCTACC 180
consensus_973#1      -------------------------------------------------------CCGCC 5
                                                                            *  **

consensus_973#0      GGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAACCCGGCGACGGCGATCGCTTTCG 240
consensus_973#1      GGTTCGTGGAGTTCCTGCAGGCGTACATCGGGGCCAATCCGGCGACGGCGATCGCTTTCG 65
                     ************************************* **********************

consensus_973#0      TGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGC 300
consensus_973#1      TGGAGCAGTACAGCGACGTTCTGATCGATCTCGCCCATCAGCACTTTGATCTGCACGCGC 125
                     ************************************************************

consensus_973#0      TGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGA 360
consensus_973#1      TGCAGCAACTGGTGCAGGGGCTTTCGATGCTACGGCACACGACGGGCGGCGCCTCGATGC 185
                     *********************************************************** 

consensus_973#0      GGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAG 420
consensus_973#1      GGAAGCACTCCTCCGGGGGAGGCATTCTGGCCGACCTCGATCAGCTGGCAGCGAGCGCAG 245
                     ************************************************************

consensus_973#0      CAACGTACGAAGCATCGATGAGCGATAGTCGTGCGATAGTCGATGCAGGAGAAACGGCCG 480
consensus_973#1      CAACGTACGAAGGCTCGATGAGCGATAGTCGTGCGATAGTCGATGGAGGAGAAACGTCCG 305
                     ************  ******************************* ********** ***

consensus_973#0      GTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGGA 540
consensus_973#1      GTGGAAAACCGCCCGGTAGCAATGCAGCAGTGGGACTCATGCTTGCGCCCGCCATCCGCA 365
                     ********************************************************** *

consensus_973#0      ACGACTTGCTGCCCACGCACTGGACAGAGCTGGTGGCAGTGCTAGCGGTCGCGAGATATC 600
consensus_973#1      ATGACTTACTGCCCACGCACTGGACGGAGCTGGTGGCGGTGCT-GCGGTCGCGAGATATC 424
                     * ***** ***************** *********** ***** ****************

consensus_973#0      GATGAAATTTCCATCCCACTAATGGAGCTGGGACGCACTGTCCGTGAAGGCGGCCCGCCC 660
consensus_973#1      GATGAAATTTCCATCCCACTAATGGAGCTGG-ACGCACTGTCCGTGAAG-CGGCCCGCCC 482
                     ******************************* ***************** **********

consensus_973#0      ATGCTCGAGGACATCTTCGACGATGTGATCCCGGTTCGTTGCAGCATCCATCCCGNACGA 720
consensus_973#1      -TGCTCGAAGACATCTTCGACGATGTGATCC-GGTTCGT-GCAGCATCCATCACCGACGA 539
                      ******* ********************** ******* ************ *  ****

consensus_973#0      ACGCGCCAGATGGGCCACGAAGTCTGGTGACACCGCTGGGTGAAGGCAAAAGCCCGGGGG 780
consensus_973#1      -CGCGCCAGATGGCCCACAA--TCTGGTGACGC-GCTGGCTGAAG-CAAAACCCGGGGCA 594
                      ************ **** *  ********* * ***** ***** ***** ** ***  

consensus_973#0      GCCAGGTGGTTTAAAGGCTTTCGGAAACCGGGGGGAAANCGGGGGAGACCTTTAAACAGG 840
consensus_973#1      GT--GTTAGCTCGAACGGGACGGCA---CTGACGGCGTTCGTGCAGTGCCTGA------- 642
                     *   * * * *  ** *     * *   * *  **    ** *     ***         

consensus_973#0      GGCAGGTTTCGAGTNGNCACAGTGGCCCCTGTGANAAGACCCATTGAAGGGGACNNTGTN 900
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      TGAACGCGGTGGGTTGNGCACCACAGTGGCNGCGCNCTGGGGCACAAAGACAGCCGAACG 960
consensus_973#1      ------------------------------------------------------------
                                                                                 

consensus_973#0      GGAGTTGCAAACCGCGG 977
consensus_973#1      -----------------