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Apis mellifera
cluster # 1161 cluster # 1161       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1161#0 length = 643 sequences # 2  
consensus_1161#1 length = 501 sequences # 1  

consensusID : consensus_1161#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 643
fasta sequence
                              [ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTTAATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCATATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAGTTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG]

[+] EMBL BI511379             [ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTTAATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BI509433             [                                                                                                                                         TTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCATATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAGTTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG]


>consensus_1161#0 ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTT AATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCG CGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCA CGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCA AATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACA TACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAA TAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAA TCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCA TATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA TAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAG TTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG



consensusID : consensus_1161#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 501
fasta sequence
                              [GTAAAAAAAAATTTTCATTGTTATTCAAAAGAATGGCTATTTCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTT]

[+] EMBL BI946505             [GTAAAAAAAAATTTTCATTGTTATTCAAAAGAATGGCTATTTCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAATAGATATAGGAAAATTTTGTT]


>consensus_1161#1 GTAAAAAAAAATTTTCATTGTTATTCAAAAGAATGGCTATTTCACTTTCCACAGAAGATA AATTAGAATACAATTTCTATCCTGTCGCGAGTGGACAGCTTCAATTCCGGATAAAAGCCC CAAATGATGCTCATATCGCTCTTACCACGGGCCCTCAAGAGGGAGAACCTATGTATGAAG TCTTCATTGGTGGTTGGAGCAATAGCAAATCCGTAATCCGTAAAAATAGAACAAAGCCTG ATGTTGCTGAGGTAGATACACCTGACATACTTAGTGCAGATGAAATGCGTGGATTTTGGA TAAGATGGAATGATGGTGTTCTATCAATAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCA CGTATGCCGATCCAGAACCATTTGGAATCGGTTATTTTGGAGTATGCACTGGTTGGGGTG CTTCTGGTGAATGGTTAATCGAAGATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA TAGATATAGGAAAATTTTGTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1161#0      ACATTTTATTATCTAATATTATTTAATTAAATTTTTATTAGAATTATTATAAAAATTCTT 60
consensus_1161#1      --------------------GTAAAAAAAAATTTTCATTG---TTATTCAAAAG------ 31
                                           *  **  ******* ***    *****  ***       

consensus_1161#0      AATTACCATTAAAATCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCG 120
consensus_1161#1      AATGGCTATT----TCACTTTCCACAGAAGATAAATTAGAATACAATTTCTATCCTGTCG 87
                      ***  * ***    **********************************************

consensus_1161#0      CGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCA 180
consensus_1161#1      CGAGTGGACAGCTTCAATTCCGGATAAAAGCCCCAAATGATGCTCATATCGCTCTTACCA 147
                      ************************************************************

consensus_1161#0      CGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCA 240
consensus_1161#1      CGGGCCCTCAAGAGGGAGAACCTATGTATGAAGTCTTCATTGGTGGTTGGAGCAATAGCA 207
                      ************************************************************

consensus_1161#0      AATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACA 300
consensus_1161#1      AATCCGTAATCCGTAAAAATAGAACAAAGCCTGATGTTGCTGAGGTAGATACACCTGACA 267
                      ************************************************************

consensus_1161#0      TACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAA 360
consensus_1161#1      TACTTAGTGCAGATGAAATGCGTGGATTTTGGATAAGATGGAATGATGGTGTTCTATCAA 327
                      ************************************************************

consensus_1161#0      TAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAA 420
consensus_1161#1      TAGGTAAAGAAGGTGAGCCAAGTGCATTCCTCACGTATGCCGATCCAGAACCATTTGGAA 387
                      ************************************************************

consensus_1161#0      TCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAGCCA 480
consensus_1161#1      TCGGTTATTTTGGAGTATGCACTGGTTGGGGTGCTTCTGGTGAATGGTTAATCGAAG--- 444
                      *********************************************************   

consensus_1161#0      TATGTGTAGGTGGTCACGATCGTTATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA 540
consensus_1161#1      ------------------------ATGTGAATCCAACAGCTCCACCAGTGGAAGGAGTAA 480
                                              ************************************

consensus_1161#0      TAGATATAGGAAAATTTTGTTGGTGCGAAGCATCTGGTGGAATAATTCCACCATCTGCAG 600
consensus_1161#1      TAGATATAGGAAAATTTTGTT--------------------------------------- 501
                      *********************                                       

consensus_1161#0      TTCAAGGAGGAAAAGATATTGATGGGAATGATTTGTACGTGGG 643
consensus_1161#1      -------------------------------------------
                                                                 




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)