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These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1301#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[TACACGGGTCAAAAATGGATTAGAAAATAAATCGAGAACATTGTTCTTAGAAAAATGGTAAAAGATTGATCGAGAAAATTGGAAAGTTGAGACGTATTTGATAATTTTCGTGCAATTAAGTGAGTGAAAAAAAAAAAGAAAGAAAGAAAAATGATGGGTCGTTTGCGTAGAATTTAAGCTTGCGAGGGGACTGACGAGAAGACATATATATATATATAATATATTACATGTAAACGCGTNNNTAACGAACGATTAATTTAGCAAGATAACTGGTTAACGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGACAACGAGAAGGATAGNTCGATGGAGGTGGTTCTCNNCCGCAAAGTTCTCTCCGGTGCGACAGTGCGCACGAGGACTTTTTCTACGT]
[+] EMBL BI507431 [TACACGGGTCAAAAATGGATTAGAAAATAAATCGAGAACATTGTTCTTAGAAAAATGGTAAAAGATTGATCGAGAAAATTGGAAAGTTGAGACGTATTTGATAATTTTCGTGCAATTAAGTGAGTGAAAAAAAAAAAGAAAGAAAGAAAAATGATGGGTCGTTTGCGTAGAATTTAAGCTTGCGAGGGGACTGACGAGAAGACATATATATATATATAATATATTACATGTAAACGCGTNNNTAACGAACGATTAATTTAGCAAGATAACTGGTTAACGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGACAACGAGAAGGATAGNTCGATGGAGGTGGTTCTCNNCCGCAAAGTTCTCTCCGGTGCGACAGTGCGCACGAGGACTTTTTCTACGT]
consensusID : consensus_1301#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 406 fasta sequence
[GTTGTGCGAATGGGAAGTTTCGTATCTCGCTTCGTATCGTAGCAATTATAGATAGATTATTTAATTGCATATCTCGTGATAATTTGTTACTTAAGTAGTCCTAGTTAATTTATTGAGGAGAGTGATCGTTTTAATATTACCTCGTAATATTCGTATTTAAAAAGTGATCGTGAAAATCAATTTTTTTTTTCCAACTTAACCTTACTTCCATCCATTTGTAATCTAACCTTCAACGATAGTCGTGCGTATTAATCGAACTTCTTCCAAGCTGAAGTTCGTTCGAAGGAAAAAAACGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGACAACGAGAAGGATAGATCGATGGAGGTGGTTCTCAGCCGCAAAGTTCTCTCCG]
[+] EMBL BI512066 [GTTGTGCGAATGGGAAGTTTCGTATCTCGCTTCGTATCGTAGCAATTATAGATAGATTATTTAATTGCATATCTCGTGATAATTTGTTACTTAAGTAGTCCTAGTTAATTTATTGAGGAGAGTGATCGTTTTAATATTACCTCGTAATATTCGTATTTAAAAAGTGATCGTGAAAATCAATTTTTTTTTTCCAACTTAACCTTACTTCCATCCATTTGTAATCTAACCTTCAACGATAGTCGTGCGTATTAATCGAACTTCTTCCAAGCTGAAGTTCGTTCGAAGGAAAAAAACGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGACAACGAGAAGGATAGATCGATGGAGGTGGTTCTCAGCCGCAAAGTTCTCTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1301#0 --TACACGGGTCAAAAATGGATTAGAAAATAAATCGAGAACATTGTTCTTAGAAAAATGG 58
consensus_1301#1 GTTGTGCGAATGGGAAGT---TTCGTATCTCGCTTCGTATCGTAGCAATTATAGATAGAT 57
* ** * ** * ** * * * * * * * * *** * * *
consensus_1301#0 TAAAAGATTGA-----TCGAGAAAATTGGAAAGTTGAGACGTATTTGATAATTT--TCGT 111
consensus_1301#1 TATTTAATTGCATATCTCGTGATAATTTGTTACTTAAGTAGTCCTAGTTAATTTATTGAG 117
** **** *** ** **** * * ** ** ** * * ****** *
consensus_1301#0 GCAATTAAGTGAGTGAAAAAAAAAAAGAAAGAAAGAAA---AATGATGGGTCGTTTGCGT 168
consensus_1301#1 GAGAGTGATCGTTTTAATATTACCTCGTAATATTCGTATTTAAAAAGTGATCGTGAAAAT 177
* * * * * * ** * * * ** * * ** * * **** *
consensus_1301#0 AGAATTTAAGCTTGCGAGGGGAC-TGACGAGAAGACATATATATATATATAATATATTAC 227
consensus_1301#1 CAATTTTTTTTTTCCAACTTAACCTTACTTCCATCCATTTGTA---ATCTAACCTTCAAC 234
* *** ** * * ** * ** * *** * ** ** *** * **
consensus_1301#0 -ATGTAAACGCGTNNNTAACGAAC---------GATTAATTTAGCAAGATAACTGGTTAA 277
consensus_1301#1 GATAGTCGTGCGTATTAATCGAACTTCTTCCAAGCTGAAGTTCGTTCGA-AGGAAAAAAA 293
** **** * ***** * * ** ** * ** * **
consensus_1301#0 CGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGA 337
consensus_1301#1 CGAGAAAAGAAGAAAAGGAATTATTATCGCTTCCATTCCCTTGAATATCATTTATATCGA 353
************************************************************
consensus_1301#0 CAACGAGAAGGATAGNTCGATGGAGGTGGTTCTCNNCCGCAAAGTTCTCTCCGGTGCGAC 397
consensus_1301#1 CAACGAGAAGGATAGATCGATGGAGGTGGTTCTCAGCCGCAAAGTTCTCTCCG------- 406
*************** ****************** *****************
consensus_1301#0 AGTGCGCACGAGGACTTTTTCTACGT 423
consensus_1301#1 --------------------------
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| Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |