These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1133#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAAGATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCACAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATCACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATATGAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATTATATGTAGATCAGTCAATAAGTGCTAA] [+] EMBL BI516641 [CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAAGATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCACAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATCACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATATGAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATTATATGTAGATCAGTCAATAAGTGCTAA] consensusID : consensus_1133#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 422 fasta sequence [CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTTTGGGTTTAATCTTA] [+] EMBL BI516646 [CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTTTGGGTTTAATCTTA] [+] EMBL BI513037 [ GCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGACATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAACGAATTTCCTCCTTTGAAAAATGCAACTCACGACGTGTTGCAAATGTTATTCGTTAAAAACGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCAATTATCTCATTGATCTTAATCTTTACTTTAAATGTCGAATGGAAAACAATATTGATCGACATTGTAGACCAAAGCATCGTCAGGATCATTTTTGCGATAAATTTATGCATGACGATTCTGATTTCAACATTGCTTATAGTTGGCGCTCTTAAGAAAAAAACATTTTTAATGCTACCATGGGTAGTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1133#0 ----------CCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGA 50 consensus_1133#1 CCTCGCGCCACCCAAATTTCTGCGAGGAAACCCTCCGAAATCTCTCTTCCGGTTGTCTGA 60 ************************************************** consensus_1133#0 CATTTGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAA 110 consensus_1133#1 CATTGGGAAAACCGCGCACCCCATTGCCTAGAGGCGACATCTTCGATCTTTCGAAGCCAA 120 **** ******************************************************* consensus_1133#0 CGAATTTCCTCCTTTGAAATGAACGCGGAAATCGGTTACGAAAGAAGCGACACGCGACAA 170 consensus_1133#1 CGAATTTCCTCCTTTGAAA--AATGCAACTCACGAC-GTGTTGCAAATGTTATTCGTTAA 177 ******************* ** ** ** * ** * * ** ** consensus_1133#0 GATATCGGTATTCCAAGACGCTGCGACGCTGCACCTGTCTTGATCGTGACGAATGCTGCA 230 consensus_1133#1 AAA--CGGGGACATTGTTCACTGGAATATTGGGCATAGTTTTATCA-----ATTATCTCA 230 * *** * *** * ** * * ** *** * * ** consensus_1133#0 CAAATAAAGGAATGTCGTGATAAAGATCTGAATTGGAAATTCTGATGACGACTTACTATC 290 consensus_1133#1 TTGATCTTA-ATCTTTACTTTAAATGTC-GAATGGAAAAC---AATATTGATCGACATTG 285 ** * * **** ** **** * *** ** ** ** * consensus_1133#0 ACTACGTGATCCTCTTTATTGTATGACATGTTCGATACAATAGACTTTAAACTAGTATAT 350 consensus_1133#1 TAGACCAAAGCATCGTCA--GGATCATTTTTGCGATA-AATTTATGCATGACGATTCTGA 342 ** * * ** * * * ** * * * ***** *** * ** * * * consensus_1133#0 GAAAAAACTTACATTAGAATTCATAACATACATTACATTACATTAGAATTTTTCACCATT 410 consensus_1133#1 TTTCAACATTGC-TTATAGTTGGCGCTCTTAAGAAAAAAACATT----TTTAATGCTACC 397 ** ** * *** * ** * * * * ***** *** * * consensus_1133#0 ATATGTAGATCAGTCAATAAGTGCTAA 437 consensus_1133#1 ATGGGTAGTTTTGGGTTTAA-TCTTA- 422 ** **** * * *** * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |