These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 679 fasta sequence [CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAGCTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGTCACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGGCGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGACTCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGCAGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCT] [+] EMBL BI512486 [CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAGCTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGTCACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGGCGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGG ] [+] EMBL BI502784 [ GAGAACGAGGAGGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAACAGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCACAACCGCCGTCGAGCGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAGCGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGACTCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGCAGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCT] consensusID : consensus_1091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 534 fasta sequence [GAATCGGTGTCGATAAGCCTCAATTCGTACAATGAGTCCGACATTGAGTTAAAGGAGAGGTTAGCCGAGTCTCTGGCGGAGACCGAGAAGCAGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCGTCGACCACTGTCCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGATGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATAAGCGATAAGGCTGTTGCGGCGGCAACCATCGAGTGTAATACGAATGAAATTATCGCGGAAGCACGTTACCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGAAAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTATATTATATA] [+] EMBL BI510814 [GAATCGGTGTCGATAAGCCTCAATTCGTACAATGAGTCCGACATTGAGTTAAAGGAGAGGTTAGCCGAGTCTCTGGCGGAGACCGAGAAGCAGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCGTCGACCACTGTCCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGTGAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGATGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATAAGCGATAAGGCTGTTGCGGCGGCAACCATCGAGTGTAATACGAATGAAATTATCGCGGAAGCACGTTACCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGAAAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTATATTATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1091#0 CAATAAGGAAACGAAGAAGAAGGAAAAGATGAAGAAAAAGTGGTCCTTCAGGTCGATCAG 60 consensus_1091#1 ----------------------GAATCGGTGTCGATAAGCC--TCAATTCGTACAATGAG 36 *** * ** ** ** ** * * * ** ** consensus_1091#0 CTTCAGCAAGAAGGATAAGAACAAGCCTGCCCGCGAAGAAGCGCCCAAGAATGGAGACGT 120 consensus_1091#1 -TCCGACATTGAGTTAAAGGAGAGGTTAGCC----GAGTCTCTGGCGGAGACCGAGAAGC 91 * * ** ** *** * * * *** ** * * * **** * consensus_1091#0 CACCAAGGAGGAACCTCTCGCGGAGGGCGGCGAGGAGCAGGAGAACGGATCGGGCACGG- 179 consensus_1091#1 AGGAAGAGAGCTTGGTCTCGTGTCAGTTGTTGAACAACGCAACGTCG--TCGACCACTGT 149 * *** ***** * * * ** * * * ** *** *** * consensus_1091#0 -CGGGTAGCCCCGTGGAGGAGAAATCAGCGGTGAGCAGTCCGACGACGGAGAACGAGG-A 237 consensus_1091#1 CCAGGAGACCCATCAGAGCACCCCGGAACAGCCAGAGGCCC--CGGTAGAAAATAACGTG 207 * ** *** *** * * * * ** * ** ** ** ** * * consensus_1091#0 GGCGACGGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCAGCGGCAAC 297 consensus_1091#1 GGCCACGACGTGAGCA----CGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCC 263 *** *** ** ** ** *** * * * * * * * ** * * * consensus_1091#0 AGCGGCAACAACGGCAGCGGCAACACCGTCATCACCGTCCTCGCCA-CAACCGCCGTCGA 356 consensus_1091#1 AGCCGTCCCAAGCGAAGTGATAACCGCCTCTCCGCCATCTGCACCGGCCATCACCGAGGA 323 *** * *** * ** * *** * ** * ** ** * ** * * * *** ** consensus_1091#0 G--CGCCGCGGAGACGAAGCAGCAGGAGGAGAGCAGCGGAGCGGCGTCGGCGGCGGCCAG 414 consensus_1091#1 TGTTGCCTCGGTAGCCAAGGCTATCGAAGAAATTGACATA--AGCGATAA-GGCTGTT-G 379 *** *** * *** ** ** * * * *** *** * * consensus_1091#0 CGGAGCCAGCCCGTTGGAGGAAAAGACGGAGGAGGCCGCCGATCCCTCCACCGCCCCGAC 474 consensus_1091#1 CGGCGGCAACCA--TCGAGTGTAATACGAATGAAATTATCG------CGGAAGCACGTTA 431 *** * ** ** * *** ** *** * ** ** * ** * consensus_1091#0 TCCCGCCCCCTTGGAGGAAAAGAAAGAGGAGGTGGAAAAACTCGAGGCCGAGAAAAAAGC 534 consensus_1091#1 CCAAAACAACATAAACGAATAAATCGAAACGCTAATCGAATTGTATTTTTGGGAAGAAGA 491 * * * * * *** * * ** * * ** * * * ** *** consensus_1091#0 AGTCGAGAGCACCCCGGAACAGCCAGAGGCCCCGGTAGAAAATAACGTGGGCCACGACGT 594 consensus_1091#1 AAGTTCTTTTCTCTCGTTAAAACCAAAAAAAGTA-TATTATATA---------------- 534 * * ** * * *** * ** * *** consensus_1091#0 GAGCACGACGGAGAGTTCAACCGAGCCTGTCAAGGTTACATCCCCAGCCGTCCCAAGCGA 654 consensus_1091#1 ------------------------------------------------------------ consensus_1091#0 AGTGATAACCGCCTCTCCGCCATCT 679 consensus_1091#1 ------------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |