|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1160 fasta sequence
[CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT--AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG-ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT-GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG-T--A-ATGCGCGCGCGCG-CGCG--CTTG-TGTGTGAGTGTATG-TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC---AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG-GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG-TTTT----TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT-AAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC]
[+] EMBL BM643615 [CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGACGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGg ]
[+] EMBL CNS08EP1 [ ataTCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGATAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGC CCCT CTTGTTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAATTTTGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACA ]
[+] EMBL AGA281385 [ TTTTCTTTTCTTTCTACACTTCGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGG ]
[-] EMBL CNS08EP2 [ TCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAAAAAACACTCAACACAATGCAAAAAATCTTCCGCAATGCCATCCTGGACAAACGCATAACCCGCAAGACGTTCTCCTTTTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAAGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG TA A ATG GGGCGCGCG CGTG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAG ]
[+] EMBL CNS09OZ8 [ AACATACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGCGCCCCT TTTGTTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT AAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC]
[+] EMBL CNS09QSM [ gaaAAAAAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGACATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGA CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCAGAAC GTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATGCGCGCGCGCG CCCT TTTGCTGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAATAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCCCATGTG ]
[-] EMBL CNS09OZ9 [ AAACAAACAAAACAAAGCTTTCTACAGTGAAAAATAGAAGCGACGTAAGAGATAAAAAAAACTCAACACAATGCTCCGTTTCTTCCGGAATGCCATCCTGGACAAACGCATTACCCGCAAGACGTTCTCCTTTTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCCAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGGACTGCTGGAACCGTCGGAGGAGAATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGGGCTGGTGCAGACGTTCGAGGTGAAAGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGTGGGTGGACAAATTCATCGGCCTGGTGGACGCGGACATGATCGAGAATCTTATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTT A ATG G GCGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGGACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTAACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTTATTTACGATCGGAAAATATACGGGAAAGCGAAAACAAAAAT AAAAAAAAag ]
[-] EMBL CNS094LM [ AGCGACGTAAGAGATAAAACACA CAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAA GCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCAAACAAACGGTCCCTGGGGTGTGTGTTTG TTAA ATGGGCGCGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAA AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTTTTTGTTTTTCTGTAAGAGTCCACACACCA GGGTGAAGCGA TTTATC TTTAA TTAC ATCGGA ]
[+] EMBL BX608926 [ ACACAATGCTCCGTATCTTCCGCAATGCCATACTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCCAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAG ATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTG T ATAAGCGCGCGCGCG CGCGCCCTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGA ]
[-] EMBL CNS08V98 [ GAACCGTCGGAGGAGAATCG TCTGGCGATCGTCGATGTGGATGACAATGCGGGGCTGGTGCAGACGTTCGAGGTGAA GCGGTCCCCGCCATCCTTGCCTTCCGGAACGGTGTGGT GGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTTATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGAACACAAACGGTCCCTGGGGTGTGTGTTTG TA A ATG GGGCGCG CGCG CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGAACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAG CGTGAACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGG ]
[-] EMBL CNS09QSN [ GCG CTTG TGTGTGAGTGTATGTTATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAG CGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGTTTTTTTTTTTTTATTTACGATC ]
[-] EMBL AGA283000 [ c CTTG TGTGTGAGTGTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGACATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGA ]
[+] EMBL BM581530 [ GTATG TATGGTGGAACCGGATGCACGTGCATGGAATTTTAGCGC AAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAG GAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGACATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTT TTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTT ]
[-] EMBL CNS08IGY [ ATTTTAGCGCAATAAAAAACGAGGAGCCGGAGATGAGCCGTGCACGGGCACGGATTTCGTTAGATATACCAAGTAAGCATAGTGAACGACTACCCCCTAGAACGGCAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTGGTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCATTGTGTGATTGTACAGTGATCGATTTTATTGTTTTG TTTTTTTGTTTTTCTGTAAGAGTCCACACACCAGGGGTGAAGCGATTTTATCTTTTAAATTACGATCGG ]
consensusID : consensus_9735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence
[CGCGAAAAAGATGGTCGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATT-GTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT--AAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTATGCGCGCGCGCCCCTATGCTGTGTGAGTGTATGTATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCACGGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG]
[+] EMBL CNS09ENV [CGCGAAAAAGATGGTCGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATT GTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGAT AAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAACGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATTGGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGGTGTGTGTTTGTATGCGCGCGCGCCCCTATGCTGTGTGAGTGTATGTATGGTGGATCCGGATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCACGGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG]
[+] EMBL CNS08IGX [ GATAAGCGTTTTATTTCGATTAGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAAAAGCGACGTAAGAAATAACACACA ]
[+] EMBL CNS094LL [ TACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAAGTGT ]
consensusID : consensus_9735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence
[ACCCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCTTCGGCAGTGTTAGCCAGTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACATGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCACCGGGACCGAGTTCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGTTACGGTGGAGGTAGTGGTGTGTGGCGTGCGCCGGCGGCTATGGAGGTGGCGTAGTCGCTTCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC]
[+] EMBL CNS08FJJ [ACCCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCTTCGGCAGTGTTAGCCAGTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACATGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCACCGGGACCGAGTTCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGTTACGGTGGAGGTAGTGGTGTGTGGCGTGCGCCGGCGGCTATGGAGGTGGCGTAGTCGCTTCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC]
consensusID : consensus_9735#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAGACATTGGTCCGACACACTTTTCTATTCCCAGTTGTTCGAATTAGCACAAGGAACAAGGGAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAAGCCATACACAAGAAAAGCGGAAGCGGCACAAAATGTCCGACGATTACGACAGTACGACTTCGAGATGGAGAAGCACATCACCTCGGGGGCACAGGGCAGCAGCGGCAGCCAGAAGGAGGGC]
[+] EMBL AL931106 [GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAGACATTGGTCCGACACACTTTTCTATTCCCAGTTGTTCGAATTAGCACAAGGAACAAGGGAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGCGCTACAAACTACAAAAGCCATACACAAGAAAAGCGGAAGCGGCACAAAATGTCCGACGATTACGACAGTACGACTTCGAGATGGAGAAGCACATCACCTCGGGGGCACAGGGCAGCAGCGGCAGCCAGAAGGAGGGC]
consensusID : consensus_9735#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence
[GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGCGTACGCAACACGCGGACCGTTACGATCCTGGTCACGGCACCAGTTAAAAACTAAAAAAAAAACAGGGGTGATTTAACAAACGGGGGCACAACCACGGCCAAGCAGGGGGCACGGTGGAGCGCCGACGGGTATAGGGTCGGTGGTCGATGATAACGCTGA]
[+] EMBL BX614774 [GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGCGTACGCAACACGCGGACCGTTACGATCCTGGTCACGGCACCAGTTAAAAACTAAAAAAAAAACAGGGGTGATTTAACAAACGGGGGCACAACCACGGCCAAGCAGGGGGCACGGTGGAGCGCCGACGGGTATAGGGTCGGTGGTCGATGATAACGCTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9735#0 --------------CCGCCCACGCGTCCGCGTCTTTTCCTCGTTATCTGTGTTTAGTTTT 46
consensus_9735#1 CGCGAAAAAGATGGTCGCCAATA--TCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTT 58
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 CTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTG 106
consensus_9735#1 CTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTG 118
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGG 166
consensus_9735#1 TTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGG 178
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 ATAAAAAAAAACAAACAAACAAAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAA 226
consensus_9735#1 ATAAAAAAAA-CAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAA 237
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ----------------------------------------------------------AC 2
consensus_9735#0 GAGATAACACACACTCAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAA-AC 285
consensus_9735#1 GAGATAACACACA--CAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAA-AC 294
consensus_9735#3 --------------GCCAAGAATCCCCCCGAGGTTTTAACAGTGCCGGACGTATCATTAG 46
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 CCGACGTCAGTCCTACTGCGACCGTTCCCGGACTCTTCTTCCT-TCGGCAGTGTTAGCCA 61
consensus_9735#0 GCATCA-CCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAG 344
consensus_9735#1 GCATCA-CCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAG 353
consensus_9735#3 ACATTGGTCCGACACACTTTTCTATTCCCAGTTGTT-CGAATTAGCACAAGGA-ACAAGG 104
consensus_9735#4 ----------------------------GTGTACGTGTGTGTCGGTGTGTTTAGGTGCGC 32
consensus_9735#2 GTACCAGTCGATTTTATTCGACTCCCATCAGCAAGGAAGGTTTCGAGGACGATTTAGACA 121
* * * *
consensus_9735#0 GATCACTACGAGTTCGACCAGAAGGTGA---TAAACAGCGACAAC--CCGGTGATCGTCA 399
consensus_9735#1 GATCACTACGAGTTCGACCAGAAGGTGA---TAAACAGCGACAAC--CCGGTGATCGTCA 408
consensus_9735#3 GAACCCAACTTTNGCAACAGGGAGTTAAACCCAGGAAACGGAAGC--GCTACAAACTACA 162
consensus_9735#4 GTACGCAACACGCGGACCGTTACGATC----CTGGTCACGGCACCA-GTTAAAAACTAAA 87
consensus_9735#2 TGGCTCCGAGATTCGAGCGAGAAGACTACAAGAAGGAACCGTACCACGGTGTGAAGCGCA 181
* * * * * * * * *
consensus_9735#0 ACTTCCACGCC---GAATGGTGTGACCCGTGCAA--AATACTTACCCCGAAGATGACGGA 454
consensus_9735#1 ACTTCCACGCC---GAATGGTGTGACCCGTGCAA--AATACTTACCCCGAAGATGACGGA 463
consensus_9735#3 AAAGCCATACACAAGAAAAGCGGAAGCGGCACAA--AATGTCCGAC--GATTACGACAGT 218
consensus_9735#4 AAAAAAACAGGGGTGATTTAACAAACGGGGGCAC--AACCACGGCC---AAGCAGGGGGC 142
consensus_9735#2 CCGGGACCGAGT-TCAAGCGCGGAACTGGAACGACCGGTTCGCGCCCCGGTGGTGGTGGT 240
* * * * * * *
consensus_9735#0 -ACTGCTG-GA-ACCGTCGGAGGAGATCGATCTGGCGATC--GTCGATGTGGATGACAAT 509
consensus_9735#1 -ACTGCTG-GA-ACCGTCGGAGGAGATCGATCTGGCGATC--GTCGATGTGGATGACAAT 518
consensus_9735#3 -ACGACTTCGA-GATGGAGAAGCACATCACCTCGGGGGCA--CAGGGCAGCAGCGGCAGC 274
consensus_9735#4 -ACGGT---GG-AGCGCCGACGGGTATAGGGTCGGTGGTC--GATGATAACGCTGA---- 191
consensus_9735#2 TACGGTGGAGGTAGTGGTGTGTGGCGT-GCGCCGGCGGCTATGGAGGTGGCGTAGTCGCT 299
** * * * * ** * * *
consensus_9735#0 GCGGAGCTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC 569
consensus_9735#1 GCGGA-CTGGTGCAGACGTTCGAGGTGAAGGCGGTCCCCGCCATCCTTGCCTTCCGGAAC 577
consensus_9735#3 -CAGAAGGAGGGC----------------------------------------------- 286
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 TCTTCACGATGGCCGAGCGCAACAGTGCGCGCGAGCTGGTCAACATC------------- 346
consensus_9735#0 GGTGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATT 629
consensus_9735#1 G-TGTGGTGGTGGACAAATTCATCGGCCTGGTGGACGCGAACATGATCGAGAATCTGATT 636
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 GGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGG 689
consensus_9735#1 GGCAAGCTGACGAAGAAAAAGGCCACCTAAGGACCGGCTGCACACAAACGGTCCCTGGGG 696
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGTGTGTTTGTAATGCGCGCGCGCGCGCGCTTGTGTGTGAGTGTATGTATGGTGGAACCG 749
consensus_9735#1 TGTGTGTTTGTA-TGCGCGCGCGCCC-CTATGCTGTGTGAGTGTATGTATGGTGGATCCG 754
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 GATGCACGTGCATGGAATTTTAGCGCAAAAAACGAGGA--GCCGGAGATGAGCCGTGCAC 807
consensus_9735#1 GATGCACGTGCATGGAATTTTAGCGCAAAAAAAAAAAAAAGACGGAGATGAGCCGTGCAC 814
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 GGGCACGGATTT-CGTTAGATATACCAAGTAAGCATAGGAACGACTACCCCCTAGAACGG 866
consensus_9735#1 GGGCACGGATTTTCGTTAGATATACCAAGTAAGCATAGGAACG----------------- 857
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 CAGAAATGAGAAAAGTGACAAAAAAGCAATTGTGTGCATTCAAAAGGTTCACATGTGGTG 926
consensus_9735#1 ------------------------------------------------------------
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 GTGTGCGAAACATCGCGACCTTCGTGCCACCCCTTCCTCTTATACTACTACGATAGGCAT 986
consensus_9735#1 ------------------------------------------------------------
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 TGTGTGATTGTACAGTGATCGATTTTATTGTTTTGTTTTTTTTTCTGTAAGAGTCCACAC 1046
consensus_9735#1 ------------------------------------------------------------
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 ACCAGGGGTGAAGCGATTTTATCTTTTAATTTACGATCGGAAAATATACGGGAAAGCGAA 1106
consensus_9735#1 ------------------------------------------------------------
consensus_9735#3 ------------------------------------------------------------
consensus_9735#4 ------------------------------------------------------------
consensus_9735#2 ------------------------------------------------------------
consensus_9735#0 AACAAAAATAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCC 1160
consensus_9735#1 ------------------------------------------------------
consensus_9735#3 ------------------------------------------------------
consensus_9735#4 ------------------------------------------------------
consensus_9735#2 ------------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||