These datas are free for academic use only, please contact me for any other use. Apis mellifera see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1323#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence [CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGCTATTATTTACGCTTGATACATTAAGTACTATACCTAGTATTCATACAACGCTACAAAAAATCAGTACCGCAGAATCAAAAAATTCTCTTTCGACTAGCAATTCGCACGAAACTGTACCTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATATCGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTCGTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATACAACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC] [+] EMBL BI507236 [CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGCTATTATTTACGCTTGATACATTAAGTACTATACCTAGTATTCATACAACGCTACAAAAAATCAGTACCGCAGAATCAAAAAATTCTCTTTCGACTAGCAATTCGCACGAAACTGTACCTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATATCGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTCGTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATACAACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC] consensusID : consensus_1323#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATACTCCGGAAACGTCTACAGAAGATGATTATGATACTTCCAAACCACAGTCGTATAACACGGTTAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTCAATATGGTGGATAGAATAGCAGCGAATAAATATTTTCAACATGCAACCGAGTTATCCTATGTTCGAAGAGCTATGGAAGGTGTTTCGAATATGGAGATTCGATTGATGGTTACTGTTTCAAGTATTGAAGGTTGTGTATCGATAAACATTCCACCGGCACCGTCCGATCGTTTGTGGTATGGTTTTAAACCCG] [+] EMBL BI507438 [AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTTTCAGAGATAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGGCTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAATTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATACTCCGGAAACGTCTACAGAAGATGATTATGATACTTCCAAACCACAGTCGTATAACACGGTTAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTCAATATGGTGGATAGAATAGCAGCGAATAAATATTTTCAACATGCAACCGAGTTATCCTATGTTCGAAGAGCTATGGAAGGTGTTTCGAATATGGAGATTCGATTGATGGTTACTGTTTCAAGTATTGAAGGTTGTGTATCGATAAACATTCCACCGGCACCGTCCGATCGTTTGTGGTATGGTTTTAAACCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1323#0 --------------CGTTTAGTTTCTGCTGCATCTCGGTATGTTAAAAAAAAGGATTCGC 46 consensus_1323#1 AAGATTGGTATAGACGTTTAGTTTCTGCTGCATCTCGTT---TCAGAGATAACAATAGGA 57 *********************** * * * * * ** ** * consensus_1323#0 TATTATTTACGCTTGATACATTAAGTACTATACCTAGT-ATTCATACAACGCTACAAAAA 105 consensus_1323#1 CAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAAGAGGTCTGTGG 117 * * * ** *** * ** * * * * * *** * ** * consensus_1323#0 ATCAGTAC-CGCAGAATCAAAAAATTCTCTTTCGAC-TAGCAATTCGCACGAAACTGTAC 163 consensus_1323#1 CTTAATTTANNTATAACGTATAAAGGATCTTTGACCATGACTGTTGAAACAAAATTGAAT 177 * * * * ** * *** ***** * * * ** ** *** ** * consensus_1323#0 CTGAGCTAAATTATAATGCTTACATGGCAAAATATTTGGATAGTAATTGTTCACCTATAT 223 consensus_1323#1 TTAATGAAATTAACAAGAACTGGATCGGT-----TCCGGATGATACGCGTATAATTATTT 232 * * ** * * ** * ** * * **** ** ** * *** * consensus_1323#0 CGGAAGATAAAATTTTCATGTCTGGTGAAAGCACGCTTTGGATTAATTGTTTAATAGCTC 283 consensus_1323#1 CAACAAAAACAAAGGAATTGGCAACTAAATCACCGATTTTTGATAGTGAACTAGAAGATA 292 * * * * ** ** * * ** ** *** ** * ** ** * consensus_1323#0 GTATACTTTTCGATATACGCAAGTGTCCTGAAACTATACATCTTATACAGGATAAAATAC 343 consensus_1323#1 CTCCGGAAACGTCTACAGAAGATGATTATGATACT-TCCAAACCACAGTCG-TATAACAC 350 * ** * * * *** *** * ** * * * ** ** ** consensus_1323#0 AACGTAAATTATCCAATATAAAACTACCTTATTTTATGGAGTGCCTTTTAGTTTCAGAGA 403 consensus_1323#1 GGT-TAAAGAAACAACGTCTTCACAATCTTCCGGAAAGAAGTTCCTC--AATATGGTGGA 407 **** * * * ** * *** * * *** *** * * * ** consensus_1323#0 TAACAATAGGACAAGGAGCTCCTATTATTCATAATATAACAAAACCAATGATTAACGAAA 463 consensus_1323#1 TAG-AATAG--CAGCGAATAAATATT-TTCAACATGCAACCGAGTTATCCTATGTTCGAA 463 ** ***** ** ** **** **** ** *** * * * ** consensus_1323#0 GAGGTCTGTGGCTTAATTTAGATATAACGTATAAAGGATCTTTGACCATGACTGTTGAAA 523 consensus_1323#1 GAGCTATGGAAGGTGTTTCGAATATGGAGATTCGA------TTGATGGTTACTGTTTCA- 516 *** * ** * ** **** * * * **** * ****** * consensus_1323#0 CAAAATTGAATTTAATGAAATTAACAAGAACTGGATCGGTTCCGGATGATACGCGTATAA 583 consensus_1323#1 -AGTATTGAAGGTTGTGTA-TCGATAAACATTCCACCGGCACCGTCCGAT-CGTTTGTGG 573 * ****** * ** * * * ** * * * *** *** *** ** * * consensus_1323#0 TTATTTCAACAAAAACAAAGGAATTGGCAACTAAATCAC 622 consensus_1323#1 T-ATGGTTTTAAACCCG---------------------- 589 * ** *** * |
Data build on Fri Aug 8 13:08:45 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |