These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACACACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTCTCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCGACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTATTATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCATTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATCGAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATATTCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTATGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGT] [+] EMBL BI507478 [ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACACACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTCTCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCGACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTATTATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCATTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATCGAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATATTCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTATGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGT] consensusID : consensus_1191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 594 fasta sequence [AGAAAAGTAAAAAAAAAAGATCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGATAGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACGAGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTTCATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTAGTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTTTCTCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA] [+] EMBL BI507213 [AGAAAAGTAAAAAAAAAAGATCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGATAGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACGAGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTTCATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTAGTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTTTCTCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA] consensusID : consensus_1191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CTAGGATAATACAGATATTTTCCAATTGACGAAACAATGCAGTATATATGCGATGATGCACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA] [+] EMBL BI509229 [CTAGGATAATACAGATATTTTCCAATTGACGAAACAATGCAGTATATATGCGATGATGCACGACACGCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGGATGTAATTGGACGATGCGACCGCGATACGCGCATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACAAGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCATGATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1191#1 ----------------------------------------AGAAAAGTAAAAAAAAAAGA 20 consensus_1191#2 ------------------------------------------------------------ consensus_1191#0 ATTTGAATTTCGCGTCCTCGATTATTTATATACATATCTACACGCATACACACACAGACA 60 consensus_1191#1 TCTCGAGTGAAATTGAAATCCTTGGTATTCCATACTTTCGATAATACCTTTTCTACAGAT 80 consensus_1191#2 ------------------------------------------------------------ consensus_1191#0 CACACACACACGTTCGTGTACTTATTATACGAGAAGGGTATTTATCCTTGTATTTTCTTC 120 consensus_1191#1 AGATAGATTGAGATTTTTATGCACGTATATATTACATTTACGCGTATTTGTTTCCCGACG 140 consensus_1191#2 ------------------------------------------------------------ consensus_1191#0 TCAAAACTTCGTCTCGTACCTCATCTCGTCTAGCGAGCCACGGATTCTCCTCTCTCGTCG 180 consensus_1191#1 AGTTGTCGAGAGAGCGAAATTTCTAATTTTTCGTATCTTTTTATTTATTCTTTCACTCTT 200 consensus_1191#2 ------------------------------------------------------------ consensus_1191#0 ACTATGTGTGTTGGAACCCGTGCCGATTATTATTATTACTATTATTACTATTATTATTAT 240 consensus_1191#1 CATCGAATATACCGAGATTCCTTTTTACGTACGTATGGTATATATAGTTGGAAGAATGTA 260 consensus_1191#2 ------------------------------------------------------------ consensus_1191#0 TATTATTATTACTACTATTATTATTATTATTTATTTGTTTCTCTAACTAAGCGCGGCCCA 300 consensus_1191#1 GTTTCTAGTACTTGAAGCTTTCCTAATTGCTTTTTCTATTTATTTATTTTTTATTAAGTT 320 consensus_1191#2 ------------------------------------------CTAGGATAATACAGATAT 18 consensus_1191#0 TTCCCCCTCCCTTTCCACTTTCTCACGATCGAATCCGACTAACCTAATTTATTCGAAATC 360 * * * consensus_1191#1 TC--TCCATTAGACACAACTACCACACACGTACACGCATACATGCGATGATACACGACAC 378 consensus_1191#2 TT--TCCAATTGACGAAACAA---------TGCA-GTATATATGCGATGATGCACGACAC 66 consensus_1191#0 GAAATTGTTTTGTCTCTATCCCCATTCTCTCCCTCCCTCTTACTTAGTTATTTAAGATAT 420 * * * * * * * * ** * ** * consensus_1191#1 GCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGG--ATGTAATTGGACGA 436 consensus_1191#2 GCGGATGAACACTGGCAACGTGCGTCGATCCACGACACGAATGG--ATGTAATTGGACGA 124 consensus_1191#0 TCGAATTTTAATAAATATTTCCCTTCGGGATAACACACGGAGGATAGTATGTTTCGAGTA 480 ** ** * * * *** * ***** * * * * ** ** * consensus_1191#1 TGCGACCGCG---ATACGCGC-ATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACA 492 consensus_1191#2 TGCGACCGCG---ATACGCGC-ATGCGCGTAAACGTATCGCCGACGTATCGTTGGCGACA 180 consensus_1191#0 TGTGCTTGAGCGCATGCGCGCCACACACACACACACACTACACAACTACCACACACGT-- 538 ** * * * ** ***** * * * * ** * * * ** * ** consensus_1191#1 AGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCAT 552 consensus_1191#2 AGGCGCGAGGAAAAGAAAAAGTTTTGTACACCGAGGCAACGATTTTGATTTTTACTTCAT 240 consensus_1191#0 ACACGCATACATGCGATGATACACGACACGCGGATG-AACACTGGCAACGTGCGTC---- 593 * *** * ** * ** * ** * *** * * * consensus_1191#1 GATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAA-------- 594 consensus_1191#2 GATTCATATTTCAATTACATACTCGTTTTTATTTATATAAAAAAAAAAAA 290 consensus_1191#0 GATCCACGACACGAATGGATGT---------------------------- 615 *** ** * * * ** |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |