These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1275#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATATCATCGGCTAAATTGTAAGGCGTTTGTAATATATACGAAGCATGTATAAGCTAATGTAATTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGTGAAATTTTGTGATAGACGGTAATAACTTTTTGAAAGCTCTCTTCTTGTATTCTAGCTTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAAAAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATACTCGCGCGAGCAATGTACGAGCCGGTGATGCTTTTGGGACACACGGTAGATGCAGAGGGATATAAAAAGCAAGAAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGGACAGGCATACGGATTAAAACAAAAAAAATTGCATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGAAATAGCCACGAAAAGAATCATTTTCAACGA] [+] EMBL BI507636 [ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATATCATCGGCTAAATTGTAAGGCGTTTGTAATATATACGAAGCATGTATAAGCTAATGTAATTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGTGAAATTTTGTGATAGACGGTAATAACTTTTTGAAAGCTCTCTTCTTGTATTCTAGCTTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAAAAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATACTCGCGCGAGCAATGTACGAGCCGGTGATGCTTTTGGGACACACGGTAGATGCAGAGGGATATAAAAAGCAAGAAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGGACAGGCATACGGATTAAAACAAAAAAAATTGCATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGAAATAGCCACGAAAAGAATCATTTTCAACGA] consensusID : consensus_1275#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence [AACGAGAATTAGAAAAATTGTTTCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGAACGAACGGGTCGACGAGATACACGGCTCCACGTGAACCAAGGAGGAACGAAGAGGACGTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGCGCGCTATTCTCATTTCACAGAGATATTTCGTCATTTTCTCATCATTTCATCATCCCACGAGATACACGTAACACGTAACAATTCTCCTCGACACGGTCACACGAAGACAACCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATATTTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTACACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATT] [+] EMBL BI510324 [AACGAGAATTAGAAAAATTGTTTCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGAACGAACGGGTCGACGAGATACACGGCTCCACGTGAACCAAGGAGGAACGAAGAGGACGTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGCGCGCTATTCTCATTTCACAGAGATATTTCGTCATTTTCTCATCATTTCATCATCCCACGAGATACACGTAACACGTAACAATTCTCCTCGACACGGTCACACGAAGACAACCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATATTTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTACACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGTGCGTGTACATTGTTGCGGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1275#0 ACGCGTCGAATTGTCATGTCACCCGTGTGACTTTTATTATTCCGATATATTTAATCGCGT 60 consensus_1275#1 ------------------------------------------------------------ consensus_1275#0 GCGTGTACATTGTTGCGGATTATGAATCGTTCATTGCTGCGAAACGTGAGGGAAAGATAT 120 consensus_1275#1 ------------------------------------------AACGAGAATTAGAAAAAT 18 **** ** * * * ** consensus_1275#0 CATCGGCTAAATTGTAAGGCGTTTG--TAATATATACGAAGCATGTATAAGCTAATGTAA 178 consensus_1275#1 TGTT-------TCGCGACATCCTTGGTTCACCTGGTTGGAGTTGGCGCCCGTTCGGGTGA 71 * * * * *** * * * * ** * * * ** * consensus_1275#0 TTGTAAATTGTTTGACGTGTTGCGTTTGCTTTGAATCGCTTTGAAAAAAAGGAAAAGTGT 238 consensus_1275#1 ACG--AACGGGTCGACGAGATACACG-GCTCCACGTGAACCAAGGAGGAACGAAGAGGAC 128 * ** * * **** * * * *** * * ** *** ** consensus_1275#0 GAAATTTTGTGATAG--ACGGTAATAA--CTTTTTGAAAGCTCTCTTCTTGTATTCTAGC 294 consensus_1275#1 GTAGTAGAGTAACATCCACGGGAATGGTGCGCCCTGATATTAAGACTGATGTACAGTAGC 188 * * * ** * * **** *** * *** * * **** **** consensus_1275#0 TTCTCGTTAATTATTATCGGTTTTCACAATATGCGGTTTTATTCATTCGTTGAACGTAAA 354 consensus_1275#1 GC-------GCTATTCTCATTTCACA-GAGATATTTCGTCATTTTCTCATC-ATTTCATC 239 **** ** ** ** * ** * *** ** * * * consensus_1275#0 AAATGAAAATATAATAAAAAAAAATAATAATTGTTGTTCGATAC--TCGCGCGAG--CAA 410 consensus_1275#1 ATCCCACGAGATACACGTAACACGTAACAATT-CTCCTCGACACGGTCACACGAAGACAA 298 * * * *** ** * *** **** * **** ** ** * *** *** consensus_1275#0 TGTACGAGCCGGTGATGCTTTTGGGACACACG-GTAGATGCAGAGGGATATAAAAAGCAA 469 consensus_1275#1 CCATTGGATTCGCAGGGCTAATTGAACATATATATATAAATATATATATATCGTATATAT 358 * * *** * * *** * ** * * * **** * * consensus_1275#0 G----AAATATATTCCATATTAGCGGATAATTAGATAAGTGGGACGG-ACAGGCATACGG 524 consensus_1275#1 TTGTCAGATATATGTCATATATGTATGCGTACACTCGTTTGCCACGCCACTGGCTCTTAC 418 * ****** ***** * * ** *** ** *** consensus_1275#0 ATTAAAACAAAAAAAATTG-CATAACTTGTATATTAGTGTATAGAACGTAGAAACGATGA 583 consensus_1275#1 ACTTGCACGCGTCGAATTGTCATGTCACCCGTGTGACT-TTTATTATTCCGATATATTTA 477 * * ** ***** *** * * * * * * ** * ** * * * consensus_1275#0 AATAGCCACGAAAAGAATCATTTTCAACGA 613 consensus_1275#1 ATCGCGTGCGTGTACA-TTGTTGCGGATT- 505 * ** * * * ** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |