These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA] [+] EMBL BI513276 [TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA] consensusID : consensus_1231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [CTTTTTTTTTCCCTCACACTCGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT] [+] EMBL BI511846 [CTTTTTTTTTCCCTCACACTCGCATGTA ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAG ] [+] EMBL BI517257 [ CGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1231#0 TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGG 60 consensus_1231#1 ------------------------------------------------------------ consensus_1231#0 CCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAAT 120 consensus_1231#1 ------------------------------CTTTTTTTTTCCCTCACACTCGCATGTAAT 30 ****************************** consensus_1231#0 ATA--ATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTT 178 consensus_1231#1 ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNT 90 *** ******************************************** ****** * consensus_1231#0 TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 238 consensus_1231#1 TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 150 ************************************************************ consensus_1231#0 TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 298 consensus_1231#1 TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 210 ************************************************************ consensus_1231#0 ATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTT-CGTTGGCGTCATC--CACCATCAT 355 consensus_1231#1 ATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGC 270 ***** * *** * *** * ** ** * * * * * consensus_1231#0 CATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCAC 415 consensus_1231#1 GACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCG--GGTCTTGCTGCT 328 * * * * * *** * * * * ** * ** consensus_1231#0 AACTTTGCATAAAC-TGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAA 474 consensus_1231#1 GGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGC 388 * ** ** * * ** * ** * * * * * * * consensus_1231#0 GCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTA 534 consensus_1231#1 CGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCC 448 * * * ** ** * * * ** ** * * * * * * consensus_1231#0 CGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCT 594 consensus_1231#1 GGCTCCCCTCGCTCACGTGTCCACCGCT-------------------------------- 476 * * *** ** * consensus_1231#0 TTTTTTAATCGAGATAAGA 613 consensus_1231#1 ------------------- |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |