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Apis mellifera
cluster # 1231 cluster # 1231       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1231#0 length = 613 sequences # 1  
consensus_1231#1 length = 476 sequences # 2  

consensusID : consensus_1231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence
                              [TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA]

[+] EMBL BI513276             [TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGGCCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTTTGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTTAATCGAGATAAGA]


>consensus_1231#0 TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGG CCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAAT ATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTG TTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTG CGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAAT TCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTTCGTTGGCGTCATCCACCATCATCATTC TCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCACAACTT TGCATAAACTGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAAGCCACT TTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTACGAGTA TATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCTTTTTTT AATCGAGATAAGA



consensusID : consensus_1231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 476
fasta sequence
                              [CTTTTTTTTTCCCTCACACTCGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT]

[+] EMBL BI511846             [CTTTTTTTTTCCCTCACACTCGCATGTA  ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAG                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI517257             [                    CGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTTTGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT]


>consensus_1231#1 CTTTTTTTTTCCCTCACACTCGCATGTAATATATAATCTTAATACCTCTCTTATCGCTCT CTGATTCTGTAATAATAATNNTCTTTGNNTTGTTCTCTGTGTACATACTCATCTCGTTGA GCTGGCTCCGCGAATGGGGGATTTATCCTGTGCGTACCTTCATCGACAAGGAAGGACATT CGATTATCAACCCGCCCATCGTTTTACGGAATTCCAGGTGGCGACCCCCACTAAAGAGCA GTGGTGCGCAGGTGGGGACAGCGCTGTAGCGACAGGCCCCGGGGCCCCAGCTCCTAAATG GCGTTCAATGCGCGCGGGTCTTGCTGCTGGCGACGCCTAGATGCGCTCCCGTAATCGACG CCACTGACGTACGATTCCTCCTCGTTGCCGTAGTCGTGTTCACCACGATCGCCCCGATCA CGATCCATCCTCTCCAGCCTCGACTTCCGGCTCCCCTCGCTCACGTGTCCACCGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1231#0      TTATGATTCTCGTGGGGGTGGGTATAGGGGCCCAGGAGGAGTCAGCGCAAAAAATTAAGG 60
consensus_1231#1      ------------------------------------------------------------
                                                                                  

consensus_1231#0      CCCCAGGGCTCTTTTTTCCTCTCATTCTTTCTTTTTTTTTCCCTCACACTCGCATGTAAT 120
consensus_1231#1      ------------------------------CTTTTTTTTTCCCTCACACTCGCATGTAAT 30
                                                    ******************************

consensus_1231#0      ATA--ATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATTTTCTTTGGTT 178
consensus_1231#1      ATATAATCTTAATACCTCTCTTATCGCTCTCTGATTCTGTAATAATAATNNTCTTTGNNT 90
                      ***  ********************************************  ******  *

consensus_1231#0      TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 238
consensus_1231#1      TGTTCTCTGTGTACATACTCATCTCGTTGAGCTGGCTCCGCGAATGGGGGATTTATCCTG 150
                      ************************************************************

consensus_1231#0      TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 298
consensus_1231#1      TGCGTACCTTCATCGACAAGGAAGGACATTCGATTATCAACCCGCCCATCGTTTTACGGA 210
                      ************************************************************

consensus_1231#0      ATTCCTGTTGGAAAAAATTTTCTCGTGAAAGTTTT-CGTTGGCGTCATC--CACCATCAT 355
consensus_1231#1      ATTCCAGGTGGCGACCCCCACTAAAGAGCAGTGGTGCGCAGGTGGGGACAGCGCTGTAGC 270
                      ***** * ***  *               ***  * **  ** *    *  * *  *   

consensus_1231#0      CATTCTCTCTCTTCCTCTCTCTCTCTCTTTCTCTCTCTTTCATGCAACAATTCAACTCAC 415
consensus_1231#1      GACAGGCCCCGGGGCCCCAGCTCCTAAATGGCGTTCAATGCGCGCG--GGTCTTGCTGCT 328
                       *    * *     * *   ***     *    *    * *  **     *    **   

consensus_1231#0      AACTTTGCATAAAC-TGATCTAGAAAGAAAATTCTGTAAAACGAGGGGGAACGGAATAAA 474
consensus_1231#1      GGCGACGCCTAGATGCGCTCCCGTAATCGACGCCACTGACGTACGATTCCTCCTCGTTGC 388
                        *   ** ** *   * **  * **   *   *  * *     *      *    *   

consensus_1231#0      GCCACTTTTACTCGATACAACGATCTCTTTCTAGAACAAGATGTATCTACGNNGTGTCTA 534
consensus_1231#1      CGTAGTCGTGTTCACCACGATCGCCCCGATCACGATCCATCCTCTCCAGCCTCGACTTCC 448
                         * *  *  **   ** *    * *  **  ** * *       *  *   *  *   

consensus_1231#0      CGAGTATATAATATACGAGTATAGAAACGATATAATTACGAAATCAATCAAGNCTTTTCT 594
consensus_1231#1      GGCTCCCCTCGCTCACGTGTCCACCGCT-------------------------------- 476
                       *      *     *** **  *                                     

consensus_1231#0      TTTTTTAATCGAGATAAGA 613
consensus_1231#1      -------------------
                                         




Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)