|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 997 fasta sequence
[GGGAAAAAAGCAATAGATAGTGCTATGTATGTAGCAATGAAGGGGGTAGTAGCGGATGGACATCAGTTTATAAATGCTGCAATAGAGAAAGGAGCTAACGTTATTGTTTGTGAAGAAATTCCGTCCGATAAGAAAGAAAATGTAACCTATATTCAGGTTAAAGATACAGCTGTACGATTTGCTGGTGTCCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGTACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAA---CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC-AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC-GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG-CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC-GGTCGCCAAC-TTT-GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA-GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTTTTGATAGAAATGTATCAATGATGATGTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGCGAG]
[-] EMBL CNS09MR1 [GGGAAAAAAGCAATAGATAGTGCTATGTATGTAGCAATGAAGGGGGTAGTATTGGATGAACATCAGTTTATAAATGCTGCAATAGAGAAAGGAGCTAACGTTATTGTTTGTGAAGAAATTCCGTCCGATAAGAAAGAAAATGTAACCTATATTCAGGTTAAAGAAACAGCTGTACGATTTGCTGTTGTCCAAAGAGTGCTGAAACCACGTGGGTTGGAACAGAACTCGTACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCAGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTCGGGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGAACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGCGGGTCGCCAACTTTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGTATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGAGGCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTTTTGATAGAAAT ]
[+] EMBL CNS096H3 [ aAAAAAATAGTGCTATGTATGTAGCAATGAAGGGGGTAGTAGCGGATGGACATCAGTTTATAAATGCTGCAATAGAGAAAGGAGCTAACGTTATTGTTTGTGAAGAAATTCCGTCCGATAAGAAAGAAAATGTAACCTATATTCAGGTTAAAGATACAGCTGTACGATTTGCTGGTGTCCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGTACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCAGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACG AAAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGTTCCTGCTGCTGG TTTCGCCTCTA ]
[+] EMBL CNS09MR0 [ GTGCTATGTATGTAGCAATGAAGGGGGTAGTAGCGGATGGACATCAGTTTATAAATGCTGCAATAGAGAAAGGAGCTAACGTTATTGTTTGTGAAGAAATTCCGTCCGATAAGAAAGAAAATGTAACCTATATTCAGGTTAAAGATACAGCTGTACGATTTGCTGGTGTCCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGTACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCAGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTTTTGATAGAAATGTATCAATGATGATGTAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCGCGAG]
[+] EMBL CNS09KVV [ GCAATGAAGGGGGTAGTAGCGGATGGACATCAGTTTATAAATGCTGCAATAAAGAAAGGAGCTAACGTTATTGTATGTAAAGAAATT ]
[+] EMBL CNS091S9 [ cctaCTGGACGATTTGCTGGTGTCCAAAGAGTGCTGCAACC CGTGGGTTGGAACAGGACTCGTACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCAGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGCANATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTG ]
[+] EMBL AL933521 [ ccgaggttaTGT CAAAGAGTGCTGCA CACCTTGGTTGGAACAGGACTCGAACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAA CCTGCTGCCGTGGTCGTGGTGGTGTA AGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTCGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCG CAAC TTT GCCGGCGG CCTGTGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGATCACCGATGCGAGCCGAA CA CATTCCTGTCA ]
[+] EMBL BM633282 [ ccgGTGCTGCAACCACGTGGGTTGGAACAGGACTCGAACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAA CCTGCTGCCGTGGTCGTGGTGGTGTATAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGATCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCAATTCGAGCAAT ]
[+] EMBL BX625689 [ GCTGCAACCACGTGGGTTGGAACAGGACTCGAACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACCTCCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGATATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCT ]
[+] EMBL BX621188 [ ctTGNGTTGGAACAGGACTCGAACGATTTTCCCTGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCGCCCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCNTTGCACGA ]
[+] EMBL BM624530 [ CCGGCACAAGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACCTCCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGATATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTT ]
[+] EMBL CNS08UMY [ GGGGTGTTTGGCGCTTTGAAAAATCTCGGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGCAAACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGa ]
[+] EMBL BM582229 [ ccGCGCTTTGAAAAATCTCGGAA CCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGATCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCA ]
[-] EMBL CNS091SA [ CTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGCCGCCTTCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGCAAATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTTTTGATAGAAATGTATCAATGATNA GTAAAAAAAAAAAAAAAAAAAggc ]
[+] EMBL BX611119 [ TCTGTCCTGGTGC AACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTC GGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCG CCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGATATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAATCCAGTTTTGATAGAAATGTATCA ]
[-] EMBL CNS096H4 [ CTATTAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGAATGTCACGCGGCTATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGC GGTCGCCAAC TTTCGCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGAATTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCG ]
[-] EMBL CNS09KVW [ CGAATGGCCATGGC GGTCGCCAAC TTT GCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGTATTTACGTGCAATACACGACCACAGTGTGTAACGGGATGCAA ]
[-] EMBL CNS08UMZ [ TTCACGTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGA GCCTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTTTCTTCTGTCTATTGTTGAACGTAGAGTTTAAAATAAATTAAAGCCAGTTTTGA ]
consensusID : consensus_9733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence
[CNAGGCAAGAATTCGCCCCGAGTGTTTTCACGCTGGGTTGGAACAGGACTCGAACGATTTTCCCTGTCACAAGGATCTCGCCGTATTGGCGCGTGTTATGGCGCCTATATGAAAACACTCTTCGNGGAGACACTCCTGTCTGCCTGATGTGCTCTGCTAGTGATGCGACTGTAGCAAGCTGCAAGTGGTTGCCGGCACGTATCCTAGTCCCCTTGGGGTTGTCCAACTTGGATACCTGCAGGCTAGGGCCCGTTCCAAAACAAGGACNAGAAGCCAACGTTAACATGCNTTGGCCANCTGCTTCTTAACCTGGCCATCGGAAGTGGGTTTTAACCGCCTGGAAGAATGAGGCGCTGNGTTTACCTGCATTTGGCGATGANCTGGTTTACATGGAGGGCACCGAAATTTCAGGAGCCTAGGCTTTATTGGGACCCTGGAATGTTCCACCNTTTGGTGCCTTTGGCCCTTATGGTNGGACATTTTTCNCGNGTTTCCCTGGGGNACACGCCGTTTACCCGGTTAATGACCACTAAGGCTTTGCCCGGAAGTGCCCTAAGCAAANAACGATCNAACGTATTTTCCGACCCTAGGTGAGCAGCCCGACCAGTTTACCTAATAGGAGGTTAGATTAAACATGCCGCCCCTGGGTAATCAGGCATGGGGTACCATTTTTAATTCCCAGTGAGGNACAGCNCACAATGGGATGGCTCANACGGCGCTCACACGNTCTTGGGCAACACCAAACTGGGTGGGGGCGNAGAAANGCCCCTAACANGGGNATANACCACCCCTGGGGAAAAGACACNGAGTGAAACGTTTTGGCGTTTATAAAGCACCTTTTGGGGCGCANGACTTTATTCCGTGGGCGCAAGAAGTTATTACCCGTGTTTAACCCCACAAATTTTCTTTAGGGCGCACGCCGTAATCGAGCCTGCGGTTCAAACTTCTATAAAACACCTGACGGCTGGGGCACT]
[+] EMBL AL930711 [CNAGGCAAGAATTCGCCCCGAGTGTTTTCACGCTGGGTTGGAACAGGACTCGAACGATTTTCCCTGTCACAAGGATCTCGCCGTATTGGCGCGTGTTATGGCGCCTATATGAAAACACTCTTCGNGGAGACACTCCTGTCTGCCTGATGTGCTCTGCTAGTGATGCGACTGTAGCAAGCTGCAAGTGGTTGCCGGCACGTATCCTAGTCCCCTTGGGGTTGTCCAACTTGGATACCTGCAGGCTAGGGCCCGTTCCAAAACAAGGACNAGAAGCCAACGTTAACATGCNTTGGCCANCTGCTTCTTAACCTGGCCATCGGAAGTGGGTTTTAACCGCCTGGAAGAATGAGGCGCTGNGTTTACCTGCATTTGGCGATGANCTGGTTTACATGGAGGGCACCGAAATTTCAGGAGCCTAGGCTTTATTGGGACCCTGGAATGTTCCACCNTTTGGTGCCTTTGGCCCTTATGGTNGGACATTTTTCNCGNGTTTCCCTGGGGNACACGCCGTTTACCCGGTTAATGACCACTAAGGCTTTGCCCGGAAGTGCCCTAAGCAAANAACGATCNAACGTATTTTCCGACCCTAGGTGAGCAGCCCGACCAGTTTACCTAATAGGAGGTTAGATTAAACATGCCGCCCCTGGGTAATCAGGCATGGGGTACCATTTTTAATTCCCAGTGAGGNACAGCNCACAATGGGATGGCTCANACGGCGCTCACACGNTCTTGGGCAACACCAAACTGGGTGGGGGCGNAGAAANGCCCCTAACANGGGNATANACCACCCCTGGGGAAAAGACACNGAGTGAAACGTTTTGGCGTTTATAAAGCACCTTTTGGGGCGCANGACTTTATTCCGTGGGCGCAAGAAGTTATTACCCGTGTTTAACCCCACAAATTTTCTTTAGGGCGCACGCCGTAATCGAGCCTGCGGTTCAAACTTCTATAAAACACCTGACGGCTGGGGCACT]
consensusID : consensus_9733#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CGCCAGAGGTTTNGTCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGAACGATTTTCCCTGGCACAAGGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACTGCTGCCGTGGTCGTGGTGGTGTAAGCGCAAGGGTGCCGCTTCTGTCCTGGTGCAACCGAACGAGGCAGCCCTCAAACAGCAACATAATGCAGTTAACGCAGGAGTTTACCGAAAGCCGTCGTCGGGCGTCGGCCATCGCCGTTTGACGGATCCTGCTGCCTGGGTTTTTTCGCCCGTCTTACCAAATCCGGACCACAAAACGAATCCCCGGGCCCTCCAAGGTTTTACCCGAAGGGCTTACGAAAAACAAGGGAGNATGCACACGCGAAACCAGGGCCCTGACCGGATGTACTGGATTTGAGTTCTCCATTTGCCACCGATACCGGCTCACACCGGATGCTAAAGGAAGGCCAAAGGCATGAGCTAGGCAGGAACTCCAAAAACGAAACGCGTTAAGACTTCGCGGACCTGTCACGCCGGCTATTCCAGTGCCGCCCAAGGGCACAGGCCGAAAAACGAACCCGGGACATTGTGCCGCNATTGGGCCGGGGTCCTGGCCGAAACTTTTTTGGCCCCCTGTGGCTGTGGCCCCCTNGTGGTGCCCGGAAAACCGAAAAGGGGTATCCNGAACAAGGGCAAAT]
[+] EMBL AL696938 [CGCCAGAGGTTTNGTCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGAACGATTTTCCCTGGCACAAGGGATCTCGCCGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACTGCTGCCGTGGTCGTGGTGGTGTAAGCGCAAGGGTGCCGCTTCTGTCCTGGTGCAACCGAACGAGGCAGCCCTCAAACAGCAACATAATGCAGTTAACGCAGGAGTTTACCGAAAGCCGTCGTCGGGCGTCGGCCATCGCCGTTTGACGGATCCTGCTGCCTGGGTTTTTTCGCCCGTCTTACCAAATCCGGACCACAAAACGAATCCCCGGGCCCTCCAAGGTTTTACCCGAAGGGCTTACGAAAAACAAGGGAGNATGCACACGCGAAACCAGGGCCCTGACCGGATGTACTGGATTTGAGTTCTCCATTTGCCACCGATACCGGCTCACACCGGATGCTAAAGGAAGGCCAAAGGCATGAGCTAGGCAGGAACTCCAAAAACGAAACGCGTTAAGACTTCGCGGACCTGTCACGCCGGCTATTCCAGTGCCGCCCAAGGGCACAGGCCGAAAAACGAACCCGGGACATTGTGCCGCNATTGGGCCGGGGTCCTGGCCGAAACTTTTTTGGCCCCCTGTGGCTGTGGCCCCCTNGTGGTGCCCGGAAAACCGAAAAGGGGTATCCNGAACAAGGGCAAAT]
consensusID : consensus_9733#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence
[CGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACCTCCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGGCGTGCCATTTTTGTGCCGCCTTCTGTCCTGGTGCAACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTCGGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCGCCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGATATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGCGGTCGCCAACTTTGCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACC]
[+] EMBL BX617273 [CGTTTGGGGTGTTTGGCGCTTTGAAAAATCTCGGAACCTCCTGCTGCCGTGGTCGTGGTGGTGTAGAGCGCAAGGGTGGCGTGCCATTTTTGTGCCGCCTTCTGTCCTGGTGCAACGAACGAGCAGCCCTCAACAGCAACATAATGCAGTTACGCAGAGTTACCGAAGCGTCGTGGGCGTCGGCCATCGCGTTGACGATCCTGCTGCTGGTTTTCGCCTCTACAATCGACACAACATCCGCCCTCAGTTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGTACTGATTGATCTCATTGCACGATACGGTCACACGATGCTAAGAGCCAAAGATGAGCTAGAGAACTCCAAACGAACGGTAGACTTCGGACTGTCACGCGGATATTCAGGCGCCCAGGAAGCGAAACACCGAATGGCCATGGCGGTCGCCAACTTTGCCGGCGGCCCTGGGCGGAAACGAAGGTTCGAAGGAATCATGCTGTAAATTACTGACCACCGATGCGAGCCGAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9733#0 GGGAAAAAAGCAATAGATAGTGCTATGTATGTAGCAATGAAGGGGGTAGTAGCGGATGGA 60
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------------
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CATCAGTTTATAAATGCTGCAATAGAGAAAGGAGCTAACGTTATTGTTTGTGAAGAAATT 120
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------------
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CCGTCCGATAAGAAAGAAAATGTAACCTATATTCAGGTTAAAGATACAGCTGTACGATTT 180
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------CGCCAG 6
consensus_9733#1 ------------------------------------------------------CNAGGC 6
consensus_9733#0 GCTGGTGTCCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGTACGATTTTCCC 240
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 AGGTTTNGTCAAAGAGTGCTGCAACCACGTGGGTTGGAACAGGACTCGAACGATTTTCCC 66
consensus_9733#1 AAGAATTCGCCCCGAGTGTTTTCACG--CTGGGTTGGAACAGGACTCGAACGATTTTCCC 64
consensus_9733#0 TG-CACAAGG-ATCTCGCCGTTTGGG---GTGTT-TGGCGCTT---TGAAAAATCTC--- 288
consensus_9733#3 ------------------CGTTTGGG---GTGTT-TGGCGCTT---TGAAAAATCTC--- 32
consensus_9733#2 TGGCACAAGGGATCTCGCCGTTTGGG---GTGTT-TGGCGCTT---TGAAAAATCTC--- 116
consensus_9733#1 TGTCACAAGG-ATCTCGCCGTATTGGCGCGTGTTATGGCGCCTATATGAAAACACTCTTC 123
*** * ** ***** ****** * ****** ***
consensus_9733#0 -GGAACCT---GCTGCCGTGGTCGTGGTGGTGTAG----AGCGCAAGGGTG--------- 331
consensus_9733#3 -GGAACCTCCTGCTGCCGTGGTCGTGGTGGTGTAG----AGCGCAAGGGTGGCGTGCCAT 87
consensus_9733#2 -GGAACT----GCTGCCGTGGTCGTGGTGGTGTA-----AGCGCAAGGGTG--------- 157
consensus_9733#1 GNGGAGACACTCCTGTC-TGCCTGATGTGCTCTGCTAGTGATGCGACTGTAGCAAGCTGC 182
* * *** * ** * *** * * ** * **
consensus_9733#0 ---------CCGCCTTCTGTCCTGGTGCAAC-GAACGAG-CAGCCCTCAA---CAGCAAC 377
consensus_9733#3 TTTTG--TGCCGCCTTCTGTCCTGGTGCAAC-GAACGAG-CAGCCCTCAA---CAGCAAC 140
consensus_9733#2 ---------CCGC-TTCTGTCCTGGTGCAACCGAACGAGGCAGCCCTCAAA--CAGCAAC 205
consensus_9733#1 AAGTGGTTGCCGGCACGTATCCTAGTCCCCTTGGGGTTGTCCAACTTGGATACCTGCAGG 242
*** * **** ** * * * * * * * * ***
consensus_9733#0 ATAATGCAGTTA-CGCAGAG--TTACCGAAG--CGTCGT----GGGCGTCGGCCATC-GC 427
consensus_9733#3 ATAATGCAGTTA-CGCAGAG--TTACCGAAG--CGTCGT----GGGCGTCGGCCATC-GC 190
consensus_9733#2 ATAATGCAGTTAACGCAGGAGTTTACCGAAAGCCGTCGTC---GGGCGTCGGCCATC-GC 261
consensus_9733#1 CTAGGGCCCGTTCCAAAACAA-GGACNAGAAGCCAACGTTAACATGCNTTGGCCANCTGC 301
** ** * * * ** * * *** ** * ***** * **
consensus_9733#0 G--TTGACG-ATCCTGCTGCTGG----TTTTCGCCTCTACAATCGA--------CACAAC 472
consensus_9733#3 G--TTGACG-ATCCTGCTGCTGG----TTTTCGCCTCTACAATCGA--------CACAAC 235
consensus_9733#2 CGTTTGACGGATCCTGCTGCCTGGGTTTTTTCGCCCGTCTTACCAAATCCGGACCACAAA 321
consensus_9733#1 TTCTTAACCTGGCC-ATCGGAAGTGGGTTTTAACCGCCTGGAAGAATGAGGCGCTGNGTT 360
** ** ** * * **** ** * *
consensus_9733#0 -ATCCGCCCTCAG--TTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGT 529
consensus_9733#3 -ATCCGCCCTCAG--TTACCGAGGCTACAAACAGGAGATGAAGGAACAGCCCGACGATGT 292
consensus_9733#2 -ACGAATCCCCGGGCCCTCCAAGGTTTTACCCGAAGGGCTTACGAAAAACAAGGGAGNAT 380
consensus_9733#1 TACCTGCATTTGGCGATGANCTGGTT-TACATGGAGGGCACCGAAATTTCAGGAGCCTAG 419
* * ** * * * ** * *
consensus_9733#0 ACTGAT-TGATCTCATTG-------CACGATACGGTCACAC-GATGCTAAGAGCCAAAGA 580
consensus_9733#3 ACTGAT-TGATCTCATTG-------CACGATACGGTCACAC-GATGCTAAGAGCCAAAGA 343
consensus_9733#2 GCACACGCGAAACCAGGG-------CCCTGACCGGATGTACTGGATTTGAGTTCTCCATT 433
consensus_9733#1 GCTTTATTGGGACCCTGGAATGTTCCACCNTTTGGTGCCTTTGGCCCTTATGGTNGGACA 479
* * * * * * ** * * * *
consensus_9733#0 TGAGCTAGAGA---ACTCCAAACGAACGG----TAGACTTCGGACTGTCACGCG-GCTAT 632
consensus_9733#3 TGAGCTAGAGA---ACTCCAAACGAACGG----TAGACTTCGGACTGTCACGCG-GATAT 395
consensus_9733#2 TGCCACCGATACCGGCTCACACCGGATGC----TAAAGGAAGGCCAAAGGCATGAGCTAG 489
consensus_9733#1 TTTTTCNCGNGTTTCCCTGGGGNACACGCCGTTTACCCGGTTAATGACCACTAAGGCTTT 539
* * * * ** * * *
consensus_9733#0 TC----AGGCGCCCAGGAAGCGAAACA-CCGAATGGCCATGGCGGTC-------GCCAAC 680
consensus_9733#3 TC----AGGCGCCCAGGAAGCGAAACA-CCGAATGGCCATGGCGGTC-------GCCAAC 443
consensus_9733#2 GC----AGGAACTCCAAAAACGAAACG-CGTTAAGACTTCGCGGACCTGTCAC-GCCGGC 543
consensus_9733#1 GCCCGGAAGTGCCCTAAGCAAANAACGATCNAACGTATTTTCCGACCCTAGGTGAGCAGC 599
* * * * * *** * * * * * *
consensus_9733#0 TTTGCCGGCGGCCCT---GGGCGG--AAACGAAGGTT--CG---------AAGGAATCAT 724
consensus_9733#3 TTTGCCGGCGGCCCT---GGGCGG--AAACGAAGGTT--CG---------AAGGAATCAT 487
consensus_9733#2 TATTCCAGTGCCGCCCAAGGGCAC--AGGCCGAAAAA--CG---------AACCCGGGAC 590
consensus_9733#1 CCGACCAGTTTACCTAATAGGAGGTTAGATTAAACATGCCGCCCCTGGGTAATCAGGCAT 659
** * * ** * * ** ** *
consensus_9733#0 GCTGTAA-ATTACTGACCACCGATGCGAGCCGAACCACCATTCCTGTCATGTTATCATGA 783
consensus_9733#3 GCTGTAA-ATTACTGACCACCGATGCGAGCCGAACC------------------------ 522
consensus_9733#2 ATTGTGCCGCNATTGGGCCGGGGTCCTGGCCGAAACTTTTTTGGCCCCCTGTGGCTGTGG 650
consensus_9733#1 GGGGTACCATTTTTAATTCCCAGTGAGGNACAGCNCACAATGGGATGGCTCANACGGCGC 719
** * * * *
consensus_9733#0 ATTCAC-GTGCAATACACGACCACAGTGTGTAACGGGATGCAAAATCGACGAAAATGAGC 842
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 -CCCCC-TNGTGGTGCCCGGA-AAACCGAAAAGGGGTATCCNGAACAAGGGCAAAT---- 703
consensus_9733#1 TCACACGNTCTTGGGCAACACCAAACTGGGTGGGGGCGNAGAAANGCCCCTAACANGGGN 779
consensus_9733#0 CTCACAACACAATCAATTCGAGCAATACAACCGCTTTTTGTCTTCTGTCTATTGTTGAAC 902
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------------
consensus_9733#1 ATANACCACCCCTGGGGAAAAGACACNGAGTGAAACGTTTTGGCGTTTATAAAGCACCTT 839
consensus_9733#0 GTAGAGTTTAAAATAAATTAAAGCCAGTTTTGATAGAAATGTATCAATGATGATGTAAAA 962
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------------
consensus_9733#1 TTGGGGCGCANGACTTTATTCCGTGGGCGCAAGAAGTTATTACCCGTGTTTAACCCCACA 899
consensus_9733#0 AAAAAAAAAAAAAAAAAAGGCCACATGTGCGCGAG------------------------- 997
consensus_9733#3 ------------------------------------------------------------
consensus_9733#2 ------------------------------------------------------------
consensus_9733#1 AATTTTCTTTAGGGCGCACGCCGTAATCGAGCCTGCGGTTCAAACTTCTATAAAACACCT 959
consensus_9733#0 ---------------
consensus_9733#3 ---------------
consensus_9733#2 ---------------
consensus_9733#1 GACGGCTGGGGCACT 974
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||