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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9752#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 891 fasta sequence
[ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGGAAAATTGCTAG-TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC-GTGATAATCAAGCAAAAC-GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG-ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA-GGACTTTCT-GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA-GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGAAAAAAAAAAAAAAAAAAAAGGC]
[+] EMBL CNS09GXA [ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGTATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGGACTTTCTGGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACGACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTTCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGAAAAAAAAAAAAAAAAAAAAGGC]
[+] EMBL CNS093LW [ CGCAGTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGCCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAAAGTAAAACAAAA AAAAAAA ]
[+] EMBL BM615132 [ ccgCGCAGTCCGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATC ]
[-] EMBL CNS09GXB [ aTCTGCCGCGACGGGGAAAATTGCTAG TTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCAAAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAAAACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTAAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTATGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACGACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAAAAAAACGGTGAAAAAAAAA ]
[+] EMBL CNS09AQR [ AATTGCTAGATTTTCTACAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCCTGTGATAATCAAGCAAAACGGGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTTAAACAAAAaaa ]
[+] EMBL BX628045 [ G TTTTCTACNAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGTATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATNCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGG ]
[+] EMBL BM592220 [ ccgGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTAAACTAATTTATCTGCATG ]
[+] EMBL BM595325 [ ccgAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGCTGCAGGACTTGAATCGCATACGTTGTATTTTCATTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCT ]
[+] EMBL BX622784 [ TTCCAGCTGTTTGTACCGATTGTTTCCAT AAAAAGCTGTTATCC GTGATAATCAAGCAAAAC GGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGTATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCCAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATANGGAACCATTCCTTGTCT ]
[+] EMBL BX625505 [ CGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACG ]
[+] EMBL BX618359 [ CGTTGTATTTTCGTTGAATAAAAGAATAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATT ]
[-] EMBL CNS093LX [ ctTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGG ATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAA GGACTTTCT GCTGATCGTCATCCAAAACCCCACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAA ]
[-] EMBL CNS09AQS [ CCGACGGATTGAGGTATTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTCCCTTTTTTTGTTCTATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATA GGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCA ]
consensusID : consensus_9752#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence
[GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTACAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNTATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGCATTAACTGTTTANCATGTAGGCAACANAGGATGNCATAGTTACCAGGAACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCCCATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCCNATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG]
[+] EMBL BX467537 [GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTACAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNTATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGCATTAACTGTTTANCATGTAGGCAACANAGGATGNCATAGTTACCAGGAACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCCCATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCCNATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG]
[+] EMBL AGA282000 [ AATTGCTAGTTTTCTACACCAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGA ]
[+] EMBL AGA285569 [ AGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAA AAAGCA ]
consensusID : consensus_9752#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 606 fasta sequence
[CGAGCAGATCGCCCACGGCTTAATCGCGCGACGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGAATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCGGTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTACCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAAAAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAGGCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTANACGTGCACGTGTAT]
[+] EMBL AL695682 [CGAGCAGATCGCCCACGGCTTAATCGCGCGACGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGAATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCGGTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTACCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAAAAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAGGCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTANACGTGCACGTGTAT]
consensusID : consensus_9752#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 601 fasta sequence
[GACCCACGCGTCCGCGGACGCGTGGGCGACGGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA]
[+] EMBL BM578694 [GACCCACGCGTCCGCGGACGCGTGGGCGACGGGGAAAATTGCTAGTTTTCTACAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAAGCTGTTATCCGTGATAATCAAGCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTTTCGTTGAATAAAAGAAGAAAATGTCGCAAGAAGTGGAGGAAACCCTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCAGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTACTCGTGCGTGCGCGCGGTGGTGATGCTGCTACAGCGAGGCA ]
[-] EMBL AGA284269 [ ACCTTAAAGCGCATCCAATCGCACAAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTCGACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTGTCCGACAAGGCCCGGTCGGTGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTCTACGGGTGCGGTCCAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGTTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA]
consensusID : consensus_9752#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 441 fasta sequence
[GATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATAGGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAACCAAAAAAAA]
[-] EMBL AGA280303 [GATAAGGACTTTCTGCTGATCGTCATCCAAAACCCGACGGACTGAGGTATTCGTGCGTGGGCGCGGTGGTGATGCTGCTACAGCGAGGCAGCTGGCTTGTGTGGCGTATATTTTTCCTTCTTTTGTTATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTGGTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTGATATGTAATTGTTCCATAGGAACCATTCCTTGTCTAAACTAATTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAACACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAACCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9752#1 ---GCAGAATCGGCACGTAGGCGCAGTCCGCCGCGACGGGGCNAAATTGCTAGTTTTCTA 57
consensus_9752#2 CGAGCAGATCGCCCAC---GGCTTAATC--GCGCGACGGG--AAAATTGCTAGTTTTCTA 53
consensus_9752#3 -------GACCCACGCGTCCGCGGACGCGTGGGCGACGGGG-AAAATTGCTAGTTTTCTA 52
consensus_9752#0 -ACTGGAAAAACATAACGAATCGCAGTCTGCCGCGACGGGG-AAAATTGCTAGTTTTCTA 58
consensus_9752#4 ----------------------------------GATAAGGACTTTCTGCTGATCGTCAT 26
** * **** * **
consensus_9752#1 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 116
consensus_9752#2 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 112
consensus_9752#3 CAAAAGAAAAGTTTTTCCAGCTGTTTGTACCGATTGTTTCCATAAAAA-GCTGTTATCCG 111
consensus_9752#0 CAAAAGAAAAGTTTTTCCAGCCGTTTGTACCGATTGTTTCCATAAAAAAGCTGTTATCCG 118
consensus_9752#4 CCAAAACCCGACGGACTGAGGTATTCGTGC--GTGGGCGCGGTGGTGATGCTGCTAC--- 81
* *** ** ** ** * * * * * * **** **
consensus_9752#1 TGATAATCAA-GCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTT-TCGTTGA 174
consensus_9752#2 TGATAATCAACGCAAAACGGGTTGCAGGACTTGAAGCGCATACGTTGTATTTCTCGTTGA 172
consensus_9752#3 TGATAATCAA-GCAAAACGGATTGCTGGACTTGAAGCGCATACATTGTATTT-TCGTTGA 169
consensus_9752#0 TGATAATCAA-GCAAAACGGGCTGCAGGACTTGAATCGCATACGTTGTATTT-TCGTTGA 176
consensus_9752#4 ---------A-GCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTTCCTTC-TTTTGTT 127
* ** * * * ** * ** ** *** ** ** * *
consensus_9752#1 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 232
consensus_9752#2 ATAAAAGAACGAAAATGTCGCAAGAAGTGGACGGAAACCCTAAAGCGCATCCAATCGCAC 232
consensus_9752#3 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 227
consensus_9752#0 ATAAAAGAA-GAAAATGTCGCAAGAAGTGGA-GGAAACCCTAAAGCGCATCCAATCGCAC 234
consensus_9752#4 ATATTTTATCGTGCGTGTTGGCAACAACGCTTCAAATGGCTTGTCTGAGTGTATGTGCGT 187
*** * * *** * * * * ** ** * * * **
consensus_9752#1 AAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTC 292
consensus_9752#2 AAAGGCGTCGTAGGAACGATTGTGGTCAATAATGAAGGAATTCCAGTGAAAAGTACCCTC 292
consensus_9752#3 AAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTAAAAAGTACCCTC 287
consensus_9752#0 AAAGGCGTCGTAGGAACGATTGTGGTCAACAATGAAGGAATTCCAGTGAAAAGTACCCTC 294
consensus_9752#4 CCTGGTCC---GGGGACGATTTAATTTA--AATGTAGCAAAAGATGCATAATACAGACTC 242
** ** ****** * * **** ** ** * ** * ***
consensus_9752#1 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCCGACAAGGCCCG 351
consensus_9752#2 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCTAGTCCGACAAGGCCCG 352
consensus_9752#3 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCAGACAAGGCCCG 346
consensus_9752#0 GACAACACGTCCACCGTGCAGTACGCTGGGTTGATGAGCCAGCT-GTCCGACAAGGCCCG 353
consensus_9752#4 AATGAATTGAT----ATGTAAT-TGTTCCATAG--GAACCATTC--CTTGTCTAAACTAA 293
* * * ** * * * * * * ** *** * * * *
consensus_9752#1 GTCGG-TGGTCCGTGATCTGGATTCATCGAACGATCTCTCCTTT-CTACGGGTGCGGTCC 409
consensus_9752#2 GTCGGATGGTCCGTGATCTGGATCCATCGAACGATCTCTCCTTTTCTACGGGTGCGGTAC 412
consensus_9752#3 GTCGG-TGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTT-CTACGGGTGCGGT-C 403
consensus_9752#0 GTCGG-TGGTCCGTGATCTGGATCCGTCGAACGATCTCTCCTTT-CTACGGGTGCGGT-C 410
consensus_9752#4 TTTATCTGCATGTTGCTTCACAACTACGTGATAAAGTACATACAACAACACACTAGGCAC 353
* ** ** * * * * * * ** ** *
consensus_9752#1 AAGAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 467
consensus_9752#2 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTTACTGCTGATCCGTCATCCAA 472
consensus_9752#3 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 461
consensus_9752#0 CAAAAAGCACGAAATCATGGTCGCTCCCGATAAGGACTTT-CTGCTGATC-GTCATCCAA 468
consensus_9752#4 AACACAAGGTATGAAGATGGTT--TTCTTAACACATTTTTATTATTCATAGATCATCTAT 411
* * * * ***** * * * * *** * * ** ***** *
consensus_9752#1 AA--CCCGACGGACTGAGG-TATTCGTGCGTGGGCGCAGGTGGTNGATGCTGCTA----- 519
consensus_9752#2 AAAACCCGACGGACTGAGGGTATTCGTGCGTGGCGCCGCGGTGGTGATGCTGCTAACCAG 532
consensus_9752#3 AA--CCCGACGGACTGAGG-TACTCGTGCGTG--CGCGCGGTGGTGATGCTGCTA----- 511
consensus_9752#0 AA--CCCGACGGACTGAGG-TACTCGTGCGTG--CGCGCGGTGGTGATGCTGCTA----- 518
consensus_9752#4 AAAAGAAAACAAAACGTAA--ACCAAAAAAAA---------------------------- 441
** ** * * *
consensus_9752#1 -CAGCGAGGCAGCTGGCTTGTAGTGGCGTATATTTNNNACCTTCTTAAAGTCATATCGNT 578
consensus_9752#2 GCGGAGGCACGCCTGGGCTATGCTGTGGCGTATATTTTACCTTACTTAAAGTATATTTAN 592
consensus_9752#3 -CAGCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTTCCTTCTTTT-GTTATATTTTA 566
consensus_9752#0 -CAGCGAGGCAGCTGGCTTG---TGTGGCGTATATTTTCCCTTTTTTT-GTTCTATTTTA 573
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 ATCAGTGCGTGTTGGCAACAACGGCTTTCAAATGGCTTGTCTGAGTGTATGTGCGTCCTG 638
consensus_9752#2 ACGTGCACGTGTAT---------------------------------------------- 606
consensus_9752#3 TC--GTGCGTGTTGGCAACAACGCCCGGNAAAAAAAA----------------------- 601
consensus_9752#0 TC--GTGCGTGTTGGCAACAACG--CTTCAAATGGCTTGTATGAGTGTATGTGCGTCCTG 629
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 GTCCGGGGACGCATTAACTGTT------TANCATGTAGGCAACANAGGATGNCATAGTTA 692
consensus_9752#2 ------------------------------------------------------------
consensus_9752#3 ------------------------------------------------------------
consensus_9752#0 GTCCGGGGACGATTTAATTTAAATGTAGCAAAAGATGCATAATACAGACTCAATGAATTG 689
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 CCAGG-AACTCTCCCAACATGACAACTTTCCGACTCACTGGTTCACACTTCAGGGTTCCC 751
consensus_9752#2 ------------------------------------------------------------
consensus_9752#3 ------------------------------------------------------------
consensus_9752#0 ATATGTAATTGTTCCATAGGAACCATTCCTTGTCTTAACTAATTTATCTGCATGTTGCTT 749
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 CATTAAGGGAAACCCAAATTTACCCATTGGGTCCTAAAACCTACACTTTTCATTCTGGCC 811
consensus_9752#2 ------------------------------------------------------------
consensus_9752#3 ------------------------------------------------------------
consensus_9752#0 CACAACTACGTGATAAAGTACACTAGGCACAACACAAGGTATGAAGATGGTTTTCTTAAC 809
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 NATGNGTTTNNGGATTTCCAACAAACTTTACGTTNGATACAAAGTTACCATTACCTAG-- 869
consensus_9752#2 ------------------------------------------------------------
consensus_9752#3 ------------------------------------------------------------
consensus_9752#0 ACATTTTTATTATTCATAGATCATCTATAAAAGAAAACAAAACGTAAAACAAAACGGTGA 869
consensus_9752#4 ------------------------------------------------------------
consensus_9752#1 ----------------------
consensus_9752#2 ----------------------
consensus_9752#3 ----------------------
consensus_9752#0 AAAAAAAAAAAAAAAAAAAGGC 891
consensus_9752#4 ----------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||